Strain Fitness in Pseudomonas sp. S08-1 around OH686_10165

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_10155 and OH686_10160 are separated by 107 nucleotidesOH686_10160 and OH686_10165 overlap by 8 nucleotidesOH686_10165 and OH686_10170 are separated by 21 nucleotidesOH686_10170 and OH686_10175 are separated by 3 nucleotidesOH686_10175 and OH686_10180 overlap by 4 nucleotides OH686_10155: OH686_10155 - 2-polyprenylphenol 6-hydroxylase, at 2,085,300 to 2,086,895 _10155 OH686_10160: OH686_10160 - Phosphoribosyl-AMP cyclohydrolase , at 2,087,003 to 2,087,401 _10160 OH686_10165: OH686_10165 - Phosphoribosyl-ATP pyrophosphatase , at 2,087,394 to 2,087,732 _10165 OH686_10170: OH686_10170 - Twin-arginine translocation protein TatA, at 2,087,754 to 2,088,002 _10170 OH686_10175: OH686_10175 - twin arginine-targeting protein translocase TatB, at 2,088,006 to 2,088,380 _10175 OH686_10180: OH686_10180 - twin arginine-targeting protein translocase TatC, at 2,088,377 to 2,089,150 _10180 Position (kb) 2087 2088Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2087.150 kb on + strand, within OH686_10160at 2087.150 kb on + strand, within OH686_10160at 2087.150 kb on + strand, within OH686_10160at 2087.150 kb on + strand, within OH686_10160at 2087.150 kb on + strand, within OH686_10160at 2087.150 kb on + strand, within OH686_10160at 2087.150 kb on + strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.151 kb on - strand, within OH686_10160at 2087.313 kb on - strand, within OH686_10160at 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.378 kb on + strandat 2087.379 kb on - strandat 2087.379 kb on - strandat 2087.379 kb on - strandat 2087.379 kb on - strandat 2087.379 kb on - strandat 2087.379 kb on - strandat 2087.379 kb on - strandat 2087.463 kb on + strand, within OH686_10165at 2087.463 kb on + strand, within OH686_10165at 2087.463 kb on + strand, within OH686_10165at 2087.463 kb on + strand, within OH686_10165at 2087.463 kb on + strand, within OH686_10165at 2087.463 kb on + strand, within OH686_10165at 2087.463 kb on + strand, within OH686_10165at 2087.464 kb on - strand, within OH686_10165at 2087.464 kb on - strand, within OH686_10165at 2087.464 kb on - strand, within OH686_10165at 2087.464 kb on - strand, within OH686_10165at 2087.464 kb on - strand, within OH686_10165at 2087.464 kb on - strand, within OH686_10165at 2087.478 kb on + strand, within OH686_10165at 2087.587 kb on - strand, within OH686_10165at 2088.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,087,150 + OH686_10160 0.37 -1.4
2,087,150 + OH686_10160 0.37 -2.6
2,087,150 + OH686_10160 0.37 -2.3
2,087,150 + OH686_10160 0.37 -2.4
2,087,150 + OH686_10160 0.37 -3.3
2,087,150 + OH686_10160 0.37 -1.8
2,087,150 + OH686_10160 0.37 -2.1
2,087,151 - OH686_10160 0.37 -3.5
2,087,151 - OH686_10160 0.37 -3.0
2,087,151 - OH686_10160 0.37 -5.1
2,087,151 - OH686_10160 0.37 -3.4
2,087,151 - OH686_10160 0.37 -3.4
2,087,151 - OH686_10160 0.37 -2.4
2,087,151 - OH686_10160 0.37 -2.4
2,087,151 - OH686_10160 0.37 -4.0
2,087,151 - OH686_10160 0.37 -3.3
2,087,313 - OH686_10160 0.78 -2.0
2,087,378 + -0.4
2,087,378 + -0.2
2,087,378 + +0.7
2,087,378 + -0.6
2,087,378 + -0.6
2,087,378 + +1.4
2,087,378 + +0.4
2,087,378 + -0.2
2,087,379 - +0.2
2,087,379 - -0.8
2,087,379 - +0.6
2,087,379 - -0.7
2,087,379 - -1.0
2,087,379 - -0.5
2,087,379 - -0.5
2,087,463 + OH686_10165 0.20 -0.6
2,087,463 + OH686_10165 0.20 -2.0
2,087,463 + OH686_10165 0.20 -1.7
2,087,463 + OH686_10165 0.20 -1.6
2,087,463 + OH686_10165 0.20 -2.2
2,087,463 + OH686_10165 0.20 -0.1
2,087,463 + OH686_10165 0.20 -1.9
2,087,464 - OH686_10165 0.21 -1.3
2,087,464 - OH686_10165 0.21 -3.3
2,087,464 - OH686_10165 0.21 -2.2
2,087,464 - OH686_10165 0.21 -3.8
2,087,464 - OH686_10165 0.21 -1.9
2,087,464 - OH686_10165 0.21 -1.8
2,087,478 + OH686_10165 0.25 -2.9
2,087,587 - OH686_10165 0.57 -0.7
2,088,408 + -0.1

Or see this region's nucleotide sequence