Strain Fitness in Pseudomonas simiae WCS417 around PS417_04595

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04590 and PS417_04595 are separated by 804 nucleotidesPS417_04595 and PS417_04600 overlap by 4 nucleotidesPS417_04600 and PS417_04605 overlap by 4 nucleotides PS417_04590: PS417_04590 - methyltransferase, at 1,016,127 to 1,016,999 _04590 PS417_04595: PS417_04595 - cell division protein MraZ, at 1,017,804 to 1,018,259 _04595 PS417_04600: PS417_04600 - 16S rRNA methyltransferase, at 1,018,256 to 1,019,203 _04600 PS417_04605: PS417_04605 - cell division protein FtsL, at 1,019,200 to 1,019,493 _04605 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -2 -1 0 1at 1016.876 kb on + strand, within PS417_04590at 1016.877 kb on - strand, within PS417_04590at 1016.887 kb on + strand, within PS417_04590at 1016.887 kb on + strand, within PS417_04590at 1016.888 kb on - strand, within PS417_04590at 1016.964 kb on + strandat 1016.964 kb on + strandat 1016.997 kb on + strandat 1016.998 kb on - strandat 1017.018 kb on - strandat 1017.053 kb on - strandat 1017.055 kb on + strandat 1017.055 kb on + strandat 1017.056 kb on - strandat 1017.056 kb on - strandat 1017.487 kb on + strandat 1017.490 kb on + strandat 1017.491 kb on - strandat 1017.599 kb on + strandat 1017.724 kb on + strandat 1017.724 kb on + strandat 1017.937 kb on + strand, within PS417_04595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,016,876 + PS417_04590 0.86 -1.5
1,016,877 - PS417_04590 0.86 -0.2
1,016,887 + PS417_04590 0.87 -0.7
1,016,887 + PS417_04590 0.87 -0.1
1,016,888 - PS417_04590 0.87 -1.8
1,016,964 + -0.4
1,016,964 + -0.3
1,016,997 + -0.9
1,016,998 - -0.4
1,017,018 - +0.2
1,017,053 - -0.6
1,017,055 + +0.6
1,017,055 + +0.0
1,017,056 - -0.0
1,017,056 - +0.5
1,017,487 + +0.3
1,017,490 + -0.3
1,017,491 - -0.0
1,017,599 + +0.9
1,017,724 + -2.2
1,017,724 + -1.5
1,017,937 + PS417_04595 0.29 -2.5

Or see this region's nucleotide sequence