Strain Fitness in Pseudomonas sp. S08-1 around OH686_04415

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04410 and OH686_04415 are separated by 46 nucleotidesOH686_04415 and OH686_04420 are separated by 14 nucleotides OH686_04410: OH686_04410 - type II secretion system protein D, at 916,218 to 918,179 _04410 OH686_04415: OH686_04415 - O-succinylhomoserine sulfhydrylase, at 918,226 to 919,437 _04415 OH686_04420: OH686_04420 - amidophosphoribosyltransferase, at 919,452 to 920,957 _04420 Position (kb) 918 919 920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 917.257 kb on + strand, within OH686_04410at 917.257 kb on + strand, within OH686_04410at 917.573 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.734 kb on + strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.914 kb on + strand, within OH686_04410at 917.915 kb on - strand, within OH686_04410at 918.057 kb on + strandat 918.057 kb on + strandat 918.057 kb on + strandat 918.066 kb on - strandat 918.177 kb on + strandat 918.178 kb on - strandat 918.178 kb on - strandat 918.548 kb on + strand, within OH686_04415at 918.548 kb on + strand, within OH686_04415at 918.548 kb on + strand, within OH686_04415at 918.549 kb on - strand, within OH686_04415at 918.551 kb on + strand, within OH686_04415at 918.551 kb on + strand, within OH686_04415at 918.551 kb on + strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 919.013 kb on + strand, within OH686_04415at 919.044 kb on - strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.227 kb on + strand, within OH686_04415at 919.228 kb on - strand, within OH686_04415at 919.228 kb on - strand, within OH686_04415at 919.228 kb on - strand, within OH686_04415at 919.228 kb on - strand, within OH686_04415at 919.228 kb on - strand, within OH686_04415at 919.228 kb on - strand, within OH686_04415at 919.229 kb on + strand, within OH686_04415at 919.230 kb on - strand, within OH686_04415at 919.238 kb on + strand, within OH686_04415at 919.238 kb on + strand, within OH686_04415at 919.238 kb on + strand, within OH686_04415at 919.239 kb on - strand, within OH686_04415at 919.239 kb on - strand, within OH686_04415at 919.239 kb on - strand, within OH686_04415at 919.302 kb on - strand, within OH686_04415at 919.302 kb on - strand, within OH686_04415at 919.302 kb on - strand, within OH686_04415at 919.302 kb on - strand, within OH686_04415at 919.302 kb on - strand, within OH686_04415at 919.975 kb on + strand, within OH686_04420

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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917,257 + OH686_04410 0.53 -0.1
917,257 + OH686_04410 0.53 +0.8
917,573 + OH686_04410 0.69 +0.4
917,628 + OH686_04410 0.72 +0.3
917,628 + OH686_04410 0.72 +0.0
917,628 + OH686_04410 0.72 +0.0
917,628 + OH686_04410 0.72 -0.2
917,628 + OH686_04410 0.72 -0.2
917,628 + OH686_04410 0.72 +0.2
917,629 - OH686_04410 0.72 -0.3
917,629 - OH686_04410 0.72 -0.5
917,629 - OH686_04410 0.72 +0.1
917,629 - OH686_04410 0.72 +0.6
917,629 - OH686_04410 0.72 -2.2
917,629 - OH686_04410 0.72 -0.5
917,629 - OH686_04410 0.72 +1.0
917,734 + OH686_04410 0.77 +0.2
917,735 - OH686_04410 0.77 -0.6
917,735 - OH686_04410 0.77 -0.4
917,735 - OH686_04410 0.77 +0.1
917,735 - OH686_04410 0.77 -0.3
917,914 + OH686_04410 0.86 +0.4
917,915 - OH686_04410 0.86 -0.4
918,057 + -0.3
918,057 + +0.8
918,057 + -2.0
918,066 - +0.3
918,177 + +0.2
918,178 - +0.6
918,178 - -0.1
918,548 + OH686_04415 0.27 -2.5
918,548 + OH686_04415 0.27 -3.2
918,548 + OH686_04415 0.27 -2.3
918,549 - OH686_04415 0.27 -0.0
918,551 + OH686_04415 0.27 -3.8
918,551 + OH686_04415 0.27 -2.5
918,551 + OH686_04415 0.27 -3.1
918,552 - OH686_04415 0.27 -2.1
918,552 - OH686_04415 0.27 -2.4
918,552 - OH686_04415 0.27 -2.9
918,552 - OH686_04415 0.27 -1.7
918,552 - OH686_04415 0.27 -1.8
918,552 - OH686_04415 0.27 -0.6
918,779 + OH686_04415 0.46 -3.1
918,779 + OH686_04415 0.46 -2.7
918,779 + OH686_04415 0.46 -3.4
918,779 + OH686_04415 0.46 -3.8
918,779 + OH686_04415 0.46 -2.0
918,780 - OH686_04415 0.46 -1.9
918,780 - OH686_04415 0.46 -3.3
918,780 - OH686_04415 0.46 -1.9
918,780 - OH686_04415 0.46 -0.5
918,780 - OH686_04415 0.46 +0.7
918,780 - OH686_04415 0.46 -2.4
919,013 + OH686_04415 0.65 -2.8
919,044 - OH686_04415 0.67 -0.6
919,227 + OH686_04415 0.83 -1.7
919,227 + OH686_04415 0.83 -0.6
919,227 + OH686_04415 0.83 -1.6
919,227 + OH686_04415 0.83 -1.8
919,227 + OH686_04415 0.83 -3.7
919,227 + OH686_04415 0.83 -3.5
919,227 + OH686_04415 0.83 -2.8
919,227 + OH686_04415 0.83 -3.7
919,227 + OH686_04415 0.83 -3.4
919,227 + OH686_04415 0.83 -1.8
919,227 + OH686_04415 0.83 -4.0
919,228 - OH686_04415 0.83 -2.2
919,228 - OH686_04415 0.83 -2.4
919,228 - OH686_04415 0.83 -2.4
919,228 - OH686_04415 0.83 -3.6
919,228 - OH686_04415 0.83 -4.1
919,228 - OH686_04415 0.83 -2.3
919,229 + OH686_04415 0.83 -4.3
919,230 - OH686_04415 0.83 -2.8
919,238 + OH686_04415 0.83 -0.4
919,238 + OH686_04415 0.83 -2.7
919,238 + OH686_04415 0.83 -4.6
919,239 - OH686_04415 0.84 -4.3
919,239 - OH686_04415 0.84 -4.0
919,239 - OH686_04415 0.84 -1.5
919,302 - OH686_04415 0.89 -0.8
919,302 - OH686_04415 0.89 -2.7
919,302 - OH686_04415 0.89 -1.0
919,302 - OH686_04415 0.89 -1.4
919,302 - OH686_04415 0.89 -2.6
919,975 + OH686_04420 0.35 -0.0

Or see this region's nucleotide sequence