Strain Fitness in Pseudomonas sp. S08-1 around OH686_06895

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06890 and OH686_06895 are separated by 197 nucleotidesOH686_06895 and OH686_06900 are separated by 136 nucleotides OH686_06890: OH686_06890 - putative membrane protein, at 1,405,763 to 1,406,497 _06890 OH686_06895: OH686_06895 - Transcriptional regulator, LysR family, at 1,406,695 to 1,407,606 _06895 OH686_06900: OH686_06900 - 4-aminobutyraldehyde dehydrogenase , at 1,407,743 to 1,409,197 _06900 Position (kb) 1406 1407 1408Strain fitness (log2 ratio) -2 -1 0 1 2at 1405.698 kb on + strandat 1405.698 kb on + strandat 1405.698 kb on + strandat 1405.698 kb on + strandat 1405.699 kb on - strandat 1405.699 kb on - strandat 1405.699 kb on - strandat 1405.699 kb on - strandat 1405.764 kb on + strandat 1405.764 kb on + strandat 1405.765 kb on - strandat 1405.845 kb on + strand, within OH686_06890at 1405.845 kb on + strand, within OH686_06890at 1405.845 kb on + strand, within OH686_06890at 1405.845 kb on + strand, within OH686_06890at 1405.846 kb on - strand, within OH686_06890at 1405.846 kb on - strand, within OH686_06890at 1405.846 kb on - strand, within OH686_06890at 1405.846 kb on - strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.896 kb on + strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1405.897 kb on - strand, within OH686_06890at 1406.199 kb on + strand, within OH686_06890at 1406.200 kb on - strand, within OH686_06890at 1406.208 kb on + strand, within OH686_06890at 1406.208 kb on + strand, within OH686_06890at 1406.208 kb on + strand, within OH686_06890at 1406.208 kb on + strand, within OH686_06890at 1406.208 kb on + strand, within OH686_06890at 1406.208 kb on + strand, within OH686_06890at 1406.209 kb on - strand, within OH686_06890at 1406.209 kb on - strand, within OH686_06890at 1406.209 kb on - strand, within OH686_06890at 1406.209 kb on - strand, within OH686_06890at 1406.241 kb on + strand, within OH686_06890at 1406.241 kb on + strand, within OH686_06890at 1406.241 kb on + strand, within OH686_06890at 1406.241 kb on + strand, within OH686_06890at 1406.241 kb on + strand, within OH686_06890at 1406.242 kb on - strand, within OH686_06890at 1406.242 kb on - strand, within OH686_06890at 1406.365 kb on + strand, within OH686_06890at 1406.545 kb on + strandat 1406.545 kb on + strandat 1406.545 kb on + strandat 1406.546 kb on - strandat 1406.625 kb on + strandat 1406.661 kb on - strandat 1406.771 kb on + strandat 1407.007 kb on + strand, within OH686_06895at 1407.008 kb on - strand, within OH686_06895at 1407.008 kb on - strand, within OH686_06895at 1407.008 kb on - strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.010 kb on + strand, within OH686_06895at 1407.011 kb on - strand, within OH686_06895at 1407.011 kb on - strand, within OH686_06895at 1407.011 kb on - strand, within OH686_06895at 1407.011 kb on - strand, within OH686_06895at 1407.088 kb on + strand, within OH686_06895at 1407.088 kb on + strand, within OH686_06895at 1407.088 kb on + strand, within OH686_06895at 1407.088 kb on + strand, within OH686_06895at 1407.088 kb on + strand, within OH686_06895at 1407.088 kb on + strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.089 kb on - strand, within OH686_06895at 1407.433 kb on + strand, within OH686_06895at 1407.433 kb on + strand, within OH686_06895at 1407.434 kb on - strand, within OH686_06895at 1407.482 kb on + strand, within OH686_06895at 1407.482 kb on + strand, within OH686_06895at 1407.482 kb on + strand, within OH686_06895at 1407.482 kb on + strand, within OH686_06895at 1407.483 kb on - strand, within OH686_06895at 1407.483 kb on - strand, within OH686_06895at 1407.624 kb on + strandat 1407.638 kb on - strandat 1407.638 kb on - strandat 1407.657 kb on + strandat 1407.671 kb on + strandat 1407.671 kb on + strandat 1408.133 kb on + strand, within OH686_06900at 1408.133 kb on + strand, within OH686_06900at 1408.133 kb on + strand, within OH686_06900at 1408.133 kb on + strand, within OH686_06900at 1408.133 kb on + strand, within OH686_06900at 1408.133 kb on + strand, within OH686_06900at 1408.134 kb on - strand, within OH686_06900at 1408.134 kb on - strand, within OH686_06900at 1408.134 kb on - strand, within OH686_06900at 1408.147 kb on + strand, within OH686_06900at 1408.148 kb on - strand, within OH686_06900at 1408.148 kb on - strand, within OH686_06900at 1408.205 kb on + strand, within OH686_06900at 1408.575 kb on - strand, within OH686_06900at 1408.578 kb on - strand, within OH686_06900at 1408.578 kb on - strand, within OH686_06900at 1408.578 kb on - strand, within OH686_06900at 1408.578 kb on - strand, within OH686_06900at 1408.578 kb on - strand, within OH686_06900at 1408.578 kb on - strand, within OH686_06900

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,405,698 + +0.1
1,405,698 + -0.3
1,405,698 + +1.2
1,405,698 + -0.1
1,405,699 - -1.0
1,405,699 - +0.9
1,405,699 - -0.6
1,405,699 - -0.8
1,405,764 + -1.2
1,405,764 + +0.1
1,405,765 - -0.8
1,405,845 + OH686_06890 0.11 -1.0
1,405,845 + OH686_06890 0.11 -0.9
1,405,845 + OH686_06890 0.11 -0.5
1,405,845 + OH686_06890 0.11 -0.8
1,405,846 - OH686_06890 0.11 +1.9
1,405,846 - OH686_06890 0.11 -0.3
1,405,846 - OH686_06890 0.11 +0.9
1,405,846 - OH686_06890 0.11 -0.3
1,405,896 + OH686_06890 0.18 -0.0
1,405,896 + OH686_06890 0.18 -0.8
1,405,896 + OH686_06890 0.18 -0.2
1,405,896 + OH686_06890 0.18 -1.8
1,405,896 + OH686_06890 0.18 +0.0
1,405,896 + OH686_06890 0.18 +0.6
1,405,896 + OH686_06890 0.18 +0.7
1,405,896 + OH686_06890 0.18 +0.3
1,405,896 + OH686_06890 0.18 +0.5
1,405,896 + OH686_06890 0.18 -1.9
1,405,896 + OH686_06890 0.18 -0.7
1,405,897 - OH686_06890 0.18 -0.1
1,405,897 - OH686_06890 0.18 +0.6
1,405,897 - OH686_06890 0.18 -0.5
1,405,897 - OH686_06890 0.18 -1.1
1,405,897 - OH686_06890 0.18 -0.1
1,405,897 - OH686_06890 0.18 +1.1
1,405,897 - OH686_06890 0.18 -0.1
1,405,897 - OH686_06890 0.18 +0.9
1,405,897 - OH686_06890 0.18 -1.0
1,406,199 + OH686_06890 0.59 -0.2
1,406,200 - OH686_06890 0.59 +0.4
1,406,208 + OH686_06890 0.61 +0.6
1,406,208 + OH686_06890 0.61 +0.6
1,406,208 + OH686_06890 0.61 -0.2
1,406,208 + OH686_06890 0.61 +0.4
1,406,208 + OH686_06890 0.61 -2.1
1,406,208 + OH686_06890 0.61 -0.2
1,406,209 - OH686_06890 0.61 +1.2
1,406,209 - OH686_06890 0.61 -0.0
1,406,209 - OH686_06890 0.61 +0.6
1,406,209 - OH686_06890 0.61 -0.6
1,406,241 + OH686_06890 0.65 -0.0
1,406,241 + OH686_06890 0.65 +0.9
1,406,241 + OH686_06890 0.65 -0.4
1,406,241 + OH686_06890 0.65 +0.1
1,406,241 + OH686_06890 0.65 -0.4
1,406,242 - OH686_06890 0.65 +0.4
1,406,242 - OH686_06890 0.65 +0.7
1,406,365 + OH686_06890 0.82 +0.4
1,406,545 + -0.4
1,406,545 + +0.1
1,406,545 + +0.1
1,406,546 - +1.2
1,406,625 + +0.1
1,406,661 - +0.7
1,406,771 + -0.1
1,407,007 + OH686_06895 0.34 +1.2
1,407,008 - OH686_06895 0.34 -0.7
1,407,008 - OH686_06895 0.34 -0.2
1,407,008 - OH686_06895 0.34 +0.6
1,407,010 + OH686_06895 0.35 -0.4
1,407,010 + OH686_06895 0.35 -0.8
1,407,010 + OH686_06895 0.35 +0.2
1,407,010 + OH686_06895 0.35 -0.6
1,407,010 + OH686_06895 0.35 -1.0
1,407,010 + OH686_06895 0.35 -0.5
1,407,010 + OH686_06895 0.35 +0.2
1,407,010 + OH686_06895 0.35 -0.0
1,407,010 + OH686_06895 0.35 +0.0
1,407,011 - OH686_06895 0.35 -0.5
1,407,011 - OH686_06895 0.35 +0.3
1,407,011 - OH686_06895 0.35 -0.9
1,407,011 - OH686_06895 0.35 -0.4
1,407,088 + OH686_06895 0.43 -0.4
1,407,088 + OH686_06895 0.43 +0.9
1,407,088 + OH686_06895 0.43 -0.1
1,407,088 + OH686_06895 0.43 -0.3
1,407,088 + OH686_06895 0.43 +0.9
1,407,088 + OH686_06895 0.43 -0.1
1,407,089 - OH686_06895 0.43 +0.2
1,407,089 - OH686_06895 0.43 -0.5
1,407,089 - OH686_06895 0.43 -0.8
1,407,089 - OH686_06895 0.43 -0.1
1,407,089 - OH686_06895 0.43 +0.5
1,407,089 - OH686_06895 0.43 +0.4
1,407,089 - OH686_06895 0.43 +0.3
1,407,089 - OH686_06895 0.43 -0.4
1,407,089 - OH686_06895 0.43 -0.2
1,407,089 - OH686_06895 0.43 -0.4
1,407,089 - OH686_06895 0.43 +1.2
1,407,433 + OH686_06895 0.81 +1.4
1,407,433 + OH686_06895 0.81 -1.4
1,407,434 - OH686_06895 0.81 -0.4
1,407,482 + OH686_06895 0.86 +1.1
1,407,482 + OH686_06895 0.86 -1.0
1,407,482 + OH686_06895 0.86 +1.9
1,407,482 + OH686_06895 0.86 -0.7
1,407,483 - OH686_06895 0.86 -1.1
1,407,483 - OH686_06895 0.86 -0.2
1,407,624 + -0.9
1,407,638 - -0.1
1,407,638 - -0.2
1,407,657 + -0.1
1,407,671 + -0.6
1,407,671 + +0.4
1,408,133 + OH686_06900 0.27 +0.4
1,408,133 + OH686_06900 0.27 +0.6
1,408,133 + OH686_06900 0.27 +0.1
1,408,133 + OH686_06900 0.27 +0.3
1,408,133 + OH686_06900 0.27 -0.4
1,408,133 + OH686_06900 0.27 -0.0
1,408,134 - OH686_06900 0.27 -0.3
1,408,134 - OH686_06900 0.27 +0.6
1,408,134 - OH686_06900 0.27 -0.1
1,408,147 + OH686_06900 0.28 -0.1
1,408,148 - OH686_06900 0.28 -0.1
1,408,148 - OH686_06900 0.28 -0.2
1,408,205 + OH686_06900 0.32 +0.9
1,408,575 - OH686_06900 0.57 +0.3
1,408,578 - OH686_06900 0.57 +1.1
1,408,578 - OH686_06900 0.57 +0.5
1,408,578 - OH686_06900 0.57 +1.0
1,408,578 - OH686_06900 0.57 +0.2
1,408,578 - OH686_06900 0.57 -0.6
1,408,578 - OH686_06900 0.57 -0.2

Or see this region's nucleotide sequence