Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25220 and PS417_25225 overlap by 4 nucleotides PS417_25225 and PS417_25230 overlap by 4 nucleotides PS417_25230 and PS417_25235 are separated by 150 nucleotides PS417_25235 and PS417_25240 are separated by 66 nucleotides
PS417_25220: PS417_25220 - iron-hydroxamate ABC transporter substrate-binding protein, at 5,466,646 to 5,467,434
_25220
PS417_25225: PS417_25225 - MFS transporter, at 5,467,431 to 5,467,850
_25225
PS417_25230: PS417_25230 - GTP cyclohydrolase, at 5,467,847 to 5,468,464
_25230
PS417_25235: PS417_25235 - ABC transporter substrate-binding protein, at 5,468,615 to 5,469,334
_25235
PS417_25240: PS417_25240 - thiamine monophosphate kinase, at 5,469,401 to 5,470,366
_25240
Position (kb) 5467
5468
5469 Strain fitness (log2 ratio) -2
-1
0
1 at 5466.933 kb on + strand, within PS417_25220 at 5466.936 kb on - strand, within PS417_25220 at 5466.936 kb on - strand, within PS417_25220 at 5466.953 kb on - strand, within PS417_25220 at 5467.107 kb on + strand, within PS417_25220 at 5467.213 kb on + strand, within PS417_25220 at 5467.438 kb on - strand at 5467.462 kb on + strand at 5467.462 kb on + strand at 5467.463 kb on - strand at 5467.463 kb on - strand at 5467.658 kb on + strand, within PS417_25225 at 5467.658 kb on + strand, within PS417_25225 at 5467.802 kb on - strand, within PS417_25225 at 5468.505 kb on + strand at 5468.506 kb on - strand at 5468.548 kb on + strand at 5468.587 kb on - strand at 5468.587 kb on - strand at 5468.591 kb on - strand at 5468.616 kb on + strand at 5468.616 kb on + strand at 5468.617 kb on - strand at 5468.617 kb on - strand at 5468.617 kb on - strand at 5468.700 kb on - strand at 5468.700 kb on - strand, within PS417_25235 at 5468.745 kb on + strand, within PS417_25235 at 5468.745 kb on + strand, within PS417_25235 at 5468.745 kb on + strand, within PS417_25235 at 5468.745 kb on + strand, within PS417_25235 at 5468.745 kb on + strand, within PS417_25235 at 5468.746 kb on - strand, within PS417_25235 at 5468.811 kb on + strand, within PS417_25235 at 5468.812 kb on - strand, within PS417_25235 at 5468.812 kb on - strand, within PS417_25235 at 5468.838 kb on + strand, within PS417_25235 at 5468.839 kb on - strand, within PS417_25235 at 5468.839 kb on - strand, within PS417_25235 at 5468.923 kb on - strand, within PS417_25235 at 5468.932 kb on - strand, within PS417_25235 at 5468.962 kb on - strand, within PS417_25235 at 5468.975 kb on - strand, within PS417_25235 at 5469.015 kb on + strand, within PS417_25235 at 5469.016 kb on - strand, within PS417_25235 at 5469.016 kb on - strand, within PS417_25235 at 5469.016 kb on - strand, within PS417_25235 at 5469.016 kb on - strand, within PS417_25235 at 5469.133 kb on - strand, within PS417_25235 at 5469.188 kb on + strand, within PS417_25235 at 5469.188 kb on + strand, within PS417_25235 at 5469.189 kb on - strand, within PS417_25235 at 5469.225 kb on + strand, within PS417_25235 at 5469.348 kb on + strand at 5469.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 5,466,933 + PS417_25220 0.36 +0.2 5,466,936 - PS417_25220 0.37 +0.3 5,466,936 - PS417_25220 0.37 -0.9 5,466,953 - PS417_25220 0.39 +0.1 5,467,107 + PS417_25220 0.58 -0.2 5,467,213 + PS417_25220 0.72 +0.6 5,467,438 - -0.1 5,467,462 + +0.7 5,467,462 + +0.1 5,467,463 - -0.7 5,467,463 - -0.1 5,467,658 + PS417_25225 0.54 +0.6 5,467,658 + PS417_25225 0.54 -0.5 5,467,802 - PS417_25225 0.88 -0.2 5,468,505 + -0.9 5,468,506 - -0.1 5,468,548 + -0.8 5,468,587 - +0.6 5,468,587 - -0.5 5,468,591 - -1.9 5,468,616 + +1.0 5,468,616 + +0.2 5,468,617 - +0.8 5,468,617 - +0.5 5,468,617 - -0.2 5,468,700 - +0.0 5,468,700 - PS417_25235 0.12 +0.1 5,468,745 + PS417_25235 0.18 -0.4 5,468,745 + PS417_25235 0.18 +0.1 5,468,745 + PS417_25235 0.18 -0.0 5,468,745 + PS417_25235 0.18 +0.5 5,468,745 + PS417_25235 0.18 +0.0 5,468,746 - PS417_25235 0.18 -0.3 5,468,811 + PS417_25235 0.27 -0.2 5,468,812 - PS417_25235 0.27 +0.2 5,468,812 - PS417_25235 0.27 -1.0 5,468,838 + PS417_25235 0.31 +0.3 5,468,839 - PS417_25235 0.31 +0.0 5,468,839 - PS417_25235 0.31 +0.0 5,468,923 - PS417_25235 0.43 -0.5 5,468,932 - PS417_25235 0.44 -0.0 5,468,962 - PS417_25235 0.48 +1.2 5,468,975 - PS417_25235 0.50 +0.2 5,469,015 + PS417_25235 0.56 -0.1 5,469,016 - PS417_25235 0.56 -0.6 5,469,016 - PS417_25235 0.56 +0.7 5,469,016 - PS417_25235 0.56 +0.3 5,469,016 - PS417_25235 0.56 -0.0 5,469,133 - PS417_25235 0.72 -0.3 5,469,188 + PS417_25235 0.80 +0.1 5,469,188 + PS417_25235 0.80 -0.5 5,469,189 - PS417_25235 0.80 +0.1 5,469,225 + PS417_25235 0.85 -0.1 5,469,348 + -0.1 5,469,349 - -1.0
Or see this region's nucleotide sequence