Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_03625 and OH686_03630 are separated by 176 nucleotides OH686_03630 and OH686_03635 are separated by 136 nucleotides OH686_03635 and OH686_03640 are separated by 147 nucleotides
OH686_03625: OH686_03625 - Peptidyl-prolyl cis-trans isomerase PpiD , at 749,570 to 751,426
_03625
OH686_03630: OH686_03630 - DNA-binding protein HU-beta, at 751,603 to 751,875
_03630
OH686_03635: OH686_03635 - endopeptidase La, at 752,012 to 754,408
_03635
OH686_03640: OH686_03640 - ATP-dependent Clp protease, ATP-binding subunit ClpX, at 754,556 to 755,836
_03640
Position (kb) 752
753
754
755 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.091 kb on - strand, within OH686_03625 at 751.138 kb on + strand, within OH686_03625 at 751.139 kb on - strand, within OH686_03625 at 751.523 kb on + strand at 751.524 kb on - strand at 751.911 kb on - strand at 751.911 kb on - strand at 751.924 kb on - strand at 751.924 kb on - strand at 751.960 kb on - strand at 751.960 kb on - strand at 751.960 kb on - strand at 751.960 kb on - strand at 751.972 kb on - strand at 751.972 kb on - strand at 751.974 kb on - strand at 751.974 kb on - strand at 751.991 kb on - strand at 752.054 kb on - strand at 752.143 kb on + strand at 752.152 kb on + strand at 752.173 kb on + strand at 752.174 kb on - strand at 752.174 kb on - strand at 752.174 kb on - strand at 752.256 kb on - strand, within OH686_03635 at 752.721 kb on - strand, within OH686_03635 at 752.721 kb on - strand, within OH686_03635 at 752.721 kb on - strand, within OH686_03635 at 752.817 kb on + strand, within OH686_03635 at 752.817 kb on + strand, within OH686_03635 at 752.817 kb on + strand, within OH686_03635 at 752.817 kb on + strand, within OH686_03635 at 752.818 kb on - strand, within OH686_03635 at 752.818 kb on - strand, within OH686_03635 at 752.818 kb on - strand, within OH686_03635 at 752.820 kb on + strand, within OH686_03635 at 752.821 kb on - strand, within OH686_03635 at 752.907 kb on + strand, within OH686_03635 at 752.907 kb on + strand, within OH686_03635 at 752.907 kb on + strand, within OH686_03635 at 752.908 kb on - strand, within OH686_03635 at 752.908 kb on - strand, within OH686_03635 at 752.908 kb on - strand, within OH686_03635 at 752.908 kb on - strand, within OH686_03635 at 752.920 kb on + strand, within OH686_03635 at 752.944 kb on - strand, within OH686_03635 at 752.944 kb on - strand, within OH686_03635 at 753.039 kb on + strand, within OH686_03635 at 753.054 kb on + strand, within OH686_03635 at 753.054 kb on + strand, within OH686_03635 at 753.055 kb on - strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.228 kb on + strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.229 kb on - strand, within OH686_03635 at 753.232 kb on + strand, within OH686_03635 at 753.233 kb on - strand, within OH686_03635 at 753.540 kb on + strand, within OH686_03635 at 753.540 kb on + strand, within OH686_03635 at 753.541 kb on - strand, within OH686_03635 at 753.541 kb on - strand, within OH686_03635 at 753.541 kb on - strand, within OH686_03635 at 753.541 kb on - strand, within OH686_03635 at 753.541 kb on - strand, within OH686_03635 at 753.541 kb on - strand, within OH686_03635 at 753.631 kb on + strand, within OH686_03635 at 753.631 kb on + strand, within OH686_03635 at 753.632 kb on - strand, within OH686_03635 at 753.632 kb on - strand, within OH686_03635 at 753.632 kb on - strand, within OH686_03635 at 753.735 kb on + strand, within OH686_03635 at 753.735 kb on + strand, within OH686_03635 at 753.736 kb on - strand, within OH686_03635 at 753.738 kb on + strand, within OH686_03635 at 753.738 kb on + strand, within OH686_03635 at 753.739 kb on - strand, within OH686_03635 at 753.739 kb on - strand, within OH686_03635 at 753.739 kb on - strand, within OH686_03635 at 753.739 kb on - strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.995 kb on + strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.996 kb on - strand, within OH686_03635 at 753.999 kb on + strand, within OH686_03635 at 753.999 kb on + strand, within OH686_03635 at 753.999 kb on + strand, within OH686_03635 at 753.999 kb on + strand, within OH686_03635 at 753.999 kb on + strand, within OH686_03635 at 754.000 kb on - strand, within OH686_03635 at 754.000 kb on - strand, within OH686_03635 at 754.000 kb on - strand, within OH686_03635 at 754.216 kb on - strand at 754.357 kb on - strand at 754.421 kb on - strand at 754.454 kb on - strand at 754.466 kb on - strand at 754.466 kb on - strand at 754.548 kb on + strand at 754.599 kb on + strand at 754.599 kb on + strand at 754.600 kb on - strand at 754.600 kb on - strand at 754.684 kb on - strand, within OH686_03640 at 755.289 kb on + strand, within OH686_03640 at 755.315 kb on + strand, within OH686_03640 at 755.315 kb on + strand, within OH686_03640 at 755.316 kb on - strand, within OH686_03640 at 755.316 kb on - strand, within OH686_03640 at 755.322 kb on + strand, within OH686_03640
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 751,091 - OH686_03625 0.82 -0.9 751,138 + OH686_03625 0.84 +0.6 751,139 - OH686_03625 0.84 -0.8 751,523 + -0.4 751,524 - +0.4 751,911 - -0.4 751,911 - +0.6 751,924 - +1.0 751,924 - +1.3 751,960 - +0.6 751,960 - +1.3 751,960 - -0.2 751,960 - +0.4 751,972 - +0.6 751,972 - -0.7 751,974 - +0.3 751,974 - +1.0 751,991 - -0.0 752,054 - +0.7 752,143 + -0.9 752,152 + -0.8 752,173 + +2.2 752,174 - -1.6 752,174 - -0.5 752,174 - +0.5 752,256 - OH686_03635 0.10 -0.6 752,721 - OH686_03635 0.30 -1.4 752,721 - OH686_03635 0.30 -1.2 752,721 - OH686_03635 0.30 -1.8 752,817 + OH686_03635 0.34 -1.8 752,817 + OH686_03635 0.34 -1.7 752,817 + OH686_03635 0.34 -0.0 752,817 + OH686_03635 0.34 +0.1 752,818 - OH686_03635 0.34 -1.0 752,818 - OH686_03635 0.34 -0.0 752,818 - OH686_03635 0.34 -0.0 752,820 + OH686_03635 0.34 -1.6 752,821 - OH686_03635 0.34 -0.4 752,907 + OH686_03635 0.37 -0.8 752,907 + OH686_03635 0.37 -0.5 752,907 + OH686_03635 0.37 -0.6 752,908 - OH686_03635 0.37 -0.6 752,908 - OH686_03635 0.37 -0.4 752,908 - OH686_03635 0.37 -0.0 752,908 - OH686_03635 0.37 -0.6 752,920 + OH686_03635 0.38 -0.6 752,944 - OH686_03635 0.39 -0.8 752,944 - OH686_03635 0.39 -0.0 753,039 + OH686_03635 0.43 -1.7 753,054 + OH686_03635 0.43 +1.0 753,054 + OH686_03635 0.43 -0.2 753,055 - OH686_03635 0.44 -0.8 753,228 + OH686_03635 0.51 -0.6 753,228 + OH686_03635 0.51 -0.4 753,228 + OH686_03635 0.51 -1.2 753,228 + OH686_03635 0.51 +1.2 753,228 + OH686_03635 0.51 -1.4 753,228 + OH686_03635 0.51 -1.8 753,228 + OH686_03635 0.51 -1.6 753,228 + OH686_03635 0.51 -0.0 753,228 + OH686_03635 0.51 -0.0 753,228 + OH686_03635 0.51 -1.0 753,228 + OH686_03635 0.51 -0.4 753,228 + OH686_03635 0.51 -0.4 753,228 + OH686_03635 0.51 -0.6 753,229 - OH686_03635 0.51 -0.0 753,229 - OH686_03635 0.51 +0.6 753,229 - OH686_03635 0.51 -0.0 753,229 - OH686_03635 0.51 -2.4 753,229 - OH686_03635 0.51 -1.2 753,229 - OH686_03635 0.51 -0.6 753,229 - OH686_03635 0.51 -0.6 753,229 - OH686_03635 0.51 -1.0 753,229 - OH686_03635 0.51 -1.9 753,229 - OH686_03635 0.51 -0.4 753,229 - OH686_03635 0.51 -2.2 753,229 - OH686_03635 0.51 -0.5 753,229 - OH686_03635 0.51 +1.5 753,229 - OH686_03635 0.51 +1.7 753,229 - OH686_03635 0.51 -0.0 753,229 - OH686_03635 0.51 -0.6 753,229 - OH686_03635 0.51 -0.0 753,232 + OH686_03635 0.51 -0.0 753,233 - OH686_03635 0.51 -0.4 753,540 + OH686_03635 0.64 -0.8 753,540 + OH686_03635 0.64 -1.0 753,541 - OH686_03635 0.64 -1.0 753,541 - OH686_03635 0.64 -0.6 753,541 - OH686_03635 0.64 -1.4 753,541 - OH686_03635 0.64 +1.2 753,541 - OH686_03635 0.64 -1.5 753,541 - OH686_03635 0.64 -0.6 753,631 + OH686_03635 0.68 -1.4 753,631 + OH686_03635 0.68 -1.0 753,632 - OH686_03635 0.68 -1.4 753,632 - OH686_03635 0.68 -1.9 753,632 - OH686_03635 0.68 -0.0 753,735 + OH686_03635 0.72 -1.0 753,735 + OH686_03635 0.72 -1.0 753,736 - OH686_03635 0.72 +1.0 753,738 + OH686_03635 0.72 +0.7 753,738 + OH686_03635 0.72 -0.0 753,739 - OH686_03635 0.72 -0.6 753,739 - OH686_03635 0.72 +0.2 753,739 - OH686_03635 0.72 -0.6 753,739 - OH686_03635 0.72 -0.4 753,995 + OH686_03635 0.83 +0.4 753,995 + OH686_03635 0.83 +0.4 753,995 + OH686_03635 0.83 -0.0 753,995 + OH686_03635 0.83 -1.0 753,995 + OH686_03635 0.83 -0.4 753,995 + OH686_03635 0.83 -0.0 753,995 + OH686_03635 0.83 -2.2 753,996 - OH686_03635 0.83 -1.5 753,996 - OH686_03635 0.83 -1.7 753,996 - OH686_03635 0.83 -1.7 753,996 - OH686_03635 0.83 -0.4 753,996 - OH686_03635 0.83 -1.0 753,996 - OH686_03635 0.83 -0.4 753,996 - OH686_03635 0.83 -0.8 753,996 - OH686_03635 0.83 +0.6 753,996 - OH686_03635 0.83 -0.0 753,996 - OH686_03635 0.83 -0.0 753,999 + OH686_03635 0.83 -0.4 753,999 + OH686_03635 0.83 -1.0 753,999 + OH686_03635 0.83 -1.5 753,999 + OH686_03635 0.83 +0.4 753,999 + OH686_03635 0.83 +0.1 754,000 - OH686_03635 0.83 -0.4 754,000 - OH686_03635 0.83 -1.3 754,000 - OH686_03635 0.83 +0.6 754,216 - -0.7 754,357 - +1.0 754,421 - +0.4 754,454 - -1.1 754,466 - -0.1 754,466 - -0.3 754,548 + -0.4 754,599 + -1.2 754,599 + -0.0 754,600 - -0.0 754,600 - +0.5 754,684 - OH686_03640 0.10 -0.0 755,289 + OH686_03640 0.57 -0.0 755,315 + OH686_03640 0.59 -0.0 755,315 + OH686_03640 0.59 -0.2 755,316 - OH686_03640 0.59 -1.2 755,316 - OH686_03640 0.59 -0.9 755,322 + OH686_03640 0.60 -0.6
Or see this region's nucleotide sequence