Strain Fitness in Pseudomonas sp. S08-1 around OH686_01030

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_01020 and OH686_01025 are separated by 133 nucleotidesOH686_01025 and OH686_01030 are separated by 24 nucleotidesOH686_01030 and OH686_01035 are separated by 126 nucleotidesOH686_01035 and OH686_01040 overlap by 1 nucleotides OH686_01020: OH686_01020 - Alcohol dehydrogenase, zinc-containing, at 213,663 to 214,685 _01020 OH686_01025: OH686_01025 - hypothetical protein, at 214,819 to 215,385 _01025 OH686_01030: OH686_01030 - ABC-type siderophore export system, fused ATPase and permease components, at 215,410 to 217,080 _01030 OH686_01035: OH686_01035 - MbtH-like NRPS chaperone, at 217,207 to 217,410 _01035 OH686_01040: OH686_01040 - hypothetical protein, at 217,410 to 218,135 _01040 Position (kb) 215 216 217 218Strain fitness (log2 ratio) -2 -1 0 1at 214.673 kb on + strandat 214.674 kb on - strandat 214.683 kb on + strandat 214.683 kb on + strandat 214.683 kb on + strandat 214.683 kb on + strandat 214.683 kb on + strandat 214.683 kb on + strandat 214.683 kb on + strandat 214.684 kb on - strandat 214.684 kb on - strandat 214.684 kb on - strandat 214.684 kb on - strandat 214.747 kb on + strandat 214.748 kb on - strandat 214.748 kb on - strandat 214.862 kb on + strandat 214.863 kb on - strandat 214.906 kb on + strand, within OH686_01025at 214.906 kb on + strand, within OH686_01025at 214.906 kb on + strand, within OH686_01025at 214.931 kb on + strand, within OH686_01025at 214.931 kb on + strand, within OH686_01025at 214.931 kb on + strand, within OH686_01025at 214.931 kb on + strand, within OH686_01025at 214.931 kb on + strand, within OH686_01025at 214.932 kb on - strand, within OH686_01025at 215.047 kb on + strand, within OH686_01025at 215.250 kb on + strand, within OH686_01025at 215.250 kb on + strand, within OH686_01025at 215.272 kb on + strand, within OH686_01025at 215.272 kb on + strand, within OH686_01025at 215.273 kb on - strand, within OH686_01025at 215.761 kb on - strand, within OH686_01030at 215.780 kb on - strand, within OH686_01030at 215.780 kb on - strand, within OH686_01030at 215.780 kb on - strand, within OH686_01030at 215.782 kb on - strand, within OH686_01030at 215.798 kb on - strand, within OH686_01030at 215.831 kb on - strand, within OH686_01030at 215.966 kb on - strand, within OH686_01030at 215.966 kb on - strand, within OH686_01030at 217.103 kb on + strandat 217.103 kb on + strandat 217.104 kb on - strandat 217.104 kb on - strandat 217.143 kb on - strandat 217.175 kb on + strandat 217.175 kb on + strandat 217.176 kb on - strandat 217.176 kb on - strandat 217.192 kb on + strandat 217.192 kb on + strandat 217.192 kb on + strandat 217.193 kb on - strandat 217.193 kb on - strandat 217.201 kb on + strandat 217.264 kb on + strand, within OH686_01035at 217.264 kb on + strand, within OH686_01035at 217.265 kb on - strand, within OH686_01035at 217.265 kb on - strand, within OH686_01035at 217.265 kb on - strand, within OH686_01035at 217.282 kb on + strand, within OH686_01035at 217.282 kb on + strand, within OH686_01035at 217.282 kb on + strand, within OH686_01035at 217.282 kb on + strand, within OH686_01035at 217.282 kb on + strand, within OH686_01035at 217.283 kb on - strand, within OH686_01035at 217.283 kb on - strand, within OH686_01035at 217.283 kb on - strand, within OH686_01035at 217.455 kb on + strandat 217.456 kb on - strandat 217.456 kb on - strandat 217.456 kb on - strandat 217.456 kb on - strandat 217.456 kb on - strandat 217.544 kb on - strand, within OH686_01040at 217.544 kb on - strand, within OH686_01040at 217.611 kb on + strand, within OH686_01040at 218.037 kb on + strand, within OH686_01040at 218.037 kb on + strand, within OH686_01040at 218.037 kb on + strand, within OH686_01040at 218.038 kb on - strand, within OH686_01040at 218.038 kb on - strand, within OH686_01040at 218.038 kb on - strand, within OH686_01040at 218.038 kb on - strand, within OH686_01040at 218.038 kb on - strand, within OH686_01040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
214,673 + -0.1
214,674 - -0.0
214,683 + -0.5
214,683 + +0.4
214,683 + +0.7
214,683 + +0.2
214,683 + +0.9
214,683 + -0.1
214,683 + +0.3
214,684 - +1.0
214,684 - +0.3
214,684 - +0.3
214,684 - -1.0
214,747 + -0.2
214,748 - -1.5
214,748 - -0.3
214,862 + +1.3
214,863 - +0.4
214,906 + OH686_01025 0.15 +1.0
214,906 + OH686_01025 0.15 -0.2
214,906 + OH686_01025 0.15 +0.2
214,931 + OH686_01025 0.20 -0.2
214,931 + OH686_01025 0.20 -0.2
214,931 + OH686_01025 0.20 +0.2
214,931 + OH686_01025 0.20 +1.3
214,931 + OH686_01025 0.20 -0.3
214,932 - OH686_01025 0.20 -0.6
215,047 + OH686_01025 0.40 +0.2
215,250 + OH686_01025 0.76 -1.2
215,250 + OH686_01025 0.76 -0.8
215,272 + OH686_01025 0.80 +0.8
215,272 + OH686_01025 0.80 +1.4
215,273 - OH686_01025 0.80 -0.2
215,761 - OH686_01030 0.21 -0.6
215,780 - OH686_01030 0.22 -0.6
215,780 - OH686_01030 0.22 -1.6
215,780 - OH686_01030 0.22 -0.3
215,782 - OH686_01030 0.22 -1.5
215,798 - OH686_01030 0.23 -1.5
215,831 - OH686_01030 0.25 +0.0
215,966 - OH686_01030 0.33 +0.0
215,966 - OH686_01030 0.33 -0.6
217,103 + -0.5
217,103 + -1.2
217,104 - +0.0
217,104 - -0.3
217,143 - -0.3
217,175 + -2.4
217,175 + -0.7
217,176 - -0.2
217,176 - -1.2
217,192 + +0.3
217,192 + -1.3
217,192 + -0.4
217,193 - +0.0
217,193 - -0.6
217,201 + -1.1
217,264 + OH686_01035 0.28 -0.2
217,264 + OH686_01035 0.28 +0.6
217,265 - OH686_01035 0.28 -0.2
217,265 - OH686_01035 0.28 +0.1
217,265 - OH686_01035 0.28 -0.9
217,282 + OH686_01035 0.37 +0.1
217,282 + OH686_01035 0.37 +0.6
217,282 + OH686_01035 0.37 +0.0
217,282 + OH686_01035 0.37 +0.1
217,282 + OH686_01035 0.37 -1.0
217,283 - OH686_01035 0.37 -0.6
217,283 - OH686_01035 0.37 +0.4
217,283 - OH686_01035 0.37 +0.3
217,455 + -0.1
217,456 - +0.9
217,456 - +0.1
217,456 - +0.1
217,456 - +0.2
217,456 - +0.6
217,544 - OH686_01040 0.18 +0.5
217,544 - OH686_01040 0.18 -0.9
217,611 + OH686_01040 0.28 -1.5
218,037 + OH686_01040 0.86 +0.9
218,037 + OH686_01040 0.86 +1.0
218,037 + OH686_01040 0.86 -0.8
218,038 - OH686_01040 0.87 +0.4
218,038 - OH686_01040 0.87 +0.2
218,038 - OH686_01040 0.87 -0.6
218,038 - OH686_01040 0.87 -0.6
218,038 - OH686_01040 0.87 -1.0

Or see this region's nucleotide sequence