Strain Fitness in Pseudomonas sp. S08-1 around OH686_00105

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00100 and OH686_00105 are separated by 13 nucleotidesOH686_00105 and OH686_00110 overlap by 4 nucleotidesOH686_00110 and OH686_00115 overlap by 4 nucleotidesOH686_00115 and OH686_00120 are separated by 10 nucleotides OH686_00100: OH686_00100 - NADH-ubiquinone oxidoreductase chain M , at 19,628 to 21,157 _00100 OH686_00105: OH686_00105 - NADH-ubiquinone oxidoreductase chain L , at 21,171 to 23,021 _00105 OH686_00110: OH686_00110 - NADH-ubiquinone oxidoreductase chain K , at 23,018 to 23,326 _00110 OH686_00115: OH686_00115 - NADH-ubiquinone oxidoreductase chain J , at 23,323 to 23,832 _00115 OH686_00120: OH686_00120 - NADH-ubiquinone oxidoreductase chain I , at 23,843 to 24,391 _00120 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 20.205 kb on + strand, within OH686_00100at 20.205 kb on + strand, within OH686_00100at 20.206 kb on - strand, within OH686_00100at 20.493 kb on + strand, within OH686_00100at 20.535 kb on + strand, within OH686_00100at 20.535 kb on + strand, within OH686_00100at 20.536 kb on - strand, within OH686_00100at 20.536 kb on - strand, within OH686_00100at 20.565 kb on + strand, within OH686_00100at 20.565 kb on + strand, within OH686_00100at 20.565 kb on + strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.703 kb on + strand, within OH686_00100at 20.703 kb on + strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 21.140 kb on + strandat 21.173 kb on - strandat 21.199 kb on - strandat 21.233 kb on - strandat 21.355 kb on + strandat 21.355 kb on + strandat 21.380 kb on - strand, within OH686_00105at 21.380 kb on - strand, within OH686_00105at 21.380 kb on - strand, within OH686_00105at 21.733 kb on + strand, within OH686_00105at 21.734 kb on - strand, within OH686_00105at 21.734 kb on - strand, within OH686_00105at 21.769 kb on + strand, within OH686_00105at 21.769 kb on + strand, within OH686_00105at 21.770 kb on - strand, within OH686_00105at 21.826 kb on + strand, within OH686_00105at 22.063 kb on + strand, within OH686_00105at 22.064 kb on - strand, within OH686_00105at 22.087 kb on + strand, within OH686_00105at 22.087 kb on + strand, within OH686_00105at 22.088 kb on - strand, within OH686_00105at 22.116 kb on + strand, within OH686_00105at 22.116 kb on + strand, within OH686_00105at 22.225 kb on + strand, within OH686_00105at 22.225 kb on + strand, within OH686_00105at 22.225 kb on + strand, within OH686_00105at 22.226 kb on - strand, within OH686_00105at 22.379 kb on + strand, within OH686_00105at 22.380 kb on - strand, within OH686_00105at 22.380 kb on - strand, within OH686_00105at 22.393 kb on + strand, within OH686_00105at 22.393 kb on + strand, within OH686_00105at 22.393 kb on + strand, within OH686_00105at 22.393 kb on + strand, within OH686_00105at 22.394 kb on - strand, within OH686_00105at 22.394 kb on - strand, within OH686_00105at 22.394 kb on - strand, within OH686_00105at 22.543 kb on + strand, within OH686_00105at 22.543 kb on + strand, within OH686_00105at 22.543 kb on + strand, within OH686_00105at 22.543 kb on + strand, within OH686_00105at 22.543 kb on + strand, within OH686_00105at 22.544 kb on - strand, within OH686_00105at 22.544 kb on - strand, within OH686_00105at 22.546 kb on + strand, within OH686_00105at 22.547 kb on - strand, within OH686_00105at 22.547 kb on - strand, within OH686_00105at 22.547 kb on - strand, within OH686_00105at 22.547 kb on - strand, within OH686_00105at 22.564 kb on + strand, within OH686_00105at 22.564 kb on + strand, within OH686_00105at 22.630 kb on - strand, within OH686_00105at 22.678 kb on + strand, within OH686_00105at 22.699 kb on + strand, within OH686_00105at 22.699 kb on + strand, within OH686_00105at 22.700 kb on - strand, within OH686_00105at 22.837 kb on + strandat 22.837 kb on + strandat 23.010 kb on + strandat 23.010 kb on + strandat 23.010 kb on + strandat 23.011 kb on - strandat 23.011 kb on - strandat 23.159 kb on + strand, within OH686_00110at 23.326 kb on + strandat 23.326 kb on + strandat 23.327 kb on - strandat 23.327 kb on - strandat 23.410 kb on + strand, within OH686_00115at 23.420 kb on + strand, within OH686_00115at 23.421 kb on - strand, within OH686_00115at 23.421 kb on - strand, within OH686_00115at 23.508 kb on - strand, within OH686_00115at 23.658 kb on - strand, within OH686_00115at 23.787 kb on + strandat 23.787 kb on + strandat 23.787 kb on + strandat 23.787 kb on + strandat 23.788 kb on - strandat 23.788 kb on - strandat 23.788 kb on - strandat 23.788 kb on - strandat 23.816 kb on + strandat 23.817 kb on - strandat 23.817 kb on - strandat 23.844 kb on + strandat 23.934 kb on + strand, within OH686_00120at 23.935 kb on - strand, within OH686_00120at 23.935 kb on - strand, within OH686_00120at 23.944 kb on - strand, within OH686_00120at 23.944 kb on - strand, within OH686_00120at 23.991 kb on + strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 24.012 kb on + strand, within OH686_00120at 24.012 kb on + strand, within OH686_00120at 24.013 kb on - strand, within OH686_00120

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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20,205 + OH686_00100 0.38 -0.3
20,205 + OH686_00100 0.38 +0.0
20,206 - OH686_00100 0.38 +0.0
20,493 + OH686_00100 0.57 -1.3
20,535 + OH686_00100 0.59 -0.6
20,535 + OH686_00100 0.59 -0.6
20,536 - OH686_00100 0.59 -1.4
20,536 - OH686_00100 0.59 +0.1
20,565 + OH686_00100 0.61 +2.0
20,565 + OH686_00100 0.61 +0.6
20,565 + OH686_00100 0.61 +0.2
20,566 - OH686_00100 0.61 -1.4
20,566 - OH686_00100 0.61 -1.0
20,566 - OH686_00100 0.61 -0.3
20,566 - OH686_00100 0.61 +0.4
20,566 - OH686_00100 0.61 -0.6
20,566 - OH686_00100 0.61 +0.0
20,566 - OH686_00100 0.61 -1.2
20,566 - OH686_00100 0.61 +0.0
20,566 - OH686_00100 0.61 -0.8
20,566 - OH686_00100 0.61 -0.3
20,566 - OH686_00100 0.61 -0.8
20,566 - OH686_00100 0.61 -1.0
20,703 + OH686_00100 0.70 -1.0
20,703 + OH686_00100 0.70 -0.6
20,704 - OH686_00100 0.70 +0.0
20,704 - OH686_00100 0.70 -1.3
20,704 - OH686_00100 0.70 -2.5
20,704 - OH686_00100 0.70 -0.3
20,704 - OH686_00100 0.70 -0.3
20,704 - OH686_00100 0.70 -0.3
20,704 - OH686_00100 0.70 -1.0
20,704 - OH686_00100 0.70 -0.3
20,704 - OH686_00100 0.70 +0.0
21,140 + -0.8
21,173 - -0.6
21,199 - +0.0
21,233 - -1.0
21,355 + -0.6
21,355 + -1.0
21,380 - OH686_00105 0.11 +0.0
21,380 - OH686_00105 0.11 -0.3
21,380 - OH686_00105 0.11 +0.2
21,733 + OH686_00105 0.30 -1.3
21,734 - OH686_00105 0.30 -0.2
21,734 - OH686_00105 0.30 -0.8
21,769 + OH686_00105 0.32 +0.6
21,769 + OH686_00105 0.32 +0.4
21,770 - OH686_00105 0.32 -0.6
21,826 + OH686_00105 0.35 +0.0
22,063 + OH686_00105 0.48 -0.6
22,064 - OH686_00105 0.48 -1.8
22,087 + OH686_00105 0.49 -1.9
22,087 + OH686_00105 0.49 -0.6
22,088 - OH686_00105 0.50 -1.0
22,116 + OH686_00105 0.51 -0.3
22,116 + OH686_00105 0.51 -0.6
22,225 + OH686_00105 0.57 +1.0
22,225 + OH686_00105 0.57 +1.6
22,225 + OH686_00105 0.57 -0.3
22,226 - OH686_00105 0.57 +1.0
22,379 + OH686_00105 0.65 -0.7
22,380 - OH686_00105 0.65 -1.2
22,380 - OH686_00105 0.65 -0.3
22,393 + OH686_00105 0.66 -0.3
22,393 + OH686_00105 0.66 -0.6
22,393 + OH686_00105 0.66 +0.0
22,393 + OH686_00105 0.66 -0.4
22,394 - OH686_00105 0.66 -0.6
22,394 - OH686_00105 0.66 -1.3
22,394 - OH686_00105 0.66 +0.0
22,543 + OH686_00105 0.74 +0.0
22,543 + OH686_00105 0.74 -0.3
22,543 + OH686_00105 0.74 +0.0
22,543 + OH686_00105 0.74 -1.0
22,543 + OH686_00105 0.74 -0.3
22,544 - OH686_00105 0.74 +0.4
22,544 - OH686_00105 0.74 -0.2
22,546 + OH686_00105 0.74 -0.3
22,547 - OH686_00105 0.74 -0.8
22,547 - OH686_00105 0.74 -0.3
22,547 - OH686_00105 0.74 +1.0
22,547 - OH686_00105 0.74 -0.6
22,564 + OH686_00105 0.75 +0.0
22,564 + OH686_00105 0.75 -0.3
22,630 - OH686_00105 0.79 -1.0
22,678 + OH686_00105 0.81 -0.8
22,699 + OH686_00105 0.83 +0.0
22,699 + OH686_00105 0.83 -1.2
22,700 - OH686_00105 0.83 -0.2
22,837 + -1.6
22,837 + -1.8
23,010 + -1.3
23,010 + -0.6
23,010 + -0.3
23,011 - -0.3
23,011 - -1.6
23,159 + OH686_00110 0.46 -0.8
23,326 + -0.2
23,326 + -0.8
23,327 - +0.7
23,327 - -0.3
23,410 + OH686_00115 0.17 -0.6
23,420 + OH686_00115 0.19 +0.0
23,421 - OH686_00115 0.19 -1.4
23,421 - OH686_00115 0.19 -1.0
23,508 - OH686_00115 0.36 -0.6
23,658 - OH686_00115 0.66 -0.6
23,787 + -0.3
23,787 + +0.0
23,787 + -0.6
23,787 + -0.3
23,788 - -0.8
23,788 - +0.0
23,788 - -0.3
23,788 - +0.7
23,816 + -0.8
23,817 - +0.3
23,817 - -0.3
23,844 + +0.7
23,934 + OH686_00120 0.17 -0.6
23,935 - OH686_00120 0.17 -0.6
23,935 - OH686_00120 0.17 -1.0
23,944 - OH686_00120 0.18 -0.3
23,944 - OH686_00120 0.18 -1.3
23,991 + OH686_00120 0.27 -0.3
23,992 - OH686_00120 0.27 -1.4
23,992 - OH686_00120 0.27 -0.7
23,992 - OH686_00120 0.27 -0.8
23,992 - OH686_00120 0.27 +1.0
24,012 + OH686_00120 0.31 -1.6
24,012 + OH686_00120 0.31 -0.3
24,013 - OH686_00120 0.31 -0.6

Or see this region's nucleotide sequence