Strain Fitness in Pseudomonas sp. S08-1 around OH686_04640

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04635 and OH686_04640 are separated by 129 nucleotidesOH686_04640 and OH686_04645 are separated by 75 nucleotidesOH686_04645 and OH686_04650 overlap by 4 nucleotidesOH686_04650 and OH686_04655 are separated by 3 nucleotides OH686_04635: OH686_04635 - Serine/threonine:Na+ symporter SstT, at 961,081 to 962,292 _04635 OH686_04640: OH686_04640 - hypothetical protein, at 962,422 to 962,625 _04640 OH686_04645: OH686_04645 - hypothetical protein, at 962,701 to 963,048 _04645 OH686_04650: OH686_04650 - probable uroporphyrin-III c-methyltransferase , at 963,045 to 963,434 _04650 OH686_04655: OH686_04655 - hypothetical protein, at 963,438 to 963,764 _04655 Position (kb) 962 963Strain fitness (log2 ratio) -2 -1 0 1 2at 961.590 kb on - strand, within OH686_04635at 961.590 kb on - strand, within OH686_04635at 961.631 kb on + strand, within OH686_04635at 961.631 kb on + strand, within OH686_04635at 961.631 kb on + strand, within OH686_04635at 961.631 kb on + strand, within OH686_04635at 961.631 kb on + strand, within OH686_04635at 961.631 kb on + strand, within OH686_04635at 961.632 kb on - strand, within OH686_04635at 961.632 kb on - strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.933 kb on + strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.934 kb on - strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.989 kb on + strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.990 kb on - strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.991 kb on + strand, within OH686_04635at 961.992 kb on - strand, within OH686_04635at 961.992 kb on - strand, within OH686_04635at 961.992 kb on - strand, within OH686_04635at 962.019 kb on + strand, within OH686_04635at 962.329 kb on + strandat 962.330 kb on - strandat 962.430 kb on + strandat 962.430 kb on + strandat 962.430 kb on + strandat 962.430 kb on + strandat 962.431 kb on - strandat 962.431 kb on - strandat 962.431 kb on - strandat 962.431 kb on - strandat 962.431 kb on - strandat 962.480 kb on + strand, within OH686_04640at 962.481 kb on - strand, within OH686_04640at 962.525 kb on + strand, within OH686_04640at 962.525 kb on + strand, within OH686_04640at 962.526 kb on - strand, within OH686_04640at 962.536 kb on + strand, within OH686_04640at 962.626 kb on + strandat 962.627 kb on - strandat 962.662 kb on + strandat 962.662 kb on + strandat 962.662 kb on + strandat 962.662 kb on + strandat 962.663 kb on - strandat 962.663 kb on - strandat 962.663 kb on - strandat 962.663 kb on - strandat 962.663 kb on - strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.671 kb on + strandat 962.672 kb on - strandat 962.672 kb on - strandat 962.672 kb on - strandat 962.706 kb on + strandat 962.707 kb on - strandat 962.707 kb on - strandat 962.707 kb on - strandat 962.707 kb on - strandat 962.707 kb on - strandat 962.723 kb on + strandat 962.723 kb on + strandat 962.724 kb on - strandat 962.724 kb on - strandat 962.724 kb on - strandat 962.724 kb on - strandat 962.724 kb on - strandat 962.724 kb on - strandat 962.724 kb on - strandat 962.752 kb on + strand, within OH686_04645at 962.752 kb on + strand, within OH686_04645at 962.753 kb on - strand, within OH686_04645at 962.785 kb on + strand, within OH686_04645at 962.785 kb on + strand, within OH686_04645at 962.786 kb on - strand, within OH686_04645at 962.786 kb on - strand, within OH686_04645at 962.786 kb on - strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.788 kb on + strand, within OH686_04645at 962.789 kb on - strand, within OH686_04645at 962.789 kb on - strand, within OH686_04645at 962.789 kb on - strand, within OH686_04645at 962.789 kb on - strand, within OH686_04645at 962.791 kb on + strand, within OH686_04645at 962.791 kb on + strand, within OH686_04645at 962.791 kb on + strand, within OH686_04645at 962.792 kb on - strand, within OH686_04645at 962.792 kb on - strand, within OH686_04645at 962.792 kb on - strand, within OH686_04645at 962.792 kb on - strand, within OH686_04645at 962.792 kb on - strand, within OH686_04645at 962.857 kb on + strand, within OH686_04645at 962.897 kb on + strand, within OH686_04645at 962.898 kb on - strand, within OH686_04645at 962.936 kb on + strand, within OH686_04645at 962.937 kb on - strand, within OH686_04645at 962.953 kb on + strand, within OH686_04645at 962.954 kb on - strand, within OH686_04645at 962.954 kb on - strand, within OH686_04645at 962.954 kb on - strand, within OH686_04645at 962.995 kb on + strand, within OH686_04645at 962.995 kb on + strand, within OH686_04645at 962.996 kb on - strand, within OH686_04645at 962.996 kb on - strand, within OH686_04645at 962.996 kb on - strand, within OH686_04645at 963.046 kb on + strandat 963.046 kb on + strandat 963.046 kb on + strandat 963.046 kb on + strandat 963.047 kb on - strandat 963.047 kb on - strandat 963.047 kb on - strandat 963.047 kb on - strandat 963.056 kb on - strandat 963.170 kb on + strand, within OH686_04650at 963.412 kb on + strandat 963.412 kb on + strandat 963.412 kb on + strandat 963.413 kb on - strandat 963.413 kb on - strandat 963.413 kb on - strandat 963.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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961,590 - OH686_04635 0.42 +0.2
961,590 - OH686_04635 0.42 +0.5
961,631 + OH686_04635 0.45 +0.3
961,631 + OH686_04635 0.45 +1.3
961,631 + OH686_04635 0.45 -0.0
961,631 + OH686_04635 0.45 +0.7
961,631 + OH686_04635 0.45 -0.3
961,631 + OH686_04635 0.45 -1.5
961,632 - OH686_04635 0.45 -0.3
961,632 - OH686_04635 0.45 -0.2
961,933 + OH686_04635 0.70 -0.3
961,933 + OH686_04635 0.70 -0.8
961,933 + OH686_04635 0.70 -0.3
961,933 + OH686_04635 0.70 -0.3
961,933 + OH686_04635 0.70 +0.5
961,933 + OH686_04635 0.70 -0.5
961,933 + OH686_04635 0.70 +0.1
961,933 + OH686_04635 0.70 -0.3
961,933 + OH686_04635 0.70 +0.4
961,934 - OH686_04635 0.70 +0.6
961,934 - OH686_04635 0.70 +1.0
961,934 - OH686_04635 0.70 +0.4
961,934 - OH686_04635 0.70 +0.1
961,934 - OH686_04635 0.70 -1.2
961,934 - OH686_04635 0.70 +0.1
961,934 - OH686_04635 0.70 +0.4
961,934 - OH686_04635 0.70 -0.8
961,989 + OH686_04635 0.75 +0.2
961,989 + OH686_04635 0.75 +0.6
961,989 + OH686_04635 0.75 -0.3
961,989 + OH686_04635 0.75 -0.1
961,989 + OH686_04635 0.75 +0.8
961,989 + OH686_04635 0.75 +2.0
961,989 + OH686_04635 0.75 +0.2
961,989 + OH686_04635 0.75 +0.7
961,990 - OH686_04635 0.75 -0.7
961,990 - OH686_04635 0.75 -1.7
961,990 - OH686_04635 0.75 -0.5
961,990 - OH686_04635 0.75 +1.1
961,990 - OH686_04635 0.75 -0.0
961,990 - OH686_04635 0.75 -0.8
961,990 - OH686_04635 0.75 +0.5
961,990 - OH686_04635 0.75 -0.0
961,990 - OH686_04635 0.75 +0.5
961,990 - OH686_04635 0.75 +0.2
961,990 - OH686_04635 0.75 -0.4
961,990 - OH686_04635 0.75 -0.3
961,990 - OH686_04635 0.75 -0.2
961,990 - OH686_04635 0.75 -0.5
961,991 + OH686_04635 0.75 -0.1
961,991 + OH686_04635 0.75 -0.8
961,991 + OH686_04635 0.75 -0.6
961,991 + OH686_04635 0.75 -0.3
961,991 + OH686_04635 0.75 +0.5
961,991 + OH686_04635 0.75 +0.6
961,991 + OH686_04635 0.75 -0.8
961,991 + OH686_04635 0.75 -0.9
961,991 + OH686_04635 0.75 +0.4
961,992 - OH686_04635 0.75 +0.7
961,992 - OH686_04635 0.75 -0.4
961,992 - OH686_04635 0.75 +0.6
962,019 + OH686_04635 0.77 +0.2
962,329 + -0.7
962,330 - +0.2
962,430 + -0.2
962,430 + -0.0
962,430 + -0.5
962,430 + +0.7
962,431 - -0.9
962,431 - -1.1
962,431 - +0.5
962,431 - +0.1
962,431 - +0.1
962,480 + OH686_04640 0.28 -1.4
962,481 - OH686_04640 0.29 -1.1
962,525 + OH686_04640 0.50 +0.3
962,525 + OH686_04640 0.50 -1.2
962,526 - OH686_04640 0.51 -0.9
962,536 + OH686_04640 0.56 -0.4
962,626 + +0.8
962,627 - -0.3
962,662 + -0.8
962,662 + +0.8
962,662 + +0.2
962,662 + -0.8
962,663 - -0.4
962,663 - -0.3
962,663 - -0.2
962,663 - +0.0
962,663 - +0.5
962,671 + +0.2
962,671 + +0.2
962,671 + +1.0
962,671 + +0.2
962,671 + -0.6
962,671 + -0.1
962,671 + +1.0
962,671 + +0.0
962,671 + -0.0
962,671 + -0.3
962,672 - +0.5
962,672 - -0.0
962,672 - -0.6
962,706 + +0.0
962,707 - +0.5
962,707 - +0.5
962,707 - +0.4
962,707 - +0.9
962,707 - -0.6
962,723 + -0.1
962,723 + +0.3
962,724 - -0.6
962,724 - +0.1
962,724 - -1.7
962,724 - +0.1
962,724 - -0.5
962,724 - -0.8
962,724 - -0.8
962,752 + OH686_04645 0.15 +0.1
962,752 + OH686_04645 0.15 -2.3
962,753 - OH686_04645 0.15 -0.5
962,785 + OH686_04645 0.24 +0.2
962,785 + OH686_04645 0.24 +0.5
962,786 - OH686_04645 0.24 +0.6
962,786 - OH686_04645 0.24 -1.6
962,786 - OH686_04645 0.24 -1.0
962,788 + OH686_04645 0.25 -0.9
962,788 + OH686_04645 0.25 -0.8
962,788 + OH686_04645 0.25 -0.2
962,788 + OH686_04645 0.25 -0.6
962,788 + OH686_04645 0.25 -0.6
962,788 + OH686_04645 0.25 -0.6
962,788 + OH686_04645 0.25 +0.5
962,788 + OH686_04645 0.25 +0.1
962,788 + OH686_04645 0.25 -0.2
962,789 - OH686_04645 0.25 +1.0
962,789 - OH686_04645 0.25 +0.2
962,789 - OH686_04645 0.25 -0.3
962,789 - OH686_04645 0.25 +0.3
962,791 + OH686_04645 0.26 +0.3
962,791 + OH686_04645 0.26 +1.1
962,791 + OH686_04645 0.26 +0.7
962,792 - OH686_04645 0.26 -0.8
962,792 - OH686_04645 0.26 +1.3
962,792 - OH686_04645 0.26 -0.7
962,792 - OH686_04645 0.26 +1.3
962,792 - OH686_04645 0.26 +0.2
962,857 + OH686_04645 0.45 -0.1
962,897 + OH686_04645 0.56 -0.6
962,898 - OH686_04645 0.57 +0.3
962,936 + OH686_04645 0.68 -1.4
962,937 - OH686_04645 0.68 -1.2
962,953 + OH686_04645 0.72 -1.2
962,954 - OH686_04645 0.73 -0.9
962,954 - OH686_04645 0.73 -0.6
962,954 - OH686_04645 0.73 -0.1
962,995 + OH686_04645 0.84 +0.2
962,995 + OH686_04645 0.84 +0.1
962,996 - OH686_04645 0.85 +0.8
962,996 - OH686_04645 0.85 +2.5
962,996 - OH686_04645 0.85 +0.5
963,046 + +0.4
963,046 + +0.2
963,046 + -1.4
963,046 + -0.4
963,047 - -0.4
963,047 - +0.8
963,047 - -0.9
963,047 - +0.2
963,056 - -0.3
963,170 + OH686_04650 0.32 +0.2
963,412 + +0.0
963,412 + +0.2
963,412 + +0.8
963,413 - +0.5
963,413 - +1.3
963,413 - +0.0
963,439 + +1.6

Or see this region's nucleotide sequence