Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_00650 and OH686_00655 are separated by 35 nucleotides OH686_00655 and OH686_00660 are separated by 77 nucleotides OH686_00660 and OH686_00665 are separated by 192 nucleotides
OH686_00645: OH686_00645 - Carboxymuconolactone decarboxylase , at 129,090 to 129,638
_00645
OH686_00650: OH686_00650 - Smr domain protein, at 129,635 to 130,195
_00650
OH686_00655: OH686_00655 - hypothetical protein, at 130,231 to 130,560
_00655
OH686_00660: OH686_00660 - Isochorismatase , at 130,638 to 131,231
_00660
OH686_00665: OH686_00665 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 131,424 to 132,338
_00665
Position (kb) 130
131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.681 kb on + strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.682 kb on - strand at 129.818 kb on - strand, within OH686_00650 at 129.987 kb on + strand, within OH686_00650 at 129.987 kb on + strand, within OH686_00650 at 129.988 kb on - strand, within OH686_00650 at 129.988 kb on - strand, within OH686_00650 at 129.988 kb on - strand, within OH686_00650 at 129.988 kb on - strand, within OH686_00650 at 130.223 kb on + strand at 130.224 kb on - strand at 130.578 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.675 kb on + strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.676 kb on - strand at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.795 kb on + strand, within OH686_00660 at 130.796 kb on - strand, within OH686_00660 at 130.796 kb on - strand, within OH686_00660 at 130.796 kb on - strand, within OH686_00660 at 130.796 kb on - strand, within OH686_00660 at 130.796 kb on - strand, within OH686_00660 at 130.796 kb on - strand, within OH686_00660 at 130.820 kb on + strand, within OH686_00660 at 130.820 kb on + strand, within OH686_00660 at 130.821 kb on - strand, within OH686_00660 at 131.132 kb on - strand, within OH686_00660 at 131.132 kb on - strand, within OH686_00660 at 131.132 kb on - strand, within OH686_00660 at 131.189 kb on - strand at 131.260 kb on + strand at 131.260 kb on + strand at 131.260 kb on + strand at 131.260 kb on + strand at 131.260 kb on + strand at 131.261 kb on - strand at 131.261 kb on - strand at 131.261 kb on - strand at 131.261 kb on - strand at 131.294 kb on + strand at 131.294 kb on + strand at 131.294 kb on + strand at 131.295 kb on - strand at 131.295 kb on - strand at 131.295 kb on - strand at 131.295 kb on - strand at 131.391 kb on + strand at 131.392 kb on - strand at 131.392 kb on - strand at 131.392 kb on - strand at 131.585 kb on + strand, within OH686_00665 at 131.585 kb on + strand, within OH686_00665 at 131.586 kb on - strand, within OH686_00665 at 131.586 kb on - strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.589 kb on + strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.590 kb on - strand, within OH686_00665 at 131.665 kb on + strand, within OH686_00665 at 131.665 kb on + strand, within OH686_00665 at 131.665 kb on + strand, within OH686_00665 at 131.665 kb on + strand, within OH686_00665 at 131.666 kb on - strand, within OH686_00665 at 131.676 kb on + strand, within OH686_00665 at 131.677 kb on - strand, within OH686_00665 at 131.677 kb on - strand, within OH686_00665 at 131.717 kb on - strand, within OH686_00665 at 131.857 kb on - strand, within OH686_00665 at 131.857 kb on - strand, within OH686_00665 at 131.928 kb on - strand, within OH686_00665 at 131.958 kb on + strand, within OH686_00665 at 131.959 kb on - strand, within OH686_00665 at 131.959 kb on - strand, within OH686_00665 at 131.959 kb on - strand, within OH686_00665 at 131.959 kb on - strand, within OH686_00665 at 131.959 kb on - strand, within OH686_00665 at 132.030 kb on + strand, within OH686_00665 at 132.031 kb on - strand, within OH686_00665 at 132.031 kb on - strand, within OH686_00665 at 132.031 kb on - strand, within OH686_00665 at 132.031 kb on - strand, within OH686_00665 at 132.056 kb on + strand, within OH686_00665 at 132.069 kb on + strand, within OH686_00665 at 132.069 kb on + strand, within OH686_00665 at 132.069 kb on + strand, within OH686_00665 at 132.179 kb on - strand, within OH686_00665
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 129,681 + +0.1 129,681 + -1.3 129,681 + +0.3 129,681 + -0.2 129,681 + -0.2 129,681 + +1.5 129,681 + -1.2 129,681 + +0.6 129,681 + -1.0 129,681 + +0.3 129,681 + +0.3 129,681 + -0.5 129,681 + -0.4 129,681 + -0.5 129,681 + +0.2 129,681 + +0.0 129,681 + -1.2 129,682 - -0.6 129,682 - -0.5 129,682 - -0.4 129,682 - -0.2 129,682 - -0.5 129,682 - -0.2 129,682 - +1.3 129,682 - +1.5 129,682 - -0.2 129,682 - -1.1 129,682 - -0.9 129,682 - -0.1 129,682 - -0.5 129,818 - OH686_00650 0.33 +1.2 129,987 + OH686_00650 0.63 -0.1 129,987 + OH686_00650 0.63 +0.7 129,988 - OH686_00650 0.63 -0.3 129,988 - OH686_00650 0.63 -0.4 129,988 - OH686_00650 0.63 -0.2 129,988 - OH686_00650 0.63 -0.3 130,223 + -0.1 130,224 - -0.2 130,578 + -0.4 130,587 + +0.0 130,587 + -0.8 130,587 + -0.8 130,587 + -0.6 130,675 + -2.7 130,675 + -0.3 130,675 + -0.3 130,675 + -1.9 130,675 + -0.4 130,675 + -2.3 130,675 + -1.3 130,675 + -1.1 130,675 + -1.6 130,675 + -1.9 130,675 + -0.9 130,675 + -2.1 130,675 + -1.4 130,675 + -1.2 130,675 + -3.8 130,675 + -1.0 130,675 + -1.7 130,675 + -0.8 130,675 + -1.9 130,675 + -1.2 130,675 + +0.2 130,675 + -1.8 130,675 + -3.5 130,675 + -2.9 130,675 + -0.2 130,675 + -1.3 130,675 + -0.2 130,676 - -1.5 130,676 - -1.9 130,676 - -1.9 130,676 - -2.7 130,676 - -1.3 130,676 - -3.3 130,676 - -1.4 130,676 - -1.4 130,676 - -1.4 130,676 - -2.1 130,676 - -1.1 130,676 - -0.6 130,676 - -1.4 130,676 - -1.7 130,676 - -0.9 130,676 - +0.0 130,676 - -1.3 130,676 - -0.8 130,676 - -2.5 130,795 + OH686_00660 0.26 -0.9 130,795 + OH686_00660 0.26 -2.5 130,795 + OH686_00660 0.26 -2.7 130,795 + OH686_00660 0.26 -0.3 130,795 + OH686_00660 0.26 -1.7 130,795 + OH686_00660 0.26 +0.0 130,795 + OH686_00660 0.26 -1.6 130,795 + OH686_00660 0.26 -2.0 130,795 + OH686_00660 0.26 -3.4 130,796 - OH686_00660 0.27 -1.6 130,796 - OH686_00660 0.27 -0.6 130,796 - OH686_00660 0.27 -1.4 130,796 - OH686_00660 0.27 -1.6 130,796 - OH686_00660 0.27 -1.3 130,796 - OH686_00660 0.27 -2.7 130,820 + OH686_00660 0.31 -1.9 130,820 + OH686_00660 0.31 -0.1 130,821 - OH686_00660 0.31 -1.0 131,132 - OH686_00660 0.83 -2.4 131,132 - OH686_00660 0.83 +0.0 131,132 - OH686_00660 0.83 -1.7 131,189 - -2.2 131,260 + -0.6 131,260 + -0.7 131,260 + -0.3 131,260 + +0.2 131,260 + -0.2 131,261 - +0.1 131,261 - -0.2 131,261 - -0.6 131,261 - -0.2 131,294 + +0.1 131,294 + -0.7 131,294 + -0.6 131,295 - +0.6 131,295 - -0.8 131,295 - -0.4 131,295 - -0.1 131,391 + +0.1 131,392 - +0.5 131,392 - -0.2 131,392 - -0.5 131,585 + OH686_00665 0.18 +0.1 131,585 + OH686_00665 0.18 -1.5 131,586 - OH686_00665 0.18 +1.2 131,586 - OH686_00665 0.18 -1.9 131,589 + OH686_00665 0.18 -0.1 131,589 + OH686_00665 0.18 -0.9 131,589 + OH686_00665 0.18 -1.2 131,589 + OH686_00665 0.18 -0.1 131,589 + OH686_00665 0.18 -0.8 131,589 + OH686_00665 0.18 -0.9 131,589 + OH686_00665 0.18 +1.2 131,589 + OH686_00665 0.18 -0.6 131,590 - OH686_00665 0.18 -1.0 131,590 - OH686_00665 0.18 -0.5 131,590 - OH686_00665 0.18 -0.5 131,590 - OH686_00665 0.18 +0.1 131,590 - OH686_00665 0.18 +0.3 131,590 - OH686_00665 0.18 -0.5 131,590 - OH686_00665 0.18 +0.4 131,665 + OH686_00665 0.26 -0.5 131,665 + OH686_00665 0.26 -0.5 131,665 + OH686_00665 0.26 -0.8 131,665 + OH686_00665 0.26 +0.0 131,666 - OH686_00665 0.26 -2.2 131,676 + OH686_00665 0.28 +0.2 131,677 - OH686_00665 0.28 +0.7 131,677 - OH686_00665 0.28 -0.4 131,717 - OH686_00665 0.32 -0.6 131,857 - OH686_00665 0.47 -0.2 131,857 - OH686_00665 0.47 -1.8 131,928 - OH686_00665 0.55 -0.1 131,958 + OH686_00665 0.58 +0.7 131,959 - OH686_00665 0.58 -0.6 131,959 - OH686_00665 0.58 -0.0 131,959 - OH686_00665 0.58 +0.6 131,959 - OH686_00665 0.58 -0.6 131,959 - OH686_00665 0.58 +0.2 132,030 + OH686_00665 0.66 -0.4 132,031 - OH686_00665 0.66 +0.6 132,031 - OH686_00665 0.66 -0.4 132,031 - OH686_00665 0.66 -0.4 132,031 - OH686_00665 0.66 -1.0 132,056 + OH686_00665 0.69 -1.0 132,069 + OH686_00665 0.70 -0.4 132,069 + OH686_00665 0.70 +1.0 132,069 + OH686_00665 0.70 -0.2 132,179 - OH686_00665 0.83 +0.0
Or see this region's nucleotide sequence