Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28125 and PS417_28130 are separated by 182 nucleotides PS417_28130 and PS417_28135 are separated by 392 nucleotides
PS417_28125: PS417_28125 - LysR family transcriptional regulator, at 6,068,742 to 6,069,650
_28125
PS417_28130: PS417_28130 - aspartate ammonia-lyase, at 6,069,833 to 6,071,257
_28130
PS417_28135: PS417_28135 - sodium:alanine symporter, at 6,071,650 to 6,073,095
_28135
Position (kb)
6069
6070
6071
6072 Strain fitness (log2 ratio)
-1
0
1 at 6070.226 kb on + strand, within PS417_28130 at 6070.671 kb on + strand, within PS417_28130 at 6071.255 kb on + strand at 6071.469 kb on + strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.472 kb on - strand at 6071.472 kb on - strand at 6071.539 kb on + strand at 6071.688 kb on - strand at 6071.781 kb on + strand at 6071.986 kb on + strand, within PS417_28135 at 6072.013 kb on + strand, within PS417_28135 at 6072.013 kb on + strand, within PS417_28135 at 6072.031 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.035 kb on - strand, within PS417_28135 at 6072.035 kb on - strand, within PS417_28135 at 6072.178 kb on + strand, within PS417_28135 at 6072.179 kb on - strand, within PS417_28135 at 6072.179 kb on - strand, within PS417_28135
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 6,070,226 + PS417_28130 0.28 +0.4 6,070,671 + PS417_28130 0.59 +0.4 6,071,255 + -0.0 6,071,469 + -0.2 6,071,470 - -0.4 6,071,470 - -0.7 6,071,470 - -0.3 6,071,470 - -0.2 6,071,470 - +0.0 6,071,472 - -0.2 6,071,472 - -0.8 6,071,539 + -0.1 6,071,688 - -1.6 6,071,781 + -0.4 6,071,986 + PS417_28135 0.23 -0.4 6,072,013 + PS417_28135 0.25 -1.0 6,072,013 + PS417_28135 0.25 -0.6 6,072,031 + PS417_28135 0.26 -0.2 6,072,034 + PS417_28135 0.27 +0.4 6,072,034 + PS417_28135 0.27 +0.2 6,072,034 + PS417_28135 0.27 -1.4 6,072,034 + PS417_28135 0.27 +0.5 6,072,035 - PS417_28135 0.27 -0.4 6,072,035 - PS417_28135 0.27 -0.0 6,072,178 + PS417_28135 0.37 -0.8 6,072,179 - PS417_28135 0.37 -0.4 6,072,179 - PS417_28135 0.37 -0.2
Or see this region's nucleotide sequence