Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4152

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4151 and Echvi_4152 are separated by 176 nucleotidesEchvi_4152 and Echvi_4153 are separated by 33 nucleotides Echvi_4151: Echvi_4151 - Uncharacterized protein conserved in bacteria, at 4,966,690 to 4,969,719 _4151 Echvi_4152: Echvi_4152 - Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen, at 4,969,896 to 4,971,305 _4152 Echvi_4153: Echvi_4153 - Site-specific recombinases, DNA invertase Pin homologs, at 4,971,339 to 4,972,925 _4153 Position (kb) 4969 4970 4971 4972Strain fitness (log2 ratio) -2 -1 0 1 2at 4970.323 kb on + strand, within Echvi_4152at 4970.323 kb on + strand, within Echvi_4152at 4970.323 kb on + strand, within Echvi_4152at 4970.472 kb on + strand, within Echvi_4152at 4970.526 kb on - strand, within Echvi_4152at 4970.549 kb on + strand, within Echvi_4152at 4970.550 kb on - strand, within Echvi_4152at 4970.550 kb on - strand, within Echvi_4152at 4970.550 kb on - strand, within Echvi_4152at 4970.570 kb on + strand, within Echvi_4152at 4970.571 kb on - strand, within Echvi_4152at 4970.580 kb on + strand, within Echvi_4152at 4970.580 kb on + strand, within Echvi_4152at 4970.582 kb on + strand, within Echvi_4152at 4970.583 kb on - strand, within Echvi_4152at 4970.583 kb on - strand, within Echvi_4152at 4970.583 kb on - strand, within Echvi_4152at 4970.583 kb on - strand, within Echvi_4152at 4970.626 kb on + strand, within Echvi_4152at 4970.636 kb on + strand, within Echvi_4152at 4970.637 kb on - strand, within Echvi_4152at 4970.656 kb on + strand, within Echvi_4152at 4970.657 kb on - strand, within Echvi_4152at 4970.657 kb on - strand, within Echvi_4152at 4970.665 kb on + strand, within Echvi_4152at 4970.668 kb on - strand, within Echvi_4152at 4970.742 kb on + strand, within Echvi_4152at 4970.742 kb on + strandat 4970.743 kb on - strand, within Echvi_4152at 4970.792 kb on - strand, within Echvi_4152at 4970.888 kb on - strand, within Echvi_4152at 4970.888 kb on - strand, within Echvi_4152at 4970.892 kb on - strand, within Echvi_4152at 4970.921 kb on + strand, within Echvi_4152at 4970.931 kb on - strand, within Echvi_4152at 4970.945 kb on + strand, within Echvi_4152at 4970.945 kb on + strand, within Echvi_4152at 4970.945 kb on + strand, within Echvi_4152at 4971.299 kb on + strandat 4971.340 kb on + strandat 4971.340 kb on + strandat 4971.341 kb on - strandat 4971.341 kb on - strandat 4971.343 kb on - strandat 4971.344 kb on + strandat 4971.456 kb on + strandat 4971.475 kb on + strandat 4971.597 kb on + strand, within Echvi_4153at 4971.598 kb on - strand, within Echvi_4153at 4971.598 kb on - strand, within Echvi_4153at 4971.606 kb on + strand, within Echvi_4153at 4971.618 kb on + strand, within Echvi_4153at 4971.636 kb on + strand, within Echvi_4153at 4971.693 kb on + strand, within Echvi_4153at 4971.714 kb on + strand, within Echvi_4153at 4971.715 kb on - strand, within Echvi_4153at 4971.791 kb on + strand, within Echvi_4153at 4971.791 kb on + strand, within Echvi_4153at 4971.792 kb on - strand, within Echvi_4153at 4971.819 kb on + strand, within Echvi_4153at 4971.923 kb on + strand, within Echvi_4153at 4971.923 kb on + strand, within Echvi_4153at 4971.952 kb on - strand, within Echvi_4153at 4971.974 kb on + strand, within Echvi_4153at 4971.975 kb on - strand, within Echvi_4153at 4971.975 kb on - strand, within Echvi_4153at 4971.986 kb on + strand, within Echvi_4153at 4971.994 kb on + strand, within Echvi_4153at 4971.994 kb on + strand, within Echvi_4153at 4971.994 kb on + strand, within Echvi_4153at 4971.995 kb on - strand, within Echvi_4153at 4971.995 kb on - strand, within Echvi_4153at 4971.995 kb on - strand, within Echvi_4153at 4971.997 kb on + strand, within Echvi_4153at 4971.998 kb on - strand, within Echvi_4153at 4971.998 kb on - strand, within Echvi_4153at 4971.998 kb on - strand, within Echvi_4153at 4972.001 kb on - strand, within Echvi_4153at 4972.003 kb on + strand, within Echvi_4153at 4972.003 kb on + strand, within Echvi_4153at 4972.006 kb on + strand, within Echvi_4153at 4972.006 kb on + strand, within Echvi_4153at 4972.007 kb on - strand, within Echvi_4153at 4972.007 kb on - strand, within Echvi_4153at 4972.007 kb on - strand, within Echvi_4153at 4972.007 kb on - strand, within Echvi_4153at 4972.105 kb on - strand, within Echvi_4153at 4972.143 kb on - strand, within Echvi_4153at 4972.161 kb on + strand, within Echvi_4153at 4972.222 kb on + strand, within Echvi_4153at 4972.222 kb on + strand, within Echvi_4153at 4972.249 kb on + strand, within Echvi_4153at 4972.249 kb on + strand, within Echvi_4153

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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4,970,323 + Echvi_4152 0.30 +0.9
4,970,323 + Echvi_4152 0.30 +0.1
4,970,323 + Echvi_4152 0.30 +1.4
4,970,472 + Echvi_4152 0.41 -1.1
4,970,526 - Echvi_4152 0.45 +0.7
4,970,549 + Echvi_4152 0.46 +0.5
4,970,550 - Echvi_4152 0.46 +0.7
4,970,550 - Echvi_4152 0.46 +0.3
4,970,550 - Echvi_4152 0.46 -0.6
4,970,570 + Echvi_4152 0.48 +0.7
4,970,571 - Echvi_4152 0.48 -0.1
4,970,580 + Echvi_4152 0.49 +0.9
4,970,580 + Echvi_4152 0.49 +0.8
4,970,582 + Echvi_4152 0.49 -0.1
4,970,583 - Echvi_4152 0.49 +0.5
4,970,583 - Echvi_4152 0.49 -0.4
4,970,583 - Echvi_4152 0.49 -0.7
4,970,583 - Echvi_4152 0.49 +1.2
4,970,626 + Echvi_4152 0.52 +0.4
4,970,636 + Echvi_4152 0.52 +0.2
4,970,637 - Echvi_4152 0.53 +0.7
4,970,656 + Echvi_4152 0.54 +0.4
4,970,657 - Echvi_4152 0.54 -0.2
4,970,657 - Echvi_4152 0.54 +0.0
4,970,665 + Echvi_4152 0.55 +0.6
4,970,668 - Echvi_4152 0.55 -0.9
4,970,742 + Echvi_4152 0.60 +0.1
4,970,742 + +0.8
4,970,743 - Echvi_4152 0.60 +0.1
4,970,792 - Echvi_4152 0.64 +0.3
4,970,888 - Echvi_4152 0.70 +0.5
4,970,888 - Echvi_4152 0.70 +0.2
4,970,892 - Echvi_4152 0.71 -0.5
4,970,921 + Echvi_4152 0.73 +0.9
4,970,931 - Echvi_4152 0.73 +1.0
4,970,945 + Echvi_4152 0.74 +1.4
4,970,945 + Echvi_4152 0.74 -1.5
4,970,945 + Echvi_4152 0.74 -0.4
4,971,299 + +0.6
4,971,340 + +0.8
4,971,340 + -0.2
4,971,341 - -0.1
4,971,341 - +0.4
4,971,343 - -2.6
4,971,344 + -0.3
4,971,456 + +0.2
4,971,475 + +0.5
4,971,597 + Echvi_4153 0.16 +0.1
4,971,598 - Echvi_4153 0.16 -0.9
4,971,598 - Echvi_4153 0.16 +0.9
4,971,606 + Echvi_4153 0.17 -1.0
4,971,618 + Echvi_4153 0.18 -0.2
4,971,636 + Echvi_4153 0.19 -0.3
4,971,693 + Echvi_4153 0.22 +0.3
4,971,714 + Echvi_4153 0.24 -1.4
4,971,715 - Echvi_4153 0.24 -0.0
4,971,791 + Echvi_4153 0.28 -0.9
4,971,791 + Echvi_4153 0.28 -0.8
4,971,792 - Echvi_4153 0.29 +0.4
4,971,819 + Echvi_4153 0.30 -0.3
4,971,923 + Echvi_4153 0.37 -1.1
4,971,923 + Echvi_4153 0.37 +0.1
4,971,952 - Echvi_4153 0.39 +0.4
4,971,974 + Echvi_4153 0.40 -1.1
4,971,975 - Echvi_4153 0.40 -0.2
4,971,975 - Echvi_4153 0.40 -1.9
4,971,986 + Echvi_4153 0.41 +0.6
4,971,994 + Echvi_4153 0.41 +0.4
4,971,994 + Echvi_4153 0.41 +0.8
4,971,994 + Echvi_4153 0.41 +0.1
4,971,995 - Echvi_4153 0.41 +0.3
4,971,995 - Echvi_4153 0.41 -0.0
4,971,995 - Echvi_4153 0.41 -1.9
4,971,997 + Echvi_4153 0.41 -0.6
4,971,998 - Echvi_4153 0.42 -1.7
4,971,998 - Echvi_4153 0.42 -0.7
4,971,998 - Echvi_4153 0.42 -0.5
4,972,001 - Echvi_4153 0.42 -0.6
4,972,003 + Echvi_4153 0.42 -0.2
4,972,003 + Echvi_4153 0.42 +1.9
4,972,006 + Echvi_4153 0.42 +0.2
4,972,006 + Echvi_4153 0.42 -0.9
4,972,007 - Echvi_4153 0.42 -0.1
4,972,007 - Echvi_4153 0.42 -1.7
4,972,007 - Echvi_4153 0.42 -0.4
4,972,007 - Echvi_4153 0.42 -1.2
4,972,105 - Echvi_4153 0.48 -0.4
4,972,143 - Echvi_4153 0.51 +0.8
4,972,161 + Echvi_4153 0.52 +0.5
4,972,222 + Echvi_4153 0.56 +0.0
4,972,222 + Echvi_4153 0.56 -0.4
4,972,249 + Echvi_4153 0.57 -0.1
4,972,249 + Echvi_4153 0.57 +0.6

Or see this region's nucleotide sequence