Strain Fitness in Pseudomonas sp. S08-1 around OH686_07905

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07895 and OH686_07900 overlap by 4 nucleotidesOH686_07900 and OH686_07905 overlap by 13 nucleotidesOH686_07905 and OH686_07910 are separated by 128 nucleotides OH686_07895: OH686_07895 - glutamate racemase, at 1,613,704 to 1,614,495 _07895 OH686_07900: OH686_07900 - Molybdopterin-synthase adenylyltransferase , at 1,614,492 to 1,615,262 _07900 OH686_07905: OH686_07905 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 1,615,250 to 1,616,080 _07905 OH686_07910: OH686_07910 - peptide chain release factor 1, at 1,616,209 to 1,617,291 _07910 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -3 -2 -1 0 1at 1614.495 kb on + strandat 1614.495 kb on + strandat 1614.495 kb on + strandat 1614.495 kb on + strandat 1614.495 kb on + strandat 1614.495 kb on + strandat 1614.496 kb on - strandat 1614.496 kb on - strandat 1614.496 kb on - strandat 1614.496 kb on - strandat 1614.496 kb on - strandat 1614.496 kb on - strandat 1614.496 kb on - strandat 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.651 kb on + strand, within OH686_07900at 1614.652 kb on - strand, within OH686_07900at 1614.652 kb on - strand, within OH686_07900at 1614.652 kb on - strand, within OH686_07900at 1614.652 kb on - strand, within OH686_07900at 1614.652 kb on - strand, within OH686_07900at 1614.718 kb on + strand, within OH686_07900at 1614.719 kb on - strand, within OH686_07900at 1614.731 kb on - strand, within OH686_07900at 1614.731 kb on - strand, within OH686_07900at 1614.731 kb on - strand, within OH686_07900at 1614.731 kb on - strand, within OH686_07900at 1614.731 kb on - strand, within OH686_07900at 1615.106 kb on - strand, within OH686_07900at 1615.106 kb on - strand, within OH686_07900at 1615.106 kb on - strand, within OH686_07900at 1615.106 kb on - strand, within OH686_07900at 1615.106 kb on - strand, within OH686_07900at 1615.106 kb on - strand, within OH686_07900at 1615.217 kb on - strandat 1615.276 kb on + strandat 1615.277 kb on - strandat 1615.277 kb on - strandat 1615.424 kb on + strand, within OH686_07905at 1615.425 kb on - strand, within OH686_07905at 1615.425 kb on - strand, within OH686_07905at 1615.436 kb on - strand, within OH686_07905at 1615.527 kb on + strand, within OH686_07905at 1615.527 kb on + strand, within OH686_07905at 1615.527 kb on + strand, within OH686_07905at 1615.527 kb on + strand, within OH686_07905at 1615.527 kb on + strand, within OH686_07905at 1615.528 kb on - strand, within OH686_07905at 1615.528 kb on - strand, within OH686_07905at 1615.528 kb on - strand, within OH686_07905at 1615.875 kb on + strand, within OH686_07905at 1615.875 kb on + strand, within OH686_07905at 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.092 kb on + strandat 1616.093 kb on - strandat 1616.093 kb on - strandat 1616.093 kb on - strandat 1616.093 kb on - strandat 1616.093 kb on - strandat 1616.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,614,495 + -1.0
1,614,495 + -1.7
1,614,495 + -1.5
1,614,495 + +0.4
1,614,495 + -0.5
1,614,495 + -2.1
1,614,496 - -0.4
1,614,496 - +0.3
1,614,496 - +0.1
1,614,496 - +1.1
1,614,496 - +0.5
1,614,496 - -0.1
1,614,496 - +0.2
1,614,651 + OH686_07900 0.21 -2.2
1,614,651 + OH686_07900 0.21 -1.8
1,614,651 + OH686_07900 0.21 -2.9
1,614,651 + OH686_07900 0.21 -1.2
1,614,651 + OH686_07900 0.21 -2.1
1,614,651 + OH686_07900 0.21 -2.8
1,614,651 + OH686_07900 0.21 -0.6
1,614,651 + OH686_07900 0.21 -0.9
1,614,651 + OH686_07900 0.21 -2.0
1,614,651 + OH686_07900 0.21 -3.0
1,614,651 + OH686_07900 0.21 -1.4
1,614,651 + OH686_07900 0.21 -1.1
1,614,651 + OH686_07900 0.21 -2.2
1,614,651 + OH686_07900 0.21 -1.8
1,614,651 + OH686_07900 0.21 -1.0
1,614,651 + OH686_07900 0.21 -2.9
1,614,652 - OH686_07900 0.21 -0.1
1,614,652 - OH686_07900 0.21 -1.9
1,614,652 - OH686_07900 0.21 -3.1
1,614,652 - OH686_07900 0.21 -3.5
1,614,652 - OH686_07900 0.21 -2.2
1,614,718 + OH686_07900 0.29 -1.2
1,614,719 - OH686_07900 0.29 -1.8
1,614,731 - OH686_07900 0.31 -0.1
1,614,731 - OH686_07900 0.31 -1.1
1,614,731 - OH686_07900 0.31 -3.6
1,614,731 - OH686_07900 0.31 -1.8
1,614,731 - OH686_07900 0.31 -1.7
1,615,106 - OH686_07900 0.80 -1.5
1,615,106 - OH686_07900 0.80 -2.9
1,615,106 - OH686_07900 0.80 -1.3
1,615,106 - OH686_07900 0.80 -0.2
1,615,106 - OH686_07900 0.80 -2.3
1,615,106 - OH686_07900 0.80 -2.5
1,615,217 - -1.1
1,615,276 + -0.6
1,615,277 - -0.1
1,615,277 - -0.6
1,615,424 + OH686_07905 0.21 -0.6
1,615,425 - OH686_07905 0.21 -0.4
1,615,425 - OH686_07905 0.21 -0.1
1,615,436 - OH686_07905 0.22 +0.4
1,615,527 + OH686_07905 0.33 -0.6
1,615,527 + OH686_07905 0.33 -0.1
1,615,527 + OH686_07905 0.33 -0.1
1,615,527 + OH686_07905 0.33 -0.1
1,615,527 + OH686_07905 0.33 -0.1
1,615,528 - OH686_07905 0.33 -0.9
1,615,528 - OH686_07905 0.33 -1.2
1,615,528 - OH686_07905 0.33 -1.1
1,615,875 + OH686_07905 0.75 -0.4
1,615,875 + OH686_07905 0.75 -0.1
1,616,092 + +0.0
1,616,092 + -0.2
1,616,092 + -0.4
1,616,092 + -0.3
1,616,092 + +0.0
1,616,092 + -1.1
1,616,092 + +0.1
1,616,092 + -0.4
1,616,093 - -0.2
1,616,093 - -0.0
1,616,093 - +0.2
1,616,093 - -0.7
1,616,093 - +0.3
1,616,157 - +0.0

Or see this region's nucleotide sequence