Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3527

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3526 and Echvi_3527 are separated by 217 nucleotidesEchvi_3527 and Echvi_3528 are separated by 427 nucleotides Echvi_3526: Echvi_3526 - Fe2+-dicitrate sensor, membrane component, at 4,178,960 to 4,180,114 _3526 Echvi_3527: Echvi_3527 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 4,180,332 to 4,180,910 _3527 Echvi_3528: Echvi_3528 - Erythromycin esterase homolog, at 4,181,338 to 4,182,594 _3528 Position (kb) 4180 4181Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4179.375 kb on - strand, within Echvi_3526at 4179.379 kb on + strand, within Echvi_3526at 4179.442 kb on + strand, within Echvi_3526at 4179.462 kb on + strand, within Echvi_3526at 4179.462 kb on + strand, within Echvi_3526at 4179.463 kb on - strand, within Echvi_3526at 4179.463 kb on - strand, within Echvi_3526at 4179.601 kb on + strand, within Echvi_3526at 4179.602 kb on - strand, within Echvi_3526at 4179.611 kb on - strand, within Echvi_3526at 4179.611 kb on - strand, within Echvi_3526at 4179.612 kb on + strand, within Echvi_3526at 4179.654 kb on + strand, within Echvi_3526at 4179.686 kb on + strand, within Echvi_3526at 4179.692 kb on - strand, within Echvi_3526at 4179.722 kb on + strand, within Echvi_3526at 4179.723 kb on - strand, within Echvi_3526at 4179.731 kb on + strand, within Echvi_3526at 4179.732 kb on - strand, within Echvi_3526at 4179.772 kb on + strand, within Echvi_3526at 4179.785 kb on - strand, within Echvi_3526at 4179.823 kb on - strand, within Echvi_3526at 4179.831 kb on + strand, within Echvi_3526at 4179.832 kb on - strand, within Echvi_3526at 4179.891 kb on + strand, within Echvi_3526at 4179.976 kb on + strand, within Echvi_3526at 4179.977 kb on - strand, within Echvi_3526at 4179.977 kb on - strand, within Echvi_3526at 4179.977 kb on - strand, within Echvi_3526at 4179.999 kb on - strandat 4180.012 kb on - strandat 4180.089 kb on + strandat 4180.090 kb on - strandat 4180.094 kb on + strandat 4180.094 kb on + strandat 4180.095 kb on - strandat 4180.095 kb on - strandat 4180.098 kb on - strandat 4180.167 kb on - strandat 4180.177 kb on - strandat 4180.202 kb on + strandat 4180.202 kb on + strandat 4180.202 kb on + strandat 4180.203 kb on - strandat 4180.203 kb on - strandat 4180.203 kb on - strandat 4180.203 kb on - strandat 4180.279 kb on - strandat 4180.359 kb on + strandat 4180.462 kb on - strand, within Echvi_3527at 4180.462 kb on - strand, within Echvi_3527at 4180.606 kb on + strand, within Echvi_3527at 4180.607 kb on - strand, within Echvi_3527at 4180.607 kb on - strand, within Echvi_3527at 4180.647 kb on + strand, within Echvi_3527at 4180.647 kb on + strand, within Echvi_3527at 4180.688 kb on - strand, within Echvi_3527at 4180.737 kb on - strand, within Echvi_3527at 4180.741 kb on - strand, within Echvi_3527at 4180.809 kb on - strand, within Echvi_3527at 4180.809 kb on - strand, within Echvi_3527at 4180.814 kb on - strand, within Echvi_3527at 4180.816 kb on + strand, within Echvi_3527at 4180.816 kb on + strand, within Echvi_3527at 4180.816 kb on + strand, within Echvi_3527at 4180.816 kb on + strand, within Echvi_3527at 4180.816 kb on + strand, within Echvi_3527at 4180.817 kb on - strand, within Echvi_3527at 4180.817 kb on - strand, within Echvi_3527at 4180.818 kb on + strand, within Echvi_3527at 4180.819 kb on - strand, within Echvi_3527at 4180.823 kb on + strand, within Echvi_3527at 4180.860 kb on + strandat 4180.871 kb on + strandat 4180.889 kb on + strandat 4180.889 kb on + strandat 4180.890 kb on - strandat 4180.919 kb on - strandat 4180.986 kb on - strandat 4181.073 kb on + strandat 4181.074 kb on - strandat 4181.078 kb on + strandat 4181.085 kb on + strandat 4181.108 kb on + strandat 4181.108 kb on + strandat 4181.112 kb on - strandat 4181.120 kb on - strandat 4181.130 kb on + strandat 4181.131 kb on - strandat 4181.131 kb on - strandat 4181.207 kb on + strandat 4181.210 kb on - strandat 4181.210 kb on - strandat 4181.256 kb on + strandat 4181.257 kb on - strandat 4181.269 kb on + strandat 4181.269 kb on + strandat 4181.269 kb on + strandat 4181.336 kb on + strandat 4181.337 kb on - strandat 4181.337 kb on - strandat 4181.337 kb on - strandat 4181.339 kb on + strandat 4181.340 kb on - strandat 4181.340 kb on - strandat 4181.399 kb on + strandat 4181.400 kb on - strandat 4181.400 kb on - strandat 4181.400 kb on - strandat 4181.430 kb on - strandat 4181.435 kb on + strandat 4181.448 kb on - strandat 4181.449 kb on + strandat 4181.495 kb on + strand, within Echvi_3528at 4181.495 kb on + strand, within Echvi_3528at 4181.495 kb on + strand, within Echvi_3528at 4181.495 kb on + strand, within Echvi_3528at 4181.495 kb on + strand, within Echvi_3528at 4181.496 kb on - strand, within Echvi_3528at 4181.496 kb on - strand, within Echvi_3528at 4181.496 kb on - strand, within Echvi_3528at 4181.500 kb on - strand, within Echvi_3528at 4181.500 kb on - strand, within Echvi_3528at 4181.502 kb on + strand, within Echvi_3528at 4181.502 kb on + strand, within Echvi_3528at 4181.502 kb on + strand, within Echvi_3528at 4181.502 kb on + strand, within Echvi_3528at 4181.542 kb on - strand, within Echvi_3528at 4181.563 kb on + strand, within Echvi_3528at 4181.574 kb on + strand, within Echvi_3528at 4181.574 kb on + strand, within Echvi_3528at 4181.574 kb on + strand, within Echvi_3528at 4181.575 kb on - strand, within Echvi_3528at 4181.601 kb on + strand, within Echvi_3528at 4181.602 kb on - strand, within Echvi_3528at 4181.610 kb on + strand, within Echvi_3528at 4181.610 kb on + strand, within Echvi_3528at 4181.610 kb on + strand, within Echvi_3528at 4181.610 kb on + strand, within Echvi_3528at 4181.610 kb on + strand, within Echvi_3528at 4181.610 kb on + strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.611 kb on - strand, within Echvi_3528at 4181.616 kb on + strand, within Echvi_3528at 4181.619 kb on + strand, within Echvi_3528at 4181.619 kb on + strand, within Echvi_3528at 4181.619 kb on + strand, within Echvi_3528at 4181.675 kb on + strand, within Echvi_3528at 4181.676 kb on - strand, within Echvi_3528at 4181.679 kb on - strand, within Echvi_3528at 4181.679 kb on - strand, within Echvi_3528at 4181.733 kb on - strand, within Echvi_3528at 4181.733 kb on - strand, within Echvi_3528at 4181.742 kb on - strand, within Echvi_3528at 4181.742 kb on - strand, within Echvi_3528at 4181.742 kb on - strand, within Echvi_3528at 4181.746 kb on + strand, within Echvi_3528at 4181.746 kb on + strand, within Echvi_3528at 4181.747 kb on - strand, within Echvi_3528at 4181.747 kb on - strand, within Echvi_3528at 4181.747 kb on - strand, within Echvi_3528at 4181.747 kb on - strand, within Echvi_3528at 4181.748 kb on + strand, within Echvi_3528at 4181.748 kb on + strand, within Echvi_3528at 4181.748 kb on + strand, within Echvi_3528at 4181.748 kb on + strand, within Echvi_3528at 4181.749 kb on - strand, within Echvi_3528at 4181.749 kb on - strand, within Echvi_3528at 4181.755 kb on - strand, within Echvi_3528at 4181.774 kb on - strand, within Echvi_3528at 4181.814 kb on + strand, within Echvi_3528at 4181.851 kb on - strand, within Echvi_3528at 4181.910 kb on + strand, within Echvi_3528at 4181.910 kb on + strand, within Echvi_3528

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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4,179,375 - Echvi_3526 0.36 -1.3
4,179,379 + Echvi_3526 0.36 +1.3
4,179,442 + Echvi_3526 0.42 -0.8
4,179,462 + Echvi_3526 0.43 +0.4
4,179,462 + Echvi_3526 0.43 +0.3
4,179,463 - Echvi_3526 0.44 +0.5
4,179,463 - Echvi_3526 0.44 +1.3
4,179,601 + Echvi_3526 0.55 +0.2
4,179,602 - Echvi_3526 0.56 -2.1
4,179,611 - Echvi_3526 0.56 +0.2
4,179,611 - Echvi_3526 0.56 -0.5
4,179,612 + Echvi_3526 0.56 +0.1
4,179,654 + Echvi_3526 0.60 +0.2
4,179,686 + Echvi_3526 0.63 +0.3
4,179,692 - Echvi_3526 0.63 +0.4
4,179,722 + Echvi_3526 0.66 -0.1
4,179,723 - Echvi_3526 0.66 +0.2
4,179,731 + Echvi_3526 0.67 +0.1
4,179,732 - Echvi_3526 0.67 -0.0
4,179,772 + Echvi_3526 0.70 +1.4
4,179,785 - Echvi_3526 0.71 -1.0
4,179,823 - Echvi_3526 0.75 -0.9
4,179,831 + Echvi_3526 0.75 +0.6
4,179,832 - Echvi_3526 0.75 -0.3
4,179,891 + Echvi_3526 0.81 +0.2
4,179,976 + Echvi_3526 0.88 +0.2
4,179,977 - Echvi_3526 0.88 +1.0
4,179,977 - Echvi_3526 0.88 +0.4
4,179,977 - Echvi_3526 0.88 -0.7
4,179,999 - -0.5
4,180,012 - -2.1
4,180,089 + -0.0
4,180,090 - -1.4
4,180,094 + -0.0
4,180,094 + +0.6
4,180,095 - +0.4
4,180,095 - +0.5
4,180,098 - -0.5
4,180,167 - -0.2
4,180,177 - -0.1
4,180,202 + -0.5
4,180,202 + -1.3
4,180,202 + +0.3
4,180,203 - -0.9
4,180,203 - +1.5
4,180,203 - -0.2
4,180,203 - +0.4
4,180,279 - +0.6
4,180,359 + +0.0
4,180,462 - Echvi_3527 0.22 +0.7
4,180,462 - Echvi_3527 0.22 +0.5
4,180,606 + Echvi_3527 0.47 +0.5
4,180,607 - Echvi_3527 0.47 +1.2
4,180,607 - Echvi_3527 0.47 +2.5
4,180,647 + Echvi_3527 0.54 +0.3
4,180,647 + Echvi_3527 0.54 +0.8
4,180,688 - Echvi_3527 0.61 +2.9
4,180,737 - Echvi_3527 0.70 +2.1
4,180,741 - Echvi_3527 0.71 +0.4
4,180,809 - Echvi_3527 0.82 +0.5
4,180,809 - Echvi_3527 0.82 -1.8
4,180,814 - Echvi_3527 0.83 +0.6
4,180,816 + Echvi_3527 0.84 -0.1
4,180,816 + Echvi_3527 0.84 +0.3
4,180,816 + Echvi_3527 0.84 +0.9
4,180,816 + Echvi_3527 0.84 -1.8
4,180,816 + Echvi_3527 0.84 +0.2
4,180,817 - Echvi_3527 0.84 -1.3
4,180,817 - Echvi_3527 0.84 +1.0
4,180,818 + Echvi_3527 0.84 +0.5
4,180,819 - Echvi_3527 0.84 -1.4
4,180,823 + Echvi_3527 0.85 -0.1
4,180,860 + +1.2
4,180,871 + +1.0
4,180,889 + -0.6
4,180,889 + -0.2
4,180,890 - -0.1
4,180,919 - +0.4
4,180,986 - +0.7
4,181,073 + +0.4
4,181,074 - -0.4
4,181,078 + -1.3
4,181,085 + -1.0
4,181,108 + -0.7
4,181,108 + -0.9
4,181,112 - -0.2
4,181,120 - -0.4
4,181,130 + +0.4
4,181,131 - +1.0
4,181,131 - -1.2
4,181,207 + +0.2
4,181,210 - -0.7
4,181,210 - +0.8
4,181,256 + +1.1
4,181,257 - -0.5
4,181,269 + +0.1
4,181,269 + +0.6
4,181,269 + +0.8
4,181,336 + -0.1
4,181,337 - +0.2
4,181,337 - +0.8
4,181,337 - +0.9
4,181,339 + -0.4
4,181,340 - -1.0
4,181,340 - +0.9
4,181,399 + +1.0
4,181,400 - +0.7
4,181,400 - -0.2
4,181,400 - -0.1
4,181,430 - +0.1
4,181,435 + +0.0
4,181,448 - -0.4
4,181,449 + +0.6
4,181,495 + Echvi_3528 0.12 -1.0
4,181,495 + Echvi_3528 0.12 +0.8
4,181,495 + Echvi_3528 0.12 +0.4
4,181,495 + Echvi_3528 0.12 -0.6
4,181,495 + Echvi_3528 0.12 +0.6
4,181,496 - Echvi_3528 0.13 -1.4
4,181,496 - Echvi_3528 0.13 +0.6
4,181,496 - Echvi_3528 0.13 -2.0
4,181,500 - Echvi_3528 0.13 +0.1
4,181,500 - Echvi_3528 0.13 -0.9
4,181,502 + Echvi_3528 0.13 +0.1
4,181,502 + Echvi_3528 0.13 -0.2
4,181,502 + Echvi_3528 0.13 +2.0
4,181,502 + Echvi_3528 0.13 +1.3
4,181,542 - Echvi_3528 0.16 +0.7
4,181,563 + Echvi_3528 0.18 -1.3
4,181,574 + Echvi_3528 0.19 -0.3
4,181,574 + Echvi_3528 0.19 +0.5
4,181,574 + Echvi_3528 0.19 -0.0
4,181,575 - Echvi_3528 0.19 -0.3
4,181,601 + Echvi_3528 0.21 -0.5
4,181,602 - Echvi_3528 0.21 -0.8
4,181,610 + Echvi_3528 0.22 +0.5
4,181,610 + Echvi_3528 0.22 -0.2
4,181,610 + Echvi_3528 0.22 +0.6
4,181,610 + Echvi_3528 0.22 +0.4
4,181,610 + Echvi_3528 0.22 +0.6
4,181,610 + Echvi_3528 0.22 +0.0
4,181,611 - Echvi_3528 0.22 +0.9
4,181,611 - Echvi_3528 0.22 +0.5
4,181,611 - Echvi_3528 0.22 -1.8
4,181,611 - Echvi_3528 0.22 +0.6
4,181,611 - Echvi_3528 0.22 -0.5
4,181,611 - Echvi_3528 0.22 -1.0
4,181,611 - Echvi_3528 0.22 +0.6
4,181,611 - Echvi_3528 0.22 +0.6
4,181,616 + Echvi_3528 0.22 -1.1
4,181,619 + Echvi_3528 0.22 -1.9
4,181,619 + Echvi_3528 0.22 -0.6
4,181,619 + Echvi_3528 0.22 -0.2
4,181,675 + Echvi_3528 0.27 -0.4
4,181,676 - Echvi_3528 0.27 +1.1
4,181,679 - Echvi_3528 0.27 -0.9
4,181,679 - Echvi_3528 0.27 -1.2
4,181,733 - Echvi_3528 0.31 -0.0
4,181,733 - Echvi_3528 0.31 -0.4
4,181,742 - Echvi_3528 0.32 +0.0
4,181,742 - Echvi_3528 0.32 -0.1
4,181,742 - Echvi_3528 0.32 +2.0
4,181,746 + Echvi_3528 0.32 -0.3
4,181,746 + Echvi_3528 0.32 +0.3
4,181,747 - Echvi_3528 0.33 +0.1
4,181,747 - Echvi_3528 0.33 +0.5
4,181,747 - Echvi_3528 0.33 -1.2
4,181,747 - Echvi_3528 0.33 -0.4
4,181,748 + Echvi_3528 0.33 -0.6
4,181,748 + Echvi_3528 0.33 +0.2
4,181,748 + Echvi_3528 0.33 +0.1
4,181,748 + Echvi_3528 0.33 -1.2
4,181,749 - Echvi_3528 0.33 +0.5
4,181,749 - Echvi_3528 0.33 -0.5
4,181,755 - Echvi_3528 0.33 +0.8
4,181,774 - Echvi_3528 0.35 -0.1
4,181,814 + Echvi_3528 0.38 -0.6
4,181,851 - Echvi_3528 0.41 -1.0
4,181,910 + Echvi_3528 0.46 -0.3
4,181,910 + Echvi_3528 0.46 +0.5

Or see this region's nucleotide sequence