Strain Fitness in Pseudomonas sp. S08-1 around OH686_04115

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04110 and OH686_04115 are separated by 54 nucleotidesOH686_04115 and OH686_04120 overlap by 4 nucleotidesOH686_04120 and OH686_04125 are separated by 15 nucleotides OH686_04110: OH686_04110 - hypothetical protein, at 845,386 to 847,857 _04110 OH686_04115: OH686_04115 - hypothetical protein, at 847,912 to 848,814 _04115 OH686_04120: OH686_04120 - RNA polymerase sigma factor RpoE, at 848,811 to 849,380 _04120 OH686_04125: OH686_04125 - Putative von Willebrand factor, vWF type A domain protein, at 849,396 to 851,138 _04125 Position (kb) 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 846.937 kb on + strand, within OH686_04110at 847.054 kb on + strand, within OH686_04110at 847.055 kb on - strand, within OH686_04110at 847.055 kb on - strand, within OH686_04110at 847.055 kb on - strand, within OH686_04110at 847.055 kb on - strand, within OH686_04110at 847.127 kb on + strand, within OH686_04110at 847.128 kb on - strand, within OH686_04110at 847.128 kb on - strand, within OH686_04110at 847.224 kb on - strand, within OH686_04110at 847.224 kb on - strand, within OH686_04110at 847.295 kb on + strand, within OH686_04110at 847.295 kb on + strand, within OH686_04110at 847.296 kb on - strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.330 kb on + strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.331 kb on - strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.364 kb on + strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.365 kb on - strand, within OH686_04110at 847.373 kb on + strand, within OH686_04110at 847.373 kb on + strand, within OH686_04110at 847.373 kb on + strand, within OH686_04110at 847.373 kb on + strand, within OH686_04110at 847.374 kb on - strand, within OH686_04110at 847.374 kb on - strand, within OH686_04110at 847.561 kb on + strand, within OH686_04110at 847.561 kb on + strand, within OH686_04110at 847.562 kb on - strand, within OH686_04110at 847.562 kb on - strand, within OH686_04110at 847.562 kb on - strand, within OH686_04110at 847.617 kb on - strandat 847.810 kb on + strandat 847.811 kb on - strandat 847.811 kb on - strandat 847.811 kb on - strandat 847.893 kb on + strandat 848.092 kb on + strand, within OH686_04115at 848.093 kb on - strand, within OH686_04115at 848.093 kb on - strand, within OH686_04115at 848.093 kb on - strand, within OH686_04115at 848.134 kb on + strand, within OH686_04115at 848.821 kb on - strandat 848.859 kb on + strandat 848.859 kb on + strandat 848.859 kb on + strandat 848.859 kb on + strandat 848.859 kb on + strandat 848.859 kb on + strandat 848.875 kb on + strand, within OH686_04120at 848.909 kb on + strand, within OH686_04120at 848.910 kb on - strand, within OH686_04120at 849.091 kb on + strand, within OH686_04120at 849.091 kb on + strand, within OH686_04120at 849.092 kb on - strand, within OH686_04120at 849.164 kb on - strand, within OH686_04120at 849.313 kb on + strand, within OH686_04120at 849.313 kb on + strand, within OH686_04120at 849.314 kb on - strand, within OH686_04120at 849.398 kb on - strandat 849.398 kb on - strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.547 kb on + strandat 849.548 kb on - strandat 849.548 kb on - strandat 849.548 kb on - strandat 849.548 kb on - strandat 849.548 kb on - strandat 849.548 kb on - strandat 849.691 kb on + strand, within OH686_04125at 849.691 kb on + strand, within OH686_04125at 849.691 kb on + strand, within OH686_04125at 849.691 kb on + strand, within OH686_04125at 849.691 kb on + strand, within OH686_04125at 849.691 kb on + strand, within OH686_04125at 849.691 kb on + strand, within OH686_04125at 849.692 kb on - strand, within OH686_04125at 849.692 kb on - strand, within OH686_04125at 849.751 kb on + strand, within OH686_04125at 849.800 kb on - strand, within OH686_04125at 849.800 kb on - strand, within OH686_04125at 849.800 kb on - strand, within OH686_04125

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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846,937 + OH686_04110 0.63 +0.8
847,054 + OH686_04110 0.67 +0.7
847,055 - OH686_04110 0.68 +0.4
847,055 - OH686_04110 0.68 -0.6
847,055 - OH686_04110 0.68 +1.6
847,055 - OH686_04110 0.68 +0.8
847,127 + OH686_04110 0.70 -0.6
847,128 - OH686_04110 0.70 +0.6
847,128 - OH686_04110 0.70 +0.2
847,224 - OH686_04110 0.74 +0.5
847,224 - OH686_04110 0.74 -0.1
847,295 + OH686_04110 0.77 +0.6
847,295 + OH686_04110 0.77 +0.0
847,296 - OH686_04110 0.77 +0.3
847,330 + OH686_04110 0.79 -1.3
847,330 + OH686_04110 0.79 +1.2
847,330 + OH686_04110 0.79 +0.3
847,330 + OH686_04110 0.79 +0.2
847,330 + OH686_04110 0.79 +0.0
847,330 + OH686_04110 0.79 +0.0
847,330 + OH686_04110 0.79 -0.5
847,330 + OH686_04110 0.79 -0.4
847,330 + OH686_04110 0.79 -0.2
847,331 - OH686_04110 0.79 -0.9
847,331 - OH686_04110 0.79 -0.3
847,331 - OH686_04110 0.79 -0.8
847,331 - OH686_04110 0.79 -0.1
847,331 - OH686_04110 0.79 +0.3
847,331 - OH686_04110 0.79 +0.7
847,331 - OH686_04110 0.79 +0.0
847,331 - OH686_04110 0.79 -0.2
847,331 - OH686_04110 0.79 +0.8
847,331 - OH686_04110 0.79 -0.2
847,364 + OH686_04110 0.80 +0.4
847,364 + OH686_04110 0.80 -2.0
847,364 + OH686_04110 0.80 -0.2
847,364 + OH686_04110 0.80 +0.5
847,364 + OH686_04110 0.80 +0.5
847,364 + OH686_04110 0.80 +2.0
847,364 + OH686_04110 0.80 -1.8
847,364 + OH686_04110 0.80 -0.6
847,364 + OH686_04110 0.80 +0.3
847,364 + OH686_04110 0.80 +0.4
847,364 + OH686_04110 0.80 +1.0
847,365 - OH686_04110 0.80 -0.2
847,365 - OH686_04110 0.80 -0.3
847,365 - OH686_04110 0.80 -0.9
847,365 - OH686_04110 0.80 +0.1
847,365 - OH686_04110 0.80 +0.6
847,365 - OH686_04110 0.80 +0.2
847,365 - OH686_04110 0.80 +0.8
847,365 - OH686_04110 0.80 -0.3
847,365 - OH686_04110 0.80 +0.1
847,373 + OH686_04110 0.80 -0.6
847,373 + OH686_04110 0.80 +0.2
847,373 + OH686_04110 0.80 +0.7
847,373 + OH686_04110 0.80 -0.2
847,374 - OH686_04110 0.80 -0.6
847,374 - OH686_04110 0.80 -0.5
847,561 + OH686_04110 0.88 -0.8
847,561 + OH686_04110 0.88 +0.3
847,562 - OH686_04110 0.88 -0.0
847,562 - OH686_04110 0.88 +1.4
847,562 - OH686_04110 0.88 -0.8
847,617 - -0.0
847,810 + +0.5
847,811 - +0.9
847,811 - -0.0
847,811 - +0.3
847,893 + -0.4
848,092 + OH686_04115 0.20 -1.2
848,093 - OH686_04115 0.20 -0.8
848,093 - OH686_04115 0.20 -0.5
848,093 - OH686_04115 0.20 +1.2
848,134 + OH686_04115 0.25 -1.4
848,821 - -0.4
848,859 + -0.2
848,859 + +0.5
848,859 + -1.1
848,859 + -0.0
848,859 + -0.7
848,859 + +0.1
848,875 + OH686_04120 0.11 -0.5
848,909 + OH686_04120 0.17 +0.0
848,910 - OH686_04120 0.17 -0.3
849,091 + OH686_04120 0.49 +0.4
849,091 + OH686_04120 0.49 +0.8
849,092 - OH686_04120 0.49 -1.5
849,164 - OH686_04120 0.62 +1.0
849,313 + OH686_04120 0.88 +0.8
849,313 + OH686_04120 0.88 -0.5
849,314 - OH686_04120 0.88 -0.4
849,398 - -0.1
849,398 - +0.1
849,547 + -0.4
849,547 + -1.5
849,547 + +0.7
849,547 + -0.2
849,547 + +0.6
849,547 + +1.2
849,547 + -0.6
849,547 + +1.5
849,547 + +1.0
849,548 - -0.1
849,548 - +0.1
849,548 - +0.5
849,548 - +0.5
849,548 - -0.7
849,548 - -0.7
849,691 + OH686_04125 0.17 -0.2
849,691 + OH686_04125 0.17 -0.9
849,691 + OH686_04125 0.17 -0.4
849,691 + OH686_04125 0.17 +0.1
849,691 + OH686_04125 0.17 -0.1
849,691 + OH686_04125 0.17 -1.6
849,691 + OH686_04125 0.17 -1.4
849,692 - OH686_04125 0.17 -0.5
849,692 - OH686_04125 0.17 -0.0
849,751 + OH686_04125 0.20 +0.3
849,800 - OH686_04125 0.23 -0.0
849,800 - OH686_04125 0.23 -0.8
849,800 - OH686_04125 0.23 +0.2

Or see this region's nucleotide sequence