Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3256 and Echvi_3257 are separated by 252 nucleotides Echvi_3257 and Echvi_3258 are separated by 89 nucleotides Echvi_3258 and Echvi_3259 overlap by 1 nucleotides Echvi_3259 and Echvi_3260 are separated by 170 nucleotides
Echvi_3256: Echvi_3256 - AraC-type DNA-binding domain-containing proteins, at 3,861,085 to 3,862,128
_3256
Echvi_3257: Echvi_3257 - Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 3,862,381 to 3,863,526
_3257
Echvi_3258: Echvi_3258 - hypothetical protein, at 3,863,616 to 3,863,903
_3258
Echvi_3259: Echvi_3259 - Transposase and inactivated derivatives, at 3,863,903 to 3,864,244
_3259
Echvi_3260: Echvi_3260 - Transposase and inactivated derivatives, at 3,864,415 to 3,865,968
_3260
Position (kb)
3862
3863
3864 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3861.389 kb on + strand, within Echvi_3256 at 3861.389 kb on + strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.390 kb on - strand, within Echvi_3256 at 3861.399 kb on + strand, within Echvi_3256 at 3861.494 kb on - strand, within Echvi_3256 at 3861.494 kb on - strand, within Echvi_3256 at 3861.545 kb on - strand, within Echvi_3256 at 3861.545 kb on - strand, within Echvi_3256 at 3861.549 kb on + strand, within Echvi_3256 at 3861.549 kb on + strand, within Echvi_3256 at 3861.549 kb on + strand, within Echvi_3256 at 3861.562 kb on + strand, within Echvi_3256 at 3861.562 kb on + strand, within Echvi_3256 at 3861.563 kb on - strand, within Echvi_3256 at 3861.569 kb on - strand, within Echvi_3256 at 3861.572 kb on - strand, within Echvi_3256 at 3861.654 kb on + strand, within Echvi_3256 at 3861.657 kb on + strand, within Echvi_3256 at 3861.657 kb on + strand, within Echvi_3256 at 3861.658 kb on - strand, within Echvi_3256 at 3861.664 kb on + strand, within Echvi_3256 at 3861.687 kb on + strand, within Echvi_3256 at 3861.690 kb on + strand, within Echvi_3256 at 3861.691 kb on - strand, within Echvi_3256 at 3861.691 kb on - strand, within Echvi_3256 at 3861.718 kb on - strand, within Echvi_3256 at 3861.759 kb on - strand, within Echvi_3256 at 3861.759 kb on - strand, within Echvi_3256 at 3861.773 kb on - strand, within Echvi_3256 at 3861.788 kb on + strand, within Echvi_3256 at 3861.789 kb on - strand, within Echvi_3256 at 3861.805 kb on - strand, within Echvi_3256 at 3861.805 kb on - strand, within Echvi_3256 at 3861.805 kb on - strand, within Echvi_3256 at 3861.819 kb on + strand, within Echvi_3256 at 3861.819 kb on + strand, within Echvi_3256 at 3861.820 kb on - strand, within Echvi_3256 at 3861.827 kb on + strand, within Echvi_3256 at 3861.827 kb on + strand, within Echvi_3256 at 3861.828 kb on - strand, within Echvi_3256 at 3861.835 kb on - strand, within Echvi_3256 at 3861.840 kb on + strand, within Echvi_3256 at 3861.840 kb on + strand, within Echvi_3256 at 3861.841 kb on - strand, within Echvi_3256 at 3861.841 kb on - strand, within Echvi_3256 at 3861.919 kb on + strand, within Echvi_3256 at 3861.919 kb on + strand, within Echvi_3256 at 3861.919 kb on + strand, within Echvi_3256 at 3861.956 kb on - strand, within Echvi_3256 at 3861.958 kb on + strand, within Echvi_3256 at 3861.958 kb on + strand, within Echvi_3256 at 3861.959 kb on - strand, within Echvi_3256 at 3861.959 kb on - strand, within Echvi_3256 at 3861.969 kb on + strand, within Echvi_3256 at 3861.996 kb on + strand, within Echvi_3256 at 3861.997 kb on - strand, within Echvi_3256 at 3861.997 kb on - strand, within Echvi_3256 at 3861.997 kb on - strand, within Echvi_3256 at 3861.998 kb on + strand, within Echvi_3256 at 3861.998 kb on + strand, within Echvi_3256 at 3861.998 kb on + strand, within Echvi_3256 at 3861.998 kb on + strand, within Echvi_3256 at 3861.999 kb on - strand, within Echvi_3256 at 3862.009 kb on + strand, within Echvi_3256 at 3862.144 kb on + strand at 3862.144 kb on + strand at 3862.144 kb on + strand at 3862.145 kb on - strand at 3862.163 kb on + strand at 3862.163 kb on + strand at 3862.163 kb on + strand at 3862.197 kb on - strand at 3862.205 kb on + strand at 3862.216 kb on + strand at 3862.217 kb on - strand at 3862.217 kb on - strand at 3862.222 kb on + strand at 3862.223 kb on - strand at 3862.226 kb on + strand at 3862.243 kb on + strand at 3862.244 kb on - strand at 3862.311 kb on + strand at 3862.360 kb on + strand at 3862.361 kb on - strand at 3862.361 kb on - strand at 3862.397 kb on - strand at 3862.536 kb on - strand, within Echvi_3257 at 3862.587 kb on + strand, within Echvi_3257 at 3862.591 kb on + strand, within Echvi_3257 at 3862.610 kb on + strand, within Echvi_3257 at 3862.610 kb on + strand, within Echvi_3257 at 3862.610 kb on + strand, within Echvi_3257 at 3862.611 kb on - strand, within Echvi_3257 at 3862.612 kb on + strand, within Echvi_3257 at 3862.623 kb on + strand, within Echvi_3257 at 3862.623 kb on + strand, within Echvi_3257 at 3862.623 kb on + strand, within Echvi_3257 at 3862.636 kb on + strand, within Echvi_3257 at 3862.650 kb on + strand, within Echvi_3257 at 3862.650 kb on + strand, within Echvi_3257 at 3862.650 kb on + strand, within Echvi_3257 at 3862.651 kb on - strand, within Echvi_3257 at 3862.749 kb on - strand, within Echvi_3257 at 3862.859 kb on + strand, within Echvi_3257 at 3862.859 kb on + strand, within Echvi_3257 at 3862.860 kb on - strand, within Echvi_3257 at 3862.882 kb on + strand, within Echvi_3257 at 3862.883 kb on - strand, within Echvi_3257 at 3862.883 kb on - strand, within Echvi_3257 at 3862.913 kb on + strand, within Echvi_3257 at 3862.914 kb on - strand, within Echvi_3257 at 3862.914 kb on - strand, within Echvi_3257 at 3862.935 kb on + strand, within Echvi_3257 at 3862.937 kb on + strand, within Echvi_3257 at 3862.937 kb on + strand, within Echvi_3257 at 3862.937 kb on + strand, within Echvi_3257 at 3862.937 kb on + strand, within Echvi_3257 at 3862.938 kb on - strand, within Echvi_3257 at 3862.938 kb on - strand, within Echvi_3257 at 3862.981 kb on - strand, within Echvi_3257 at 3863.026 kb on + strand, within Echvi_3257 at 3863.050 kb on - strand, within Echvi_3257 at 3863.050 kb on - strand, within Echvi_3257 at 3863.095 kb on + strand, within Echvi_3257 at 3863.095 kb on + strand, within Echvi_3257 at 3863.095 kb on + strand, within Echvi_3257 at 3863.105 kb on + strand, within Echvi_3257 at 3863.105 kb on + strand, within Echvi_3257 at 3863.105 kb on + strand, within Echvi_3257 at 3863.105 kb on + strand, within Echvi_3257 at 3863.147 kb on + strand, within Echvi_3257 at 3863.219 kb on - strand, within Echvi_3257 at 3863.219 kb on - strand, within Echvi_3257 at 3863.250 kb on - strand, within Echvi_3257 at 3863.265 kb on + strand, within Echvi_3257 at 3863.266 kb on - strand, within Echvi_3257 at 3863.273 kb on + strand, within Echvi_3257 at 3863.285 kb on + strand, within Echvi_3257 at 3863.285 kb on + strand, within Echvi_3257 at 3863.301 kb on + strand, within Echvi_3257 at 3863.301 kb on + strand, within Echvi_3257 at 3863.305 kb on + strand, within Echvi_3257 at 3863.305 kb on + strand, within Echvi_3257 at 3863.305 kb on + strand, within Echvi_3257 at 3863.305 kb on + strand, within Echvi_3257 at 3863.308 kb on + strand, within Echvi_3257 at 3863.317 kb on + strand, within Echvi_3257 at 3863.317 kb on + strand, within Echvi_3257 at 3863.318 kb on - strand, within Echvi_3257 at 3863.318 kb on - strand, within Echvi_3257 at 3863.328 kb on - strand, within Echvi_3257 at 3863.340 kb on + strand, within Echvi_3257 at 3863.340 kb on + strand, within Echvi_3257 at 3863.365 kb on + strand, within Echvi_3257 at 3863.365 kb on + strand, within Echvi_3257 at 3863.366 kb on - strand, within Echvi_3257 at 3863.368 kb on - strand, within Echvi_3257 at 3863.370 kb on + strand, within Echvi_3257 at 3863.395 kb on - strand, within Echvi_3257 at 3863.410 kb on - strand at 3863.461 kb on + strand at 3863.461 kb on + strand at 3863.462 kb on - strand at 3863.505 kb on + strand at 3863.505 kb on + strand at 3863.506 kb on - strand at 3863.506 kb on - strand at 3863.514 kb on + strand at 3863.514 kb on + strand at 3863.558 kb on - strand at 3863.558 kb on - strand at 3863.563 kb on - strand at 3863.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 3,861,389 + Echvi_3256 0.29 +1.1 3,861,389 + Echvi_3256 0.29 -0.0 3,861,390 - Echvi_3256 0.29 -0.1 3,861,390 - Echvi_3256 0.29 -1.0 3,861,390 - Echvi_3256 0.29 +1.1 3,861,390 - Echvi_3256 0.29 +0.7 3,861,399 + Echvi_3256 0.30 -0.0 3,861,494 - Echvi_3256 0.39 +0.6 3,861,494 - Echvi_3256 0.39 -0.1 3,861,545 - Echvi_3256 0.44 +0.6 3,861,545 - Echvi_3256 0.44 +0.5 3,861,549 + Echvi_3256 0.44 -0.1 3,861,549 + Echvi_3256 0.44 -1.2 3,861,549 + Echvi_3256 0.44 -0.2 3,861,562 + Echvi_3256 0.46 +0.6 3,861,562 + Echvi_3256 0.46 +0.7 3,861,563 - Echvi_3256 0.46 +0.1 3,861,569 - Echvi_3256 0.46 -0.3 3,861,572 - Echvi_3256 0.47 -0.3 3,861,654 + Echvi_3256 0.55 -1.4 3,861,657 + Echvi_3256 0.55 +0.4 3,861,657 + Echvi_3256 0.55 +1.7 3,861,658 - Echvi_3256 0.55 +0.3 3,861,664 + Echvi_3256 0.55 -0.0 3,861,687 + Echvi_3256 0.58 -1.5 3,861,690 + Echvi_3256 0.58 -0.5 3,861,691 - Echvi_3256 0.58 +1.1 3,861,691 - Echvi_3256 0.58 +0.3 3,861,718 - Echvi_3256 0.61 +0.5 3,861,759 - Echvi_3256 0.65 -0.4 3,861,759 - Echvi_3256 0.65 -0.8 3,861,773 - Echvi_3256 0.66 +0.9 3,861,788 + Echvi_3256 0.67 -0.3 3,861,789 - Echvi_3256 0.67 -0.5 3,861,805 - Echvi_3256 0.69 -0.2 3,861,805 - Echvi_3256 0.69 -1.5 3,861,805 - Echvi_3256 0.69 -0.2 3,861,819 + Echvi_3256 0.70 +1.3 3,861,819 + Echvi_3256 0.70 -0.5 3,861,820 - Echvi_3256 0.70 -0.4 3,861,827 + Echvi_3256 0.71 +0.2 3,861,827 + Echvi_3256 0.71 +0.4 3,861,828 - Echvi_3256 0.71 +1.5 3,861,835 - Echvi_3256 0.72 +0.6 3,861,840 + Echvi_3256 0.72 -0.9 3,861,840 + Echvi_3256 0.72 +0.3 3,861,841 - Echvi_3256 0.72 +0.4 3,861,841 - Echvi_3256 0.72 +0.1 3,861,919 + Echvi_3256 0.80 +0.5 3,861,919 + Echvi_3256 0.80 -3.3 3,861,919 + Echvi_3256 0.80 -0.2 3,861,956 - Echvi_3256 0.83 -0.1 3,861,958 + Echvi_3256 0.84 +0.1 3,861,958 + Echvi_3256 0.84 -1.9 3,861,959 - Echvi_3256 0.84 -0.2 3,861,959 - Echvi_3256 0.84 +1.1 3,861,969 + Echvi_3256 0.85 +1.7 3,861,996 + Echvi_3256 0.87 +0.4 3,861,997 - Echvi_3256 0.87 +0.2 3,861,997 - Echvi_3256 0.87 +0.6 3,861,997 - Echvi_3256 0.87 +0.5 3,861,998 + Echvi_3256 0.87 -0.3 3,861,998 + Echvi_3256 0.87 +1.0 3,861,998 + Echvi_3256 0.87 +0.6 3,861,998 + Echvi_3256 0.87 +0.6 3,861,999 - Echvi_3256 0.88 -0.0 3,862,009 + Echvi_3256 0.89 +0.5 3,862,144 + -0.6 3,862,144 + -0.1 3,862,144 + -1.1 3,862,145 - -0.3 3,862,163 + -0.7 3,862,163 + +0.1 3,862,163 + +1.5 3,862,197 - +0.4 3,862,205 + +0.1 3,862,216 + -1.4 3,862,217 - +0.1 3,862,217 - -0.3 3,862,222 + -0.4 3,862,223 - +0.3 3,862,226 + -0.0 3,862,243 + -0.7 3,862,244 - +0.4 3,862,311 + +0.1 3,862,360 + +0.8 3,862,361 - -0.1 3,862,361 - -0.3 3,862,397 - -0.2 3,862,536 - Echvi_3257 0.14 -0.2 3,862,587 + Echvi_3257 0.18 +0.2 3,862,591 + Echvi_3257 0.18 -0.6 3,862,610 + Echvi_3257 0.20 -0.6 3,862,610 + Echvi_3257 0.20 -0.0 3,862,610 + Echvi_3257 0.20 -0.6 3,862,611 - Echvi_3257 0.20 +0.6 3,862,612 + Echvi_3257 0.20 -0.1 3,862,623 + Echvi_3257 0.21 -0.0 3,862,623 + Echvi_3257 0.21 +1.6 3,862,623 + Echvi_3257 0.21 +1.0 3,862,636 + Echvi_3257 0.22 -1.2 3,862,650 + Echvi_3257 0.23 -0.2 3,862,650 + Echvi_3257 0.23 +0.9 3,862,650 + Echvi_3257 0.23 -0.3 3,862,651 - Echvi_3257 0.24 -0.1 3,862,749 - Echvi_3257 0.32 -1.3 3,862,859 + Echvi_3257 0.42 +0.7 3,862,859 + Echvi_3257 0.42 +0.3 3,862,860 - Echvi_3257 0.42 +0.3 3,862,882 + Echvi_3257 0.44 -0.5 3,862,883 - Echvi_3257 0.44 +0.4 3,862,883 - Echvi_3257 0.44 +0.4 3,862,913 + Echvi_3257 0.46 +0.2 3,862,914 - Echvi_3257 0.47 +1.0 3,862,914 - Echvi_3257 0.47 -0.1 3,862,935 + Echvi_3257 0.48 -0.2 3,862,937 + Echvi_3257 0.49 +0.4 3,862,937 + Echvi_3257 0.49 +0.2 3,862,937 + Echvi_3257 0.49 +0.5 3,862,937 + Echvi_3257 0.49 +1.3 3,862,938 - Echvi_3257 0.49 +0.5 3,862,938 - Echvi_3257 0.49 +0.7 3,862,981 - Echvi_3257 0.52 -2.0 3,863,026 + Echvi_3257 0.56 +1.6 3,863,050 - Echvi_3257 0.58 -1.1 3,863,050 - Echvi_3257 0.58 -0.0 3,863,095 + Echvi_3257 0.62 -0.0 3,863,095 + Echvi_3257 0.62 +0.1 3,863,095 + Echvi_3257 0.62 -0.2 3,863,105 + Echvi_3257 0.63 +0.2 3,863,105 + Echvi_3257 0.63 +0.4 3,863,105 + Echvi_3257 0.63 +0.1 3,863,105 + Echvi_3257 0.63 +0.7 3,863,147 + Echvi_3257 0.67 +0.4 3,863,219 - Echvi_3257 0.73 +0.0 3,863,219 - Echvi_3257 0.73 +0.3 3,863,250 - Echvi_3257 0.76 -0.3 3,863,265 + Echvi_3257 0.77 -0.3 3,863,266 - Echvi_3257 0.77 -0.7 3,863,273 + Echvi_3257 0.78 +0.0 3,863,285 + Echvi_3257 0.79 +0.1 3,863,285 + Echvi_3257 0.79 -1.0 3,863,301 + Echvi_3257 0.80 -1.0 3,863,301 + Echvi_3257 0.80 -0.3 3,863,305 + Echvi_3257 0.81 -1.4 3,863,305 + Echvi_3257 0.81 -0.9 3,863,305 + Echvi_3257 0.81 -1.4 3,863,305 + Echvi_3257 0.81 -0.0 3,863,308 + Echvi_3257 0.81 +1.0 3,863,317 + Echvi_3257 0.82 +0.5 3,863,317 + Echvi_3257 0.82 +0.7 3,863,318 - Echvi_3257 0.82 +0.3 3,863,318 - Echvi_3257 0.82 +0.9 3,863,328 - Echvi_3257 0.83 -0.4 3,863,340 + Echvi_3257 0.84 -0.0 3,863,340 + Echvi_3257 0.84 +1.5 3,863,365 + Echvi_3257 0.86 -1.0 3,863,365 + Echvi_3257 0.86 -0.6 3,863,366 - Echvi_3257 0.86 +2.5 3,863,368 - Echvi_3257 0.86 +0.6 3,863,370 + Echvi_3257 0.86 -0.0 3,863,395 - Echvi_3257 0.88 -1.2 3,863,410 - -0.0 3,863,461 + +0.2 3,863,461 + +0.3 3,863,462 - -0.2 3,863,505 + -0.7 3,863,505 + -1.1 3,863,506 - +0.2 3,863,506 - -1.0 3,863,514 + +0.0 3,863,514 + +2.3 3,863,558 - +1.2 3,863,558 - -0.0 3,863,563 - +0.0 3,863,563 - +0.8
Or see this region's nucleotide sequence