Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3957 and Echvi_3958 are separated by 21 nucleotides Echvi_3958 and Echvi_3959 are separated by 3 nucleotides Echvi_3959 and Echvi_3960 are separated by 111 nucleotides Echvi_3960 and Echvi_3961 are separated by 97 nucleotides
Echvi_3957: Echvi_3957 - DNA ligase, NAD-dependent, at 4,741,768 to 4,744,230
_3957
Echvi_3958: Echvi_3958 - hypothetical protein, at 4,744,252 to 4,744,740
_3958
Echvi_3959: Echvi_3959 - dihydrodipicolinate synthase, at 4,744,744 to 4,745,604
_3959
Echvi_3960: Echvi_3960 - Histone H1-like protein Hc1., at 4,745,716 to 4,745,892
_3960
Echvi_3961: Echvi_3961 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 4,745,990 to 4,747,240
_3961
Position (kb)
4744
4745
4746 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4744.252 kb on - strand at 4744.441 kb on + strand, within Echvi_3958 at 4744.441 kb on + strand, within Echvi_3958 at 4744.441 kb on + strand, within Echvi_3958 at 4744.441 kb on + strand, within Echvi_3958 at 4744.442 kb on - strand, within Echvi_3958 at 4744.442 kb on - strand, within Echvi_3958 at 4744.442 kb on - strand, within Echvi_3958 at 4744.444 kb on + strand, within Echvi_3958 at 4744.444 kb on + strand, within Echvi_3958 at 4744.445 kb on - strand, within Echvi_3958 at 4744.584 kb on + strand, within Echvi_3958 at 4744.584 kb on + strand, within Echvi_3958 at 4744.656 kb on - strand, within Echvi_3958 at 4744.665 kb on - strand, within Echvi_3958 at 4745.609 kb on - strand at 4745.620 kb on + strand at 4745.620 kb on + strand at 4745.620 kb on + strand at 4745.620 kb on + strand at 4745.653 kb on + strand at 4745.654 kb on - strand at 4745.655 kb on + strand at 4745.655 kb on + strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.682 kb on - strand at 4745.712 kb on + strand at 4745.712 kb on + strand at 4745.712 kb on + strand at 4745.713 kb on - strand at 4745.714 kb on + strand at 4745.714 kb on + strand at 4745.714 kb on + strand at 4745.715 kb on - strand at 4745.717 kb on + strand at 4745.725 kb on - strand at 4745.766 kb on + strand, within Echvi_3960 at 4745.802 kb on + strand, within Echvi_3960 at 4745.871 kb on + strand, within Echvi_3960 at 4745.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 4,744,252 - +0.9 4,744,441 + Echvi_3958 0.39 +0.9 4,744,441 + Echvi_3958 0.39 +0.9 4,744,441 + Echvi_3958 0.39 -0.3 4,744,441 + Echvi_3958 0.39 +0.1 4,744,442 - Echvi_3958 0.39 -0.3 4,744,442 - Echvi_3958 0.39 -1.2 4,744,442 - Echvi_3958 0.39 -0.7 4,744,444 + Echvi_3958 0.39 +1.0 4,744,444 + Echvi_3958 0.39 +0.6 4,744,445 - Echvi_3958 0.39 +0.8 4,744,584 + Echvi_3958 0.68 +0.9 4,744,584 + Echvi_3958 0.68 +1.1 4,744,656 - Echvi_3958 0.83 -1.0 4,744,665 - Echvi_3958 0.84 -0.6 4,745,609 - -0.3 4,745,620 + -0.8 4,745,620 + -0.8 4,745,620 + +0.1 4,745,620 + -0.6 4,745,653 + -0.9 4,745,654 - -0.1 4,745,655 + -1.9 4,745,655 + -0.5 4,745,656 - -0.3 4,745,656 - +1.2 4,745,656 - -0.6 4,745,656 - +0.4 4,745,656 - -0.1 4,745,656 - -0.5 4,745,656 - +0.1 4,745,682 - -0.3 4,745,712 + -1.7 4,745,712 + +0.3 4,745,712 + -1.0 4,745,713 - -0.4 4,745,714 + -2.9 4,745,714 + -0.7 4,745,714 + -0.7 4,745,715 - -0.6 4,745,717 + -0.3 4,745,725 - +0.2 4,745,766 + Echvi_3960 0.28 -1.0 4,745,802 + Echvi_3960 0.49 -0.7 4,745,871 + Echvi_3960 0.88 -1.3 4,745,959 + -1.1
Or see this region's nucleotide sequence