Strain Fitness in Pseudomonas sp. S08-1 around OH686_11500

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_11495 and OH686_11500 are separated by 272 nucleotidesOH686_11500 and OH686_11505 are separated by 104 nucleotides OH686_11495: OH686_11495 - Transcriptional regulator, AcrR family, at 2,371,153 to 2,371,794 _11495 OH686_11500: OH686_11500 - N-carbamoylputrescine amidase, at 2,372,067 to 2,372,948 _11500 OH686_11505: OH686_11505 - agmatine deiminase, at 2,373,053 to 2,374,159 _11505 Position (kb) 2372 2373Strain fitness (log2 ratio) -2 -1 0 1 2at 2371.068 kb on + strandat 2371.068 kb on + strandat 2371.068 kb on + strandat 2371.069 kb on - strandat 2371.069 kb on - strandat 2371.069 kb on - strandat 2371.069 kb on - strandat 2371.125 kb on + strandat 2371.125 kb on + strandat 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.270 kb on + strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.271 kb on - strand, within OH686_11495at 2371.312 kb on + strand, within OH686_11495at 2371.312 kb on + strand, within OH686_11495at 2371.312 kb on + strand, within OH686_11495at 2371.312 kb on + strand, within OH686_11495at 2371.312 kb on + strand, within OH686_11495at 2371.313 kb on - strand, within OH686_11495at 2371.313 kb on - strand, within OH686_11495at 2371.468 kb on + strand, within OH686_11495at 2371.468 kb on + strand, within OH686_11495at 2371.468 kb on + strand, within OH686_11495at 2371.468 kb on + strand, within OH686_11495at 2371.468 kb on + strand, within OH686_11495at 2371.469 kb on - strand, within OH686_11495at 2371.469 kb on - strand, within OH686_11495at 2371.663 kb on + strand, within OH686_11495at 2371.663 kb on + strand, within OH686_11495at 2371.663 kb on + strand, within OH686_11495at 2371.664 kb on - strand, within OH686_11495at 2371.664 kb on - strand, within OH686_11495at 2371.664 kb on - strand, within OH686_11495at 2371.664 kb on - strand, within OH686_11495at 2371.664 kb on - strand, within OH686_11495at 2371.738 kb on + strandat 2371.738 kb on + strandat 2371.739 kb on - strandat 2371.739 kb on - strandat 2371.739 kb on - strandat 2371.739 kb on - strandat 2371.750 kb on + strandat 2371.750 kb on + strandat 2371.750 kb on + strandat 2371.750 kb on + strandat 2371.751 kb on - strandat 2371.751 kb on - strandat 2371.751 kb on - strandat 2371.751 kb on - strandat 2371.751 kb on - strandat 2371.793 kb on - strandat 2371.793 kb on - strandat 2371.793 kb on - strandat 2371.813 kb on - strandat 2371.833 kb on - strandat 2371.833 kb on - strandat 2371.868 kb on + strandat 2371.868 kb on + strandat 2371.888 kb on + strandat 2371.888 kb on + strandat 2371.888 kb on + strandat 2371.888 kb on + strandat 2371.888 kb on + strandat 2371.888 kb on + strandat 2371.889 kb on - strandat 2371.889 kb on - strandat 2371.892 kb on + strandat 2371.893 kb on - strandat 2372.024 kb on + strandat 2372.024 kb on + strandat 2372.025 kb on - strandat 2372.025 kb on - strandat 2372.025 kb on - strandat 2372.025 kb on - strandat 2372.025 kb on - strandat 2372.214 kb on + strand, within OH686_11500at 2372.214 kb on + strand, within OH686_11500at 2372.214 kb on + strand, within OH686_11500at 2372.214 kb on + strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.215 kb on - strand, within OH686_11500at 2372.241 kb on + strand, within OH686_11500at 2372.241 kb on + strand, within OH686_11500at 2372.241 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.337 kb on + strand, within OH686_11500at 2372.338 kb on - strand, within OH686_11500at 2372.338 kb on - strand, within OH686_11500at 2372.338 kb on - strand, within OH686_11500at 2372.338 kb on - strand, within OH686_11500at 2372.338 kb on - strand, within OH686_11500at 2372.338 kb on - strand, within OH686_11500at 2372.409 kb on + strand, within OH686_11500at 2372.410 kb on - strand, within OH686_11500at 2372.410 kb on - strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.454 kb on + strand, within OH686_11500at 2372.455 kb on - strand, within OH686_11500at 2372.455 kb on - strand, within OH686_11500at 2372.455 kb on - strand, within OH686_11500at 2372.455 kb on - strand, within OH686_11500at 2372.455 kb on - strand, within OH686_11500at 2372.457 kb on + strand, within OH686_11500at 2372.457 kb on + strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.458 kb on - strand, within OH686_11500at 2372.502 kb on + strand, within OH686_11500at 2372.592 kb on + strand, within OH686_11500at 2372.659 kb on + strand, within OH686_11500at 2372.659 kb on + strand, within OH686_11500at 2372.660 kb on - strand, within OH686_11500at 2372.660 kb on - strand, within OH686_11500at 2372.751 kb on + strand, within OH686_11500at 2372.751 kb on + strand, within OH686_11500at 2372.751 kb on + strand, within OH686_11500at 2372.752 kb on - strand, within OH686_11500at 2372.752 kb on - strand, within OH686_11500at 2372.752 kb on - strand, within OH686_11500at 2372.752 kb on - strand, within OH686_11500at 2372.752 kb on - strand, within OH686_11500at 2372.752 kb on - strand, within OH686_11500at 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.904 kb on + strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2372.905 kb on - strandat 2373.028 kb on + strandat 2373.028 kb on + strandat 2373.028 kb on + strandat 2373.028 kb on + strandat 2373.028 kb on + strandat 2373.029 kb on - strandat 2373.029 kb on - strandat 2373.029 kb on - strandat 2373.029 kb on - strandat 2373.029 kb on - strandat 2373.039 kb on + strandat 2373.257 kb on + strand, within OH686_11505at 2373.258 kb on - strand, within OH686_11505at 2373.258 kb on - strand, within OH686_11505at 2373.429 kb on - strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.722 kb on + strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.723 kb on - strand, within OH686_11505at 2373.779 kb on + strand, within OH686_11505at 2373.779 kb on + strand, within OH686_11505at 2373.779 kb on + strand, within OH686_11505at 2373.780 kb on - strand, within OH686_11505at 2373.780 kb on - strand, within OH686_11505at 2373.780 kb on - strand, within OH686_11505at 2373.780 kb on - strand, within OH686_11505at 2373.780 kb on - strand, within OH686_11505

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,371,068 + -0.3
2,371,068 + +0.1
2,371,068 + +0.5
2,371,069 - +0.2
2,371,069 - +1.9
2,371,069 - -1.1
2,371,069 - -2.6
2,371,125 + +0.2
2,371,125 + +0.0
2,371,270 + OH686_11495 0.18 -0.7
2,371,270 + OH686_11495 0.18 -0.6
2,371,270 + OH686_11495 0.18 -0.5
2,371,270 + OH686_11495 0.18 -0.0
2,371,270 + OH686_11495 0.18 +0.9
2,371,270 + OH686_11495 0.18 -0.0
2,371,270 + OH686_11495 0.18 +0.2
2,371,270 + OH686_11495 0.18 -0.3
2,371,271 - OH686_11495 0.18 +0.9
2,371,271 - OH686_11495 0.18 +0.5
2,371,271 - OH686_11495 0.18 +0.6
2,371,271 - OH686_11495 0.18 -0.8
2,371,271 - OH686_11495 0.18 +0.9
2,371,271 - OH686_11495 0.18 -0.8
2,371,271 - OH686_11495 0.18 -2.2
2,371,271 - OH686_11495 0.18 -0.3
2,371,271 - OH686_11495 0.18 +0.5
2,371,312 + OH686_11495 0.25 -0.6
2,371,312 + OH686_11495 0.25 -0.6
2,371,312 + OH686_11495 0.25 -0.8
2,371,312 + OH686_11495 0.25 -0.5
2,371,312 + OH686_11495 0.25 -0.5
2,371,313 - OH686_11495 0.25 -0.6
2,371,313 - OH686_11495 0.25 +0.0
2,371,468 + OH686_11495 0.49 -0.8
2,371,468 + OH686_11495 0.49 -0.4
2,371,468 + OH686_11495 0.49 -0.0
2,371,468 + OH686_11495 0.49 +1.0
2,371,468 + OH686_11495 0.49 -0.3
2,371,469 - OH686_11495 0.49 +1.0
2,371,469 - OH686_11495 0.49 -0.7
2,371,663 + OH686_11495 0.79 -0.8
2,371,663 + OH686_11495 0.79 -0.7
2,371,663 + OH686_11495 0.79 -0.4
2,371,664 - OH686_11495 0.80 +1.9
2,371,664 - OH686_11495 0.80 -0.3
2,371,664 - OH686_11495 0.80 +1.5
2,371,664 - OH686_11495 0.80 +0.6
2,371,664 - OH686_11495 0.80 -0.2
2,371,738 + +0.1
2,371,738 + -0.6
2,371,739 - -0.9
2,371,739 - -0.5
2,371,739 - -0.4
2,371,739 - -0.3
2,371,750 + +0.3
2,371,750 + -1.5
2,371,750 + +0.2
2,371,750 + -0.5
2,371,751 - +0.4
2,371,751 - +0.6
2,371,751 - -0.4
2,371,751 - -0.1
2,371,751 - +1.1
2,371,793 - -0.8
2,371,793 - +0.6
2,371,793 - +0.4
2,371,813 - +0.1
2,371,833 - +0.1
2,371,833 - -0.5
2,371,868 + +1.1
2,371,868 + +0.3
2,371,888 + -0.7
2,371,888 + -0.1
2,371,888 + +0.0
2,371,888 + +1.1
2,371,888 + +1.5
2,371,888 + +0.1
2,371,889 - +0.4
2,371,889 - -0.4
2,371,892 + -0.3
2,371,893 - -0.2
2,372,024 + +0.2
2,372,024 + -0.4
2,372,025 - -0.1
2,372,025 - +1.3
2,372,025 - +0.7
2,372,025 - -1.0
2,372,025 - +0.4
2,372,214 + OH686_11500 0.17 -0.7
2,372,214 + OH686_11500 0.17 +0.6
2,372,214 + OH686_11500 0.17 +0.3
2,372,214 + OH686_11500 0.17 +0.4
2,372,215 - OH686_11500 0.17 -0.1
2,372,215 - OH686_11500 0.17 -0.7
2,372,215 - OH686_11500 0.17 +0.1
2,372,215 - OH686_11500 0.17 +1.4
2,372,215 - OH686_11500 0.17 -0.7
2,372,215 - OH686_11500 0.17 -0.7
2,372,215 - OH686_11500 0.17 +0.2
2,372,241 + OH686_11500 0.20 -0.4
2,372,241 + OH686_11500 0.20 +0.2
2,372,241 + OH686_11500 0.20 -0.3
2,372,337 + OH686_11500 0.31 +1.0
2,372,337 + OH686_11500 0.31 -0.4
2,372,337 + OH686_11500 0.31 -0.3
2,372,337 + OH686_11500 0.31 -0.4
2,372,337 + OH686_11500 0.31 +0.7
2,372,337 + OH686_11500 0.31 -0.1
2,372,337 + OH686_11500 0.31 +0.3
2,372,337 + OH686_11500 0.31 +0.1
2,372,338 - OH686_11500 0.31 -2.1
2,372,338 - OH686_11500 0.31 -1.1
2,372,338 - OH686_11500 0.31 -0.9
2,372,338 - OH686_11500 0.31 -0.5
2,372,338 - OH686_11500 0.31 +0.0
2,372,338 - OH686_11500 0.31 +0.3
2,372,409 + OH686_11500 0.39 -0.2
2,372,410 - OH686_11500 0.39 +2.0
2,372,410 - OH686_11500 0.39 +0.6
2,372,454 + OH686_11500 0.44 +0.1
2,372,454 + OH686_11500 0.44 -0.1
2,372,454 + OH686_11500 0.44 +0.3
2,372,454 + OH686_11500 0.44 -0.4
2,372,454 + OH686_11500 0.44 +0.9
2,372,454 + OH686_11500 0.44 +0.0
2,372,454 + OH686_11500 0.44 +0.2
2,372,454 + OH686_11500 0.44 -0.8
2,372,455 - OH686_11500 0.44 +0.5
2,372,455 - OH686_11500 0.44 +0.6
2,372,455 - OH686_11500 0.44 -0.3
2,372,455 - OH686_11500 0.44 +0.6
2,372,455 - OH686_11500 0.44 -0.6
2,372,457 + OH686_11500 0.44 -0.7
2,372,457 + OH686_11500 0.44 -0.3
2,372,458 - OH686_11500 0.44 -0.6
2,372,458 - OH686_11500 0.44 -0.2
2,372,458 - OH686_11500 0.44 -0.5
2,372,458 - OH686_11500 0.44 +0.4
2,372,458 - OH686_11500 0.44 +0.6
2,372,458 - OH686_11500 0.44 +0.1
2,372,458 - OH686_11500 0.44 +0.8
2,372,458 - OH686_11500 0.44 +0.2
2,372,458 - OH686_11500 0.44 -0.7
2,372,502 + OH686_11500 0.49 -0.1
2,372,592 + OH686_11500 0.60 +0.6
2,372,659 + OH686_11500 0.67 +0.2
2,372,659 + OH686_11500 0.67 -0.3
2,372,660 - OH686_11500 0.67 -0.3
2,372,660 - OH686_11500 0.67 -0.8
2,372,751 + OH686_11500 0.78 -1.0
2,372,751 + OH686_11500 0.78 +1.2
2,372,751 + OH686_11500 0.78 +0.3
2,372,752 - OH686_11500 0.78 -0.5
2,372,752 - OH686_11500 0.78 +0.0
2,372,752 - OH686_11500 0.78 -0.1
2,372,752 - OH686_11500 0.78 -1.2
2,372,752 - OH686_11500 0.78 -1.4
2,372,752 - OH686_11500 0.78 +0.2
2,372,904 + -0.4
2,372,904 + +0.1
2,372,904 + +0.2
2,372,904 + -0.2
2,372,904 + +0.3
2,372,904 + -0.3
2,372,904 + +0.1
2,372,904 + +0.6
2,372,904 + -0.4
2,372,904 + +0.2
2,372,905 - +0.5
2,372,905 - +0.5
2,372,905 - +0.4
2,372,905 - -1.1
2,372,905 - -0.1
2,372,905 - -1.5
2,372,905 - +1.4
2,372,905 - -1.6
2,372,905 - -0.6
2,372,905 - -0.5
2,372,905 - -1.2
2,373,028 + +0.7
2,373,028 + +0.2
2,373,028 + -0.0
2,373,028 + +0.2
2,373,028 + +0.4
2,373,029 - +0.3
2,373,029 - +0.4
2,373,029 - -0.1
2,373,029 - +0.0
2,373,029 - +0.4
2,373,039 + +0.2
2,373,257 + OH686_11505 0.18 -0.5
2,373,258 - OH686_11505 0.19 -0.2
2,373,258 - OH686_11505 0.19 -0.1
2,373,429 - OH686_11505 0.34 -1.8
2,373,722 + OH686_11505 0.60 +1.2
2,373,722 + OH686_11505 0.60 -0.5
2,373,722 + OH686_11505 0.60 -0.1
2,373,722 + OH686_11505 0.60 +0.4
2,373,722 + OH686_11505 0.60 +0.7
2,373,722 + OH686_11505 0.60 -0.5
2,373,722 + OH686_11505 0.60 +0.9
2,373,723 - OH686_11505 0.61 +0.3
2,373,723 - OH686_11505 0.61 +0.7
2,373,723 - OH686_11505 0.61 +2.7
2,373,723 - OH686_11505 0.61 +0.3
2,373,723 - OH686_11505 0.61 -0.6
2,373,723 - OH686_11505 0.61 +0.8
2,373,723 - OH686_11505 0.61 -1.9
2,373,723 - OH686_11505 0.61 -0.0
2,373,723 - OH686_11505 0.61 +0.9
2,373,779 + OH686_11505 0.66 +0.0
2,373,779 + OH686_11505 0.66 +0.4
2,373,779 + OH686_11505 0.66 +0.9
2,373,780 - OH686_11505 0.66 -0.3
2,373,780 - OH686_11505 0.66 -0.1
2,373,780 - OH686_11505 0.66 -2.7
2,373,780 - OH686_11505 0.66 +1.1
2,373,780 - OH686_11505 0.66 -0.1

Or see this region's nucleotide sequence