Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4516

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4515 and Echvi_4516 are separated by 65 nucleotidesEchvi_4516 and Echvi_4517 are separated by 5 nucleotides Echvi_4515: Echvi_4515 - transporter, SSS family, at 5,393,117 to 5,394,619 _4515 Echvi_4516: Echvi_4516 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 5,394,685 to 5,395,614 _4516 Echvi_4517: Echvi_4517 - Periplasmic component of the Tol biopolymer transport system, at 5,395,620 to 5,397,107 _4517 Position (kb) 5394 5395 5396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5393.728 kb on - strand, within Echvi_4515at 5393.790 kb on + strand, within Echvi_4515at 5393.790 kb on + strand, within Echvi_4515at 5393.846 kb on + strand, within Echvi_4515at 5393.862 kb on + strand, within Echvi_4515at 5393.901 kb on - strand, within Echvi_4515at 5393.907 kb on + strand, within Echvi_4515at 5393.908 kb on - strand, within Echvi_4515at 5393.971 kb on + strand, within Echvi_4515at 5393.972 kb on - strand, within Echvi_4515at 5393.972 kb on - strand, within Echvi_4515at 5393.973 kb on - strand, within Echvi_4515at 5394.065 kb on + strand, within Echvi_4515at 5394.066 kb on - strand, within Echvi_4515at 5394.068 kb on + strand, within Echvi_4515at 5394.069 kb on - strand, within Echvi_4515at 5394.069 kb on - strand, within Echvi_4515at 5394.093 kb on - strand, within Echvi_4515at 5394.104 kb on + strand, within Echvi_4515at 5394.104 kb on + strand, within Echvi_4515at 5394.104 kb on + strand, within Echvi_4515at 5394.105 kb on - strand, within Echvi_4515at 5394.105 kb on - strand, within Echvi_4515at 5394.123 kb on + strand, within Echvi_4515at 5394.124 kb on - strand, within Echvi_4515at 5394.127 kb on + strand, within Echvi_4515at 5394.128 kb on - strand, within Echvi_4515at 5394.155 kb on + strand, within Echvi_4515at 5394.164 kb on + strand, within Echvi_4515at 5394.195 kb on - strand, within Echvi_4515at 5394.226 kb on + strand, within Echvi_4515at 5394.227 kb on - strand, within Echvi_4515at 5394.227 kb on - strand, within Echvi_4515at 5394.238 kb on + strand, within Echvi_4515at 5394.253 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.301 kb on - strand, within Echvi_4515at 5394.301 kb on - strand, within Echvi_4515at 5394.301 kb on - strand, within Echvi_4515at 5394.369 kb on - strand, within Echvi_4515at 5394.369 kb on - strand, within Echvi_4515at 5394.377 kb on - strand, within Echvi_4515at 5394.389 kb on + strand, within Echvi_4515at 5394.390 kb on - strand, within Echvi_4515at 5394.415 kb on - strand, within Echvi_4515at 5394.514 kb on + strandat 5394.514 kb on + strandat 5394.514 kb on + strandat 5394.515 kb on - strandat 5394.515 kb on - strandat 5394.523 kb on + strandat 5394.523 kb on + strandat 5394.523 kb on + strandat 5394.524 kb on - strandat 5394.524 kb on - strandat 5394.577 kb on + strandat 5394.578 kb on - strandat 5394.579 kb on + strandat 5394.579 kb on + strandat 5394.580 kb on - strandat 5394.580 kb on - strandat 5394.607 kb on + strandat 5394.608 kb on - strandat 5394.621 kb on + strandat 5394.621 kb on + strandat 5394.621 kb on + strandat 5394.622 kb on - strandat 5394.707 kb on - strandat 5394.712 kb on - strandat 5394.823 kb on + strand, within Echvi_4516at 5394.839 kb on + strand, within Echvi_4516at 5394.839 kb on + strand, within Echvi_4516at 5394.933 kb on - strand, within Echvi_4516at 5394.944 kb on + strand, within Echvi_4516at 5394.944 kb on + strand, within Echvi_4516at 5394.986 kb on + strand, within Echvi_4516at 5394.998 kb on - strand, within Echvi_4516at 5395.064 kb on + strand, within Echvi_4516at 5395.073 kb on - strand, within Echvi_4516at 5395.111 kb on - strand, within Echvi_4516at 5395.176 kb on + strand, within Echvi_4516at 5395.177 kb on - strand, within Echvi_4516at 5395.188 kb on + strand, within Echvi_4516at 5395.189 kb on - strand, within Echvi_4516at 5395.189 kb on - strand, within Echvi_4516at 5395.193 kb on + strand, within Echvi_4516at 5395.193 kb on + strand, within Echvi_4516at 5395.215 kb on + strand, within Echvi_4516at 5395.216 kb on - strand, within Echvi_4516at 5395.216 kb on - strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.219 kb on - strand, within Echvi_4516at 5395.219 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.275 kb on - strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.299 kb on - strand, within Echvi_4516at 5395.299 kb on - strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.336 kb on - strand, within Echvi_4516at 5395.336 kb on - strand, within Echvi_4516at 5395.367 kb on - strand, within Echvi_4516at 5395.411 kb on + strand, within Echvi_4516at 5395.413 kb on + strand, within Echvi_4516at 5395.413 kb on + strand, within Echvi_4516at 5395.414 kb on - strand, within Echvi_4516at 5395.414 kb on - strand, within Echvi_4516at 5395.432 kb on + strand, within Echvi_4516at 5395.432 kb on + strand, within Echvi_4516at 5395.531 kb on - strandat 5395.554 kb on + strandat 5395.554 kb on + strandat 5395.555 kb on - strandat 5395.555 kb on - strandat 5395.714 kb on + strandat 5395.733 kb on + strandat 5395.733 kb on + strandat 5395.733 kb on + strandat 5395.733 kb on + strandat 5395.734 kb on - strandat 5395.784 kb on + strand, within Echvi_4517at 5395.784 kb on + strand, within Echvi_4517at 5395.846 kb on + strand, within Echvi_4517at 5395.859 kb on + strand, within Echvi_4517at 5395.859 kb on + strand, within Echvi_4517at 5395.932 kb on + strand, within Echvi_4517at 5395.933 kb on - strand, within Echvi_4517at 5395.937 kb on + strand, within Echvi_4517at 5395.939 kb on + strand, within Echvi_4517at 5396.154 kb on + strand, within Echvi_4517at 5396.170 kb on - strand, within Echvi_4517at 5396.201 kb on + strand, within Echvi_4517at 5396.215 kb on + strand, within Echvi_4517at 5396.228 kb on - strand, within Echvi_4517at 5396.232 kb on - strand, within Echvi_4517at 5396.299 kb on - strand, within Echvi_4517at 5396.394 kb on + strand, within Echvi_4517at 5396.394 kb on + strand, within Echvi_4517at 5396.396 kb on + strand, within Echvi_4517at 5396.396 kb on + strand, within Echvi_4517at 5396.397 kb on - strand, within Echvi_4517at 5396.436 kb on - strand, within Echvi_4517at 5396.436 kb on - strand, within Echvi_4517at 5396.436 kb on - strand, within Echvi_4517at 5396.445 kb on + strand, within Echvi_4517at 5396.445 kb on + strand, within Echvi_4517at 5396.489 kb on + strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.491 kb on + strand, within Echvi_4517at 5396.495 kb on + strand, within Echvi_4517at 5396.565 kb on - strand, within Echvi_4517

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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5,393,728 - Echvi_4515 0.41 -1.2
5,393,790 + Echvi_4515 0.45 +0.5
5,393,790 + Echvi_4515 0.45 +0.7
5,393,846 + Echvi_4515 0.49 +0.6
5,393,862 + Echvi_4515 0.50 -0.8
5,393,901 - Echvi_4515 0.52 -0.7
5,393,907 + Echvi_4515 0.53 -0.0
5,393,908 - Echvi_4515 0.53 +1.7
5,393,971 + Echvi_4515 0.57 -0.7
5,393,972 - Echvi_4515 0.57 +0.1
5,393,972 - Echvi_4515 0.57 -0.3
5,393,973 - Echvi_4515 0.57 +0.7
5,394,065 + Echvi_4515 0.63 +0.6
5,394,066 - Echvi_4515 0.63 +0.4
5,394,068 + Echvi_4515 0.63 +0.2
5,394,069 - Echvi_4515 0.63 +0.5
5,394,069 - Echvi_4515 0.63 -0.4
5,394,093 - Echvi_4515 0.65 +3.2
5,394,104 + Echvi_4515 0.66 +1.7
5,394,104 + Echvi_4515 0.66 +0.9
5,394,104 + Echvi_4515 0.66 +1.0
5,394,105 - Echvi_4515 0.66 +0.3
5,394,105 - Echvi_4515 0.66 -1.1
5,394,123 + Echvi_4515 0.67 -0.4
5,394,124 - Echvi_4515 0.67 +0.6
5,394,127 + Echvi_4515 0.67 +0.5
5,394,128 - Echvi_4515 0.67 +0.2
5,394,155 + Echvi_4515 0.69 -0.5
5,394,164 + Echvi_4515 0.70 -0.4
5,394,195 - Echvi_4515 0.72 -0.5
5,394,226 + Echvi_4515 0.74 -1.3
5,394,227 - Echvi_4515 0.74 +1.8
5,394,227 - Echvi_4515 0.74 -0.3
5,394,238 + Echvi_4515 0.75 -0.4
5,394,253 + Echvi_4515 0.76 +0.7
5,394,261 + Echvi_4515 0.76 +0.5
5,394,261 + Echvi_4515 0.76 -1.1
5,394,261 + Echvi_4515 0.76 -0.3
5,394,261 + Echvi_4515 0.76 -2.0
5,394,262 - Echvi_4515 0.76 +0.5
5,394,262 - Echvi_4515 0.76 -0.0
5,394,262 - Echvi_4515 0.76 -0.4
5,394,262 - Echvi_4515 0.76 +0.4
5,394,301 - Echvi_4515 0.79 +1.4
5,394,301 - Echvi_4515 0.79 +0.8
5,394,301 - Echvi_4515 0.79 -1.0
5,394,369 - Echvi_4515 0.83 -1.5
5,394,369 - Echvi_4515 0.83 -0.2
5,394,377 - Echvi_4515 0.84 -0.7
5,394,389 + Echvi_4515 0.85 -0.6
5,394,390 - Echvi_4515 0.85 +0.4
5,394,415 - Echvi_4515 0.86 -0.9
5,394,514 + +1.1
5,394,514 + -0.5
5,394,514 + -0.4
5,394,515 - +1.0
5,394,515 - +0.8
5,394,523 + +1.1
5,394,523 + -0.1
5,394,523 + +0.6
5,394,524 - -0.7
5,394,524 - +1.0
5,394,577 + +0.2
5,394,578 - +0.4
5,394,579 + -0.2
5,394,579 + +0.7
5,394,580 - +0.7
5,394,580 - -1.1
5,394,607 + -0.3
5,394,608 - -0.3
5,394,621 + -0.3
5,394,621 + +2.8
5,394,621 + +1.3
5,394,622 - +0.1
5,394,707 - +0.3
5,394,712 - -0.7
5,394,823 + Echvi_4516 0.15 -0.4
5,394,839 + Echvi_4516 0.17 +0.1
5,394,839 + Echvi_4516 0.17 -0.2
5,394,933 - Echvi_4516 0.27 +1.1
5,394,944 + Echvi_4516 0.28 +0.5
5,394,944 + Echvi_4516 0.28 +0.6
5,394,986 + Echvi_4516 0.32 +0.2
5,394,998 - Echvi_4516 0.34 -1.4
5,395,064 + Echvi_4516 0.41 -1.6
5,395,073 - Echvi_4516 0.42 -0.6
5,395,111 - Echvi_4516 0.46 -0.3
5,395,176 + Echvi_4516 0.53 -0.5
5,395,177 - Echvi_4516 0.53 -2.0
5,395,188 + Echvi_4516 0.54 -0.7
5,395,189 - Echvi_4516 0.54 -0.8
5,395,189 - Echvi_4516 0.54 -0.7
5,395,193 + Echvi_4516 0.55 +0.1
5,395,193 + Echvi_4516 0.55 -0.1
5,395,215 + Echvi_4516 0.57 +1.0
5,395,216 - Echvi_4516 0.57 +0.5
5,395,216 - Echvi_4516 0.57 -0.3
5,395,218 + Echvi_4516 0.57 -0.9
5,395,218 + Echvi_4516 0.57 -0.9
5,395,218 + Echvi_4516 0.57 +1.2
5,395,219 - Echvi_4516 0.57 -0.4
5,395,219 - Echvi_4516 0.57 -0.6
5,395,270 - Echvi_4516 0.63 +0.3
5,395,270 - Echvi_4516 0.63 -0.1
5,395,270 - Echvi_4516 0.63 -0.8
5,395,271 + Echvi_4516 0.63 +1.1
5,395,271 + Echvi_4516 0.63 +0.1
5,395,271 + Echvi_4516 0.63 -0.2
5,395,271 + Echvi_4516 0.63 -0.5
5,395,271 + Echvi_4516 0.63 -0.5
5,395,271 + Echvi_4516 0.63 +0.2
5,395,272 - Echvi_4516 0.63 -0.6
5,395,272 - Echvi_4516 0.63 -1.2
5,395,272 - Echvi_4516 0.63 +0.4
5,395,275 - Echvi_4516 0.63 +0.5
5,395,298 + Echvi_4516 0.66 -0.5
5,395,298 + Echvi_4516 0.66 -0.7
5,395,298 + Echvi_4516 0.66 +0.6
5,395,298 + Echvi_4516 0.66 -0.4
5,395,299 - Echvi_4516 0.66 +0.7
5,395,299 - Echvi_4516 0.66 +2.0
5,395,335 + Echvi_4516 0.70 +1.0
5,395,335 + Echvi_4516 0.70 +1.2
5,395,335 + Echvi_4516 0.70 +1.7
5,395,336 - Echvi_4516 0.70 +0.2
5,395,336 - Echvi_4516 0.70 -0.5
5,395,367 - Echvi_4516 0.73 -1.2
5,395,411 + Echvi_4516 0.78 +0.4
5,395,413 + Echvi_4516 0.78 +0.3
5,395,413 + Echvi_4516 0.78 +0.3
5,395,414 - Echvi_4516 0.78 +0.1
5,395,414 - Echvi_4516 0.78 -1.5
5,395,432 + Echvi_4516 0.80 -0.1
5,395,432 + Echvi_4516 0.80 +2.7
5,395,531 - -1.5
5,395,554 + +0.3
5,395,554 + -0.6
5,395,555 - -0.4
5,395,555 - +1.0
5,395,714 + +0.4
5,395,733 + +0.4
5,395,733 + -0.0
5,395,733 + -0.4
5,395,733 + -0.3
5,395,734 - +0.4
5,395,784 + Echvi_4517 0.11 +0.7
5,395,784 + Echvi_4517 0.11 +2.1
5,395,846 + Echvi_4517 0.15 +0.1
5,395,859 + Echvi_4517 0.16 +0.5
5,395,859 + Echvi_4517 0.16 -1.1
5,395,932 + Echvi_4517 0.21 -1.0
5,395,933 - Echvi_4517 0.21 -0.2
5,395,937 + Echvi_4517 0.21 +0.1
5,395,939 + Echvi_4517 0.21 -0.2
5,396,154 + Echvi_4517 0.36 -0.1
5,396,170 - Echvi_4517 0.37 +0.5
5,396,201 + Echvi_4517 0.39 -0.7
5,396,215 + Echvi_4517 0.40 +0.4
5,396,228 - Echvi_4517 0.41 +1.1
5,396,232 - Echvi_4517 0.41 -0.2
5,396,299 - Echvi_4517 0.46 -1.5
5,396,394 + Echvi_4517 0.52 +0.6
5,396,394 + Echvi_4517 0.52 -1.0
5,396,396 + Echvi_4517 0.52 +1.3
5,396,396 + Echvi_4517 0.52 +0.5
5,396,397 - Echvi_4517 0.52 +1.8
5,396,436 - Echvi_4517 0.55 +1.2
5,396,436 - Echvi_4517 0.55 +0.5
5,396,436 - Echvi_4517 0.55 +0.6
5,396,445 + Echvi_4517 0.55 +1.4
5,396,445 + Echvi_4517 0.55 -0.0
5,396,489 + Echvi_4517 0.58 +0.5
5,396,490 - Echvi_4517 0.58 +0.8
5,396,490 - Echvi_4517 0.58 +0.4
5,396,490 - Echvi_4517 0.58 -0.0
5,396,490 - Echvi_4517 0.58 +1.3
5,396,491 + Echvi_4517 0.59 +0.2
5,396,495 + Echvi_4517 0.59 +0.2
5,396,565 - Echvi_4517 0.64 +0.1

Or see this region's nucleotide sequence