Strain Fitness in Pseudomonas sp. S08-1 around OH686_08560

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08545 and OH686_08550 are separated by 40 nucleotidesOH686_08550 and OH686_08555 are separated by 13 nucleotidesOH686_08555 and OH686_08560 are separated by 14 nucleotidesOH686_08560 and OH686_08565 are separated by 8 nucleotidesOH686_08565 and OH686_08570 are separated by 54 nucleotides OH686_08540: OH686_08540 - RNA polymerase sigma-54 factor, at 1,735,411 to 1,736,913 _08540 OH686_08545: OH686_08545 - hypothetical protein' product='hypothetical protein, at 1,736,812 to 1,737,030 _08545 OH686_08550: OH686_08550 - Ribosome hibernation promoting factor Hpf, at 1,737,071 to 1,737,379 _08550 OH686_08555: OH686_08555 - PTS IIA-like nitrogen-regulatory protein PtsN, at 1,737,393 to 1,737,857 _08555 OH686_08560: OH686_08560 - RNase adapter protein RapZ, at 1,737,872 to 1,738,729 _08560 OH686_08565: OH686_08565 - Phosphocarrier protein, nitrogen regulation associated, at 1,738,738 to 1,739,010 _08565 OH686_08570: OH686_08570 - TldE protein, part of TldE/TldD proteolytic complex, at 1,739,065 to 1,740,411 _08570 Position (kb) 1737 1738 1739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1736.879 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.946 kb on + strand, within OH686_08545at 1736.960 kb on + strand, within OH686_08545at 1736.960 kb on + strand, within OH686_08545at 1736.961 kb on - strand, within OH686_08545at 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.034 kb on - strandat 1737.034 kb on - strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.282 kb on - strand, within OH686_08550at 1737.282 kb on - strand, within OH686_08550at 1737.282 kb on - strand, within OH686_08550at 1737.931 kb on - strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1738.104 kb on + strand, within OH686_08560at 1738.104 kb on + strand, within OH686_08560at 1738.104 kb on + strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.105 kb on - strand, within OH686_08560at 1738.117 kb on + strand, within OH686_08560at 1738.117 kb on + strand, within OH686_08560at 1738.117 kb on + strand, within OH686_08560at 1738.118 kb on - strand, within OH686_08560at 1738.136 kb on + strand, within OH686_08560at 1738.137 kb on - strand, within OH686_08560at 1738.137 kb on - strand, within OH686_08560at 1738.137 kb on - strand, within OH686_08560at 1738.137 kb on - strand, within OH686_08560at 1738.310 kb on + strand, within OH686_08560at 1738.310 kb on + strand, within OH686_08560at 1738.311 kb on - strand, within OH686_08560at 1738.311 kb on - strand, within OH686_08560at 1738.311 kb on - strand, within OH686_08560at 1738.425 kb on + strand, within OH686_08560at 1738.425 kb on + strand, within OH686_08560at 1738.426 kb on - strand, within OH686_08560at 1738.508 kb on + strand, within OH686_08560at 1738.509 kb on - strand, within OH686_08560at 1738.509 kb on - strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.541 kb on + strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.542 kb on - strand, within OH686_08560at 1738.560 kb on - strand, within OH686_08560at 1738.560 kb on - strand, within OH686_08560at 1738.604 kb on + strand, within OH686_08560at 1738.604 kb on + strand, within OH686_08560at 1738.604 kb on + strand, within OH686_08560at 1738.605 kb on - strand, within OH686_08560at 1738.605 kb on - strand, within OH686_08560at 1738.605 kb on - strand, within OH686_08560at 1738.605 kb on - strand, within OH686_08560at 1738.605 kb on - strand, within OH686_08560at 1738.605 kb on - strand, within OH686_08560at 1738.652 kb on + strandat 1738.652 kb on + strandat 1738.652 kb on + strandat 1738.652 kb on + strandat 1738.652 kb on + strandat 1738.653 kb on - strandat 1738.653 kb on - strandat 1738.653 kb on - strandat 1738.653 kb on - strandat 1738.779 kb on - strand, within OH686_08565at 1739.152 kb on + strandat 1739.152 kb on + strandat 1739.153 kb on - strandat 1739.153 kb on - strandat 1739.153 kb on - strandat 1739.255 kb on + strand, within OH686_08570at 1739.423 kb on + strand, within OH686_08570at 1739.423 kb on + strand, within OH686_08570at 1739.424 kb on - strand, within OH686_08570at 1739.424 kb on - strand, within OH686_08570at 1739.424 kb on - strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.438 kb on + strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.439 kb on - strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.477 kb on + strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.478 kb on - strand, within OH686_08570at 1739.609 kb on + strand, within OH686_08570

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,736,879 + -0.1
1,736,911 + -0.1
1,736,911 + -0.9
1,736,911 + -0.5
1,736,911 + +0.3
1,736,911 + -0.7
1,736,912 - +1.6
1,736,912 - -0.1
1,736,912 - -1.1
1,736,912 - -0.1
1,736,912 - -1.1
1,736,912 - -0.9
1,736,912 - -0.9
1,736,946 + OH686_08545 0.61 +1.0
1,736,960 + OH686_08545 0.68 -1.2
1,736,960 + OH686_08545 0.68 -0.4
1,736,961 - OH686_08545 0.68 +0.5
1,737,033 + -0.1
1,737,033 + +1.4
1,737,033 + -0.1
1,737,033 + +0.5
1,737,033 + +0.0
1,737,033 + +0.8
1,737,033 + -0.2
1,737,033 + -0.2
1,737,033 + +1.0
1,737,034 - +0.1
1,737,034 - -1.2
1,737,045 + +0.3
1,737,045 + -0.8
1,737,045 + -0.7
1,737,045 + +1.3
1,737,045 + +1.0
1,737,046 - -1.1
1,737,046 - -0.9
1,737,046 - -0.3
1,737,046 - -0.4
1,737,046 - -1.4
1,737,125 + OH686_08550 0.17 -0.2
1,737,125 + OH686_08550 0.17 +1.5
1,737,125 + OH686_08550 0.17 +0.3
1,737,125 + OH686_08550 0.17 +0.3
1,737,125 + OH686_08550 0.17 +0.4
1,737,125 + OH686_08550 0.17 -0.2
1,737,281 + OH686_08550 0.68 -0.5
1,737,281 + OH686_08550 0.68 -0.1
1,737,281 + OH686_08550 0.68 -0.3
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.1
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.3
1,737,281 + OH686_08550 0.68 +0.1
1,737,281 + OH686_08550 0.68 -0.2
1,737,281 + OH686_08550 0.68 +0.6
1,737,281 + OH686_08550 0.68 -0.1
1,737,281 + OH686_08550 0.68 +0.4
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 -0.2
1,737,281 + OH686_08550 0.68 +0.5
1,737,281 + OH686_08550 0.68 -0.1
1,737,281 + OH686_08550 0.68 -0.2
1,737,281 + OH686_08550 0.68 +0.8
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 -0.3
1,737,281 + OH686_08550 0.68 -1.3
1,737,281 + OH686_08550 0.68 -0.8
1,737,281 + OH686_08550 0.68 +0.3
1,737,281 + OH686_08550 0.68 -0.5
1,737,281 + OH686_08550 0.68 -0.1
1,737,281 + OH686_08550 0.68 -1.8
1,737,281 + OH686_08550 0.68 -0.3
1,737,281 + OH686_08550 0.68 +0.3
1,737,281 + OH686_08550 0.68 +0.4
1,737,282 - OH686_08550 0.68 -0.4
1,737,282 - OH686_08550 0.68 -0.4
1,737,282 - OH686_08550 0.68 -0.4
1,737,931 - -0.4
1,737,950 + -0.6
1,737,950 + -0.5
1,737,950 + -1.4
1,737,950 + +0.4
1,737,950 + -0.9
1,737,950 + -1.5
1,737,950 + -2.3
1,737,950 + +0.0
1,737,950 + -0.4
1,737,951 - +0.5
1,737,951 - -0.4
1,737,951 - -0.4
1,737,951 - -0.9
1,737,951 - -1.1
1,737,951 - -2.1
1,738,104 + OH686_08560 0.27 -0.9
1,738,104 + OH686_08560 0.27 +1.2
1,738,104 + OH686_08560 0.27 -0.6
1,738,105 - OH686_08560 0.27 -1.2
1,738,105 - OH686_08560 0.27 -0.7
1,738,105 - OH686_08560 0.27 -2.3
1,738,105 - OH686_08560 0.27 -0.4
1,738,105 - OH686_08560 0.27 -0.9
1,738,105 - OH686_08560 0.27 -1.0
1,738,105 - OH686_08560 0.27 +0.8
1,738,105 - OH686_08560 0.27 +0.6
1,738,117 + OH686_08560 0.29 +0.1
1,738,117 + OH686_08560 0.29 -0.1
1,738,117 + OH686_08560 0.29 -0.8
1,738,118 - OH686_08560 0.29 -2.4
1,738,136 + OH686_08560 0.31 +0.1
1,738,137 - OH686_08560 0.31 -1.4
1,738,137 - OH686_08560 0.31 -2.1
1,738,137 - OH686_08560 0.31 -1.8
1,738,137 - OH686_08560 0.31 -1.7
1,738,310 + OH686_08560 0.51 -1.6
1,738,310 + OH686_08560 0.51 -2.3
1,738,311 - OH686_08560 0.51 -1.2
1,738,311 - OH686_08560 0.51 -0.8
1,738,311 - OH686_08560 0.51 -1.0
1,738,425 + OH686_08560 0.64 -1.6
1,738,425 + OH686_08560 0.64 +0.2
1,738,426 - OH686_08560 0.65 +0.1
1,738,508 + OH686_08560 0.74 -2.0
1,738,509 - OH686_08560 0.74 -1.1
1,738,509 - OH686_08560 0.74 -0.1
1,738,541 + OH686_08560 0.78 -1.1
1,738,541 + OH686_08560 0.78 -3.0
1,738,541 + OH686_08560 0.78 -1.2
1,738,541 + OH686_08560 0.78 -2.3
1,738,541 + OH686_08560 0.78 +0.4
1,738,541 + OH686_08560 0.78 -2.0
1,738,541 + OH686_08560 0.78 -1.2
1,738,542 - OH686_08560 0.78 -2.3
1,738,542 - OH686_08560 0.78 -1.5
1,738,542 - OH686_08560 0.78 -0.8
1,738,542 - OH686_08560 0.78 -1.6
1,738,542 - OH686_08560 0.78 -1.2
1,738,542 - OH686_08560 0.78 -1.4
1,738,542 - OH686_08560 0.78 -0.3
1,738,542 - OH686_08560 0.78 -1.2
1,738,542 - OH686_08560 0.78 +0.2
1,738,560 - OH686_08560 0.80 -1.2
1,738,560 - OH686_08560 0.80 +0.0
1,738,604 + OH686_08560 0.85 -2.7
1,738,604 + OH686_08560 0.85 -2.5
1,738,604 + OH686_08560 0.85 -1.7
1,738,605 - OH686_08560 0.85 -0.9
1,738,605 - OH686_08560 0.85 -1.7
1,738,605 - OH686_08560 0.85 -0.9
1,738,605 - OH686_08560 0.85 -1.1
1,738,605 - OH686_08560 0.85 -0.1
1,738,605 - OH686_08560 0.85 -0.2
1,738,652 + +0.1
1,738,652 + -2.5
1,738,652 + -2.7
1,738,652 + +0.6
1,738,652 + -1.9
1,738,653 - +0.9
1,738,653 - -1.1
1,738,653 - -1.2
1,738,653 - +1.5
1,738,779 - OH686_08565 0.15 +0.1
1,739,152 + -0.4
1,739,152 + -0.7
1,739,153 - +0.2
1,739,153 - -0.9
1,739,153 - -0.7
1,739,255 + OH686_08570 0.14 -0.2
1,739,423 + OH686_08570 0.27 -0.4
1,739,423 + OH686_08570 0.27 +1.7
1,739,424 - OH686_08570 0.27 -0.0
1,739,424 - OH686_08570 0.27 -0.1
1,739,424 - OH686_08570 0.27 -0.2
1,739,438 + OH686_08570 0.28 +0.0
1,739,438 + OH686_08570 0.28 -0.0
1,739,438 + OH686_08570 0.28 +0.1
1,739,438 + OH686_08570 0.28 +1.1
1,739,438 + OH686_08570 0.28 -0.2
1,739,438 + OH686_08570 0.28 -0.1
1,739,438 + OH686_08570 0.28 -0.5
1,739,438 + OH686_08570 0.28 +0.1
1,739,438 + OH686_08570 0.28 +0.2
1,739,438 + OH686_08570 0.28 +0.3
1,739,438 + OH686_08570 0.28 -0.5
1,739,439 - OH686_08570 0.28 -0.1
1,739,439 - OH686_08570 0.28 +0.1
1,739,439 - OH686_08570 0.28 +0.1
1,739,439 - OH686_08570 0.28 +1.4
1,739,439 - OH686_08570 0.28 +0.2
1,739,439 - OH686_08570 0.28 +0.6
1,739,439 - OH686_08570 0.28 +1.0
1,739,439 - OH686_08570 0.28 -0.7
1,739,477 + OH686_08570 0.31 +0.3
1,739,477 + OH686_08570 0.31 -0.2
1,739,477 + OH686_08570 0.31 +0.3
1,739,477 + OH686_08570 0.31 +0.1
1,739,477 + OH686_08570 0.31 +0.5
1,739,477 + OH686_08570 0.31 +1.8
1,739,477 + OH686_08570 0.31 -1.9
1,739,477 + OH686_08570 0.31 +0.3
1,739,477 + OH686_08570 0.31 -0.2
1,739,477 + OH686_08570 0.31 +0.6
1,739,478 - OH686_08570 0.31 +0.3
1,739,478 - OH686_08570 0.31 -0.6
1,739,478 - OH686_08570 0.31 +0.5
1,739,478 - OH686_08570 0.31 -0.1
1,739,478 - OH686_08570 0.31 +0.3
1,739,478 - OH686_08570 0.31 +0.5
1,739,478 - OH686_08570 0.31 +0.2
1,739,478 - OH686_08570 0.31 -0.2
1,739,478 - OH686_08570 0.31 +0.6
1,739,478 - OH686_08570 0.31 -0.5
1,739,609 + OH686_08570 0.40 -0.5

Or see this region's nucleotide sequence