Strain Fitness in Pseudomonas sp. S08-1 around OH686_00140

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00135 and OH686_00140 overlap by 4 nucleotidesOH686_00140 and OH686_00145 are separated by 4 nucleotides OH686_00135: OH686_00135 - NADH oxidoreductase (quinone), F subunit, at 28,189 to 29,547 _00135 OH686_00140: OH686_00140 - NADH-ubiquinone oxidoreductase chain E , at 29,544 to 30,044 _00140 OH686_00145: OH686_00145 - NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D , at 30,049 to 31,830 _00145 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 28.655 kb on + strand, within OH686_00135at 28.656 kb on - strand, within OH686_00135at 28.656 kb on - strand, within OH686_00135at 28.656 kb on - strand, within OH686_00135at 28.679 kb on + strand, within OH686_00135at 28.680 kb on - strand, within OH686_00135at 28.808 kb on + strand, within OH686_00135at 28.808 kb on + strand, within OH686_00135at 28.809 kb on - strand, within OH686_00135at 28.849 kb on + strand, within OH686_00135at 28.849 kb on + strand, within OH686_00135at 28.850 kb on - strand, within OH686_00135at 28.980 kb on + strand, within OH686_00135at 28.980 kb on + strand, within OH686_00135at 28.980 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.983 kb on - strand, within OH686_00135at 29.108 kb on + strand, within OH686_00135at 29.108 kb on + strand, within OH686_00135at 29.109 kb on - strand, within OH686_00135at 29.123 kb on + strand, within OH686_00135at 29.127 kb on + strand, within OH686_00135at 29.127 kb on + strand, within OH686_00135at 29.127 kb on + strand, within OH686_00135at 29.128 kb on - strand, within OH686_00135at 29.128 kb on - strand, within OH686_00135at 29.551 kb on + strandat 29.552 kb on - strandat 29.552 kb on - strandat 29.596 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.819 kb on - strand, within OH686_00140at 29.819 kb on - strand, within OH686_00140at 29.819 kb on - strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.879 kb on - strand, within OH686_00140at 29.879 kb on - strand, within OH686_00140at 29.959 kb on + strand, within OH686_00140at 29.959 kb on + strand, within OH686_00140at 29.960 kb on - strand, within OH686_00140at 29.960 kb on - strand, within OH686_00140at 30.069 kb on + strandat 30.092 kb on + strandat 30.092 kb on + strandat 30.093 kb on - strandat 30.183 kb on - strandat 30.183 kb on - strandat 30.212 kb on + strandat 30.213 kb on - strandat 30.213 kb on - strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.216 kb on - strandat 30.216 kb on - strandat 30.216 kb on - strandat 30.374 kb on + strand, within OH686_00145at 30.374 kb on + strand, within OH686_00145at 30.374 kb on + strand, within OH686_00145at 30.375 kb on - strand, within OH686_00145at 30.375 kb on - strand, within OH686_00145at 30.461 kb on + strand, within OH686_00145at 30.510 kb on - strand, within OH686_00145at 30.608 kb on + strand, within OH686_00145at 30.608 kb on + strand, within OH686_00145at 30.608 kb on + strand, within OH686_00145at 30.609 kb on - strand, within OH686_00145at 30.609 kb on - strand, within OH686_00145at 30.628 kb on - strand, within OH686_00145at 30.642 kb on + strand, within OH686_00145at 30.643 kb on - strand, within OH686_00145at 30.668 kb on + strand, within OH686_00145at 30.668 kb on + strand, within OH686_00145at 30.669 kb on - strand, within OH686_00145at 30.870 kb on + strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.989 kb on + strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 31.037 kb on + strand, within OH686_00145

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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28,655 + OH686_00135 0.34 -0.6
28,656 - OH686_00135 0.34 -1.4
28,656 - OH686_00135 0.34 -0.6
28,656 - OH686_00135 0.34 -1.2
28,679 + OH686_00135 0.36 -0.8
28,680 - OH686_00135 0.36 -0.3
28,808 + OH686_00135 0.46 -0.2
28,808 + OH686_00135 0.46 -2.2
28,809 - OH686_00135 0.46 +1.0
28,849 + OH686_00135 0.49 -0.8
28,849 + OH686_00135 0.49 +0.7
28,850 - OH686_00135 0.49 +0.0
28,980 + OH686_00135 0.58 -1.3
28,980 + OH686_00135 0.58 -0.6
28,980 + OH686_00135 0.58 -0.8
28,982 + OH686_00135 0.58 -0.6
28,982 + OH686_00135 0.58 +0.0
28,982 + OH686_00135 0.58 -0.3
28,982 + OH686_00135 0.58 -0.6
28,983 - OH686_00135 0.58 +0.0
29,108 + OH686_00135 0.68 -0.6
29,108 + OH686_00135 0.68 +0.0
29,109 - OH686_00135 0.68 -1.4
29,123 + OH686_00135 0.69 -0.3
29,127 + OH686_00135 0.69 -0.4
29,127 + OH686_00135 0.69 -0.3
29,127 + OH686_00135 0.69 -1.4
29,128 - OH686_00135 0.69 -0.6
29,128 - OH686_00135 0.69 +0.0
29,551 + -0.4
29,552 - +0.8
29,552 - +0.4
29,596 + OH686_00140 0.10 -0.6
29,818 + OH686_00140 0.55 -0.2
29,818 + OH686_00140 0.55 -0.8
29,818 + OH686_00140 0.55 +0.0
29,818 + OH686_00140 0.55 -1.9
29,818 + OH686_00140 0.55 -0.6
29,818 + OH686_00140 0.55 -0.3
29,819 - OH686_00140 0.55 -0.8
29,819 - OH686_00140 0.55 -1.0
29,819 - OH686_00140 0.55 -0.3
29,878 + OH686_00140 0.67 +0.4
29,878 + OH686_00140 0.67 -0.6
29,878 + OH686_00140 0.67 -1.0
29,878 + OH686_00140 0.67 -0.6
29,879 - OH686_00140 0.67 -1.2
29,879 - OH686_00140 0.67 +0.0
29,959 + OH686_00140 0.83 +0.0
29,959 + OH686_00140 0.83 -0.2
29,960 - OH686_00140 0.83 -2.1
29,960 - OH686_00140 0.83 -0.8
30,069 + -0.3
30,092 + -0.3
30,092 + -0.8
30,093 - -0.8
30,183 - +1.0
30,183 - -2.4
30,212 + +0.4
30,213 - -0.3
30,213 - -0.3
30,215 + -1.6
30,215 + +0.0
30,215 + -0.3
30,215 + +0.0
30,215 + -0.3
30,216 - +0.0
30,216 - -1.0
30,216 - +0.0
30,374 + OH686_00145 0.18 -0.3
30,374 + OH686_00145 0.18 -0.3
30,374 + OH686_00145 0.18 -0.8
30,375 - OH686_00145 0.18 +0.0
30,375 - OH686_00145 0.18 +0.0
30,461 + OH686_00145 0.23 -0.3
30,510 - OH686_00145 0.26 -1.2
30,608 + OH686_00145 0.31 +0.0
30,608 + OH686_00145 0.31 -2.6
30,608 + OH686_00145 0.31 -1.7
30,609 - OH686_00145 0.31 -0.3
30,609 - OH686_00145 0.31 -0.3
30,628 - OH686_00145 0.32 -0.3
30,642 + OH686_00145 0.33 +0.0
30,643 - OH686_00145 0.33 -0.3
30,668 + OH686_00145 0.35 -0.3
30,668 + OH686_00145 0.35 +0.0
30,669 - OH686_00145 0.35 -0.6
30,870 + OH686_00145 0.46 -1.0
30,871 - OH686_00145 0.46 -0.3
30,871 - OH686_00145 0.46 +0.1
30,871 - OH686_00145 0.46 +0.0
30,871 - OH686_00145 0.46 -1.8
30,872 + OH686_00145 0.46 -1.0
30,872 + OH686_00145 0.46 +0.0
30,872 + OH686_00145 0.46 -0.2
30,872 + OH686_00145 0.46 -0.6
30,872 + OH686_00145 0.46 -0.3
30,872 + OH686_00145 0.46 -0.8
30,872 + OH686_00145 0.46 +0.0
30,872 + OH686_00145 0.46 -0.6
30,872 + OH686_00145 0.46 -1.3
30,872 + OH686_00145 0.46 -0.6
30,872 + OH686_00145 0.46 -1.8
30,872 + OH686_00145 0.46 -0.6
30,872 + OH686_00145 0.46 +0.0
30,873 - OH686_00145 0.46 -0.6
30,873 - OH686_00145 0.46 -0.6
30,873 - OH686_00145 0.46 -1.0
30,873 - OH686_00145 0.46 -0.3
30,873 - OH686_00145 0.46 -1.8
30,873 - OH686_00145 0.46 -0.6
30,873 - OH686_00145 0.46 +0.7
30,873 - OH686_00145 0.46 -1.3
30,873 - OH686_00145 0.46 -0.8
30,873 - OH686_00145 0.46 -0.6
30,873 - OH686_00145 0.46 +0.0
30,873 - OH686_00145 0.46 -2.1
30,873 - OH686_00145 0.46 -0.8
30,989 + OH686_00145 0.53 -1.3
30,990 - OH686_00145 0.53 -0.3
30,990 - OH686_00145 0.53 -1.3
30,990 - OH686_00145 0.53 -1.0
30,990 - OH686_00145 0.53 +0.0
31,037 + OH686_00145 0.55 -1.3

Or see this region's nucleotide sequence