Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2282

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2281 and Echvi_2282 are separated by 305 nucleotidesEchvi_2282 and Echvi_2283 are separated by 169 nucleotides Echvi_2281: Echvi_2281 - Predicted dehydrogenases and related proteins, at 2,701,950 to 2,703,410 _2281 Echvi_2282: Echvi_2282 - N-acetyl-beta-hexosaminidase, at 2,703,716 to 2,705,269 _2282 Echvi_2283: Echvi_2283 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 2,705,439 to 2,706,614 _2283 Position (kb) 2703 2704 2705 2706Strain fitness (log2 ratio) -2 -1 0 1 2at 2702.717 kb on + strand, within Echvi_2281at 2702.718 kb on - strand, within Echvi_2281at 2702.720 kb on - strand, within Echvi_2281at 2702.720 kb on - strand, within Echvi_2281at 2702.772 kb on - strand, within Echvi_2281at 2702.829 kb on + strand, within Echvi_2281at 2702.829 kb on + strand, within Echvi_2281at 2702.830 kb on - strand, within Echvi_2281at 2702.957 kb on + strand, within Echvi_2281at 2702.957 kb on + strand, within Echvi_2281at 2702.958 kb on - strand, within Echvi_2281at 2702.958 kb on - strand, within Echvi_2281at 2702.969 kb on - strand, within Echvi_2281at 2702.972 kb on + strand, within Echvi_2281at 2702.973 kb on - strand, within Echvi_2281at 2702.998 kb on + strand, within Echvi_2281at 2703.121 kb on + strand, within Echvi_2281at 2703.122 kb on - strand, within Echvi_2281at 2703.183 kb on + strand, within Echvi_2281at 2703.183 kb on + strand, within Echvi_2281at 2703.183 kb on + strand, within Echvi_2281at 2703.184 kb on - strand, within Echvi_2281at 2703.184 kb on - strand, within Echvi_2281at 2703.214 kb on + strand, within Echvi_2281at 2703.215 kb on - strand, within Echvi_2281at 2703.310 kb on - strandat 2703.310 kb on - strandat 2703.418 kb on - strandat 2703.706 kb on + strandat 2703.707 kb on - strandat 2703.707 kb on - strandat 2703.708 kb on + strandat 2703.710 kb on + strandat 2703.712 kb on + strandat 2703.865 kb on + strandat 2703.865 kb on + strandat 2703.880 kb on - strand, within Echvi_2282at 2703.957 kb on - strand, within Echvi_2282at 2704.034 kb on + strand, within Echvi_2282at 2704.035 kb on - strand, within Echvi_2282at 2704.036 kb on + strand, within Echvi_2282at 2704.037 kb on - strand, within Echvi_2282at 2704.037 kb on - strand, within Echvi_2282at 2704.060 kb on + strand, within Echvi_2282at 2704.104 kb on + strand, within Echvi_2282at 2704.105 kb on - strand, within Echvi_2282at 2704.123 kb on - strand, within Echvi_2282at 2704.123 kb on - strand, within Echvi_2282at 2704.126 kb on - strand, within Echvi_2282at 2704.198 kb on + strand, within Echvi_2282at 2704.208 kb on + strand, within Echvi_2282at 2704.208 kb on + strand, within Echvi_2282at 2704.208 kb on + strand, within Echvi_2282at 2704.296 kb on - strand, within Echvi_2282at 2704.303 kb on + strand, within Echvi_2282at 2704.304 kb on - strand, within Echvi_2282at 2704.307 kb on + strand, within Echvi_2282at 2704.398 kb on + strand, within Echvi_2282at 2704.436 kb on + strand, within Echvi_2282at 2704.454 kb on + strand, within Echvi_2282at 2704.475 kb on - strand, within Echvi_2282at 2704.508 kb on - strand, within Echvi_2282at 2704.508 kb on - strand, within Echvi_2282at 2704.508 kb on - strand, within Echvi_2282at 2704.508 kb on - strand, within Echvi_2282at 2704.529 kb on + strand, within Echvi_2282at 2704.569 kb on - strand, within Echvi_2282at 2704.569 kb on - strand, within Echvi_2282at 2704.569 kb on - strand, within Echvi_2282at 2704.571 kb on - strand, within Echvi_2282at 2704.571 kb on - strand, within Echvi_2282at 2704.591 kb on + strand, within Echvi_2282at 2704.591 kb on + strand, within Echvi_2282at 2704.592 kb on - strand, within Echvi_2282at 2704.595 kb on - strand, within Echvi_2282at 2704.599 kb on + strand, within Echvi_2282at 2704.600 kb on - strand, within Echvi_2282at 2704.600 kb on - strand, within Echvi_2282at 2704.600 kb on - strand, within Echvi_2282at 2704.622 kb on + strand, within Echvi_2282at 2704.656 kb on + strand, within Echvi_2282at 2704.676 kb on + strand, within Echvi_2282at 2704.677 kb on - strand, within Echvi_2282at 2704.678 kb on + strand, within Echvi_2282at 2704.678 kb on + strand, within Echvi_2282at 2704.679 kb on - strand, within Echvi_2282at 2704.679 kb on - strand, within Echvi_2282at 2704.726 kb on + strand, within Echvi_2282at 2704.727 kb on - strand, within Echvi_2282at 2704.928 kb on + strand, within Echvi_2282at 2704.929 kb on - strand, within Echvi_2282at 2704.929 kb on - strand, within Echvi_2282at 2704.967 kb on + strand, within Echvi_2282at 2704.967 kb on + strand, within Echvi_2282at 2704.967 kb on + strand, within Echvi_2282at 2704.969 kb on + strand, within Echvi_2282at 2704.970 kb on - strand, within Echvi_2282at 2704.971 kb on + strand, within Echvi_2282at 2704.971 kb on + strand, within Echvi_2282at 2704.972 kb on - strand, within Echvi_2282at 2704.988 kb on + strand, within Echvi_2282at 2704.988 kb on + strand, within Echvi_2282at 2704.989 kb on - strand, within Echvi_2282at 2704.989 kb on - strand, within Echvi_2282at 2704.990 kb on + strand, within Echvi_2282at 2704.990 kb on + strand, within Echvi_2282at 2704.990 kb on + strand, within Echvi_2282at 2704.991 kb on - strand, within Echvi_2282at 2704.991 kb on - strand, within Echvi_2282at 2705.003 kb on - strand, within Echvi_2282at 2705.003 kb on - strand, within Echvi_2282at 2705.003 kb on - strand, within Echvi_2282at 2705.036 kb on - strand, within Echvi_2282at 2705.096 kb on + strand, within Echvi_2282at 2705.096 kb on + strand, within Echvi_2282at 2705.097 kb on - strand, within Echvi_2282at 2705.097 kb on - strand, within Echvi_2282at 2705.118 kb on + strandat 2705.119 kb on - strandat 2705.158 kb on + strandat 2705.158 kb on + strandat 2705.158 kb on + strandat 2705.158 kb on + strandat 2705.159 kb on - strandat 2705.159 kb on - strandat 2705.171 kb on + strandat 2705.172 kb on - strandat 2705.194 kb on + strandat 2705.225 kb on + strandat 2705.226 kb on - strandat 2705.228 kb on + strandat 2705.229 kb on - strandat 2705.271 kb on - strandat 2705.402 kb on - strandat 2705.559 kb on + strand, within Echvi_2283at 2705.573 kb on + strand, within Echvi_2283at 2705.652 kb on - strand, within Echvi_2283at 2705.764 kb on + strand, within Echvi_2283at 2705.769 kb on + strand, within Echvi_2283at 2705.778 kb on + strand, within Echvi_2283at 2705.779 kb on - strand, within Echvi_2283at 2705.800 kb on + strand, within Echvi_2283at 2705.994 kb on - strand, within Echvi_2283at 2705.995 kb on + strand, within Echvi_2283at 2705.996 kb on - strand, within Echvi_2283at 2706.052 kb on + strand, within Echvi_2283at 2706.052 kb on + strand, within Echvi_2283at 2706.052 kb on + strand, within Echvi_2283at 2706.053 kb on - strand, within Echvi_2283at 2706.230 kb on - strand, within Echvi_2283at 2706.230 kb on - strand, within Echvi_2283at 2706.233 kb on + strand, within Echvi_2283at 2706.234 kb on - strand, within Echvi_2283at 2706.239 kb on + strand, within Echvi_2283at 2706.239 kb on + strand, within Echvi_2283at 2706.240 kb on - strand, within Echvi_2283

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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2,702,717 + Echvi_2281 0.52 +0.4
2,702,718 - Echvi_2281 0.53 -1.2
2,702,720 - Echvi_2281 0.53 -1.0
2,702,720 - Echvi_2281 0.53 -0.8
2,702,772 - Echvi_2281 0.56 +0.6
2,702,829 + Echvi_2281 0.60 +0.9
2,702,829 + Echvi_2281 0.60 +0.1
2,702,830 - Echvi_2281 0.60 -0.4
2,702,957 + Echvi_2281 0.69 +0.9
2,702,957 + Echvi_2281 0.69 -0.2
2,702,958 - Echvi_2281 0.69 -1.0
2,702,958 - Echvi_2281 0.69 -0.8
2,702,969 - Echvi_2281 0.70 -0.8
2,702,972 + Echvi_2281 0.70 +0.4
2,702,973 - Echvi_2281 0.70 -0.3
2,702,998 + Echvi_2281 0.72 +0.2
2,703,121 + Echvi_2281 0.80 -0.8
2,703,122 - Echvi_2281 0.80 +0.2
2,703,183 + Echvi_2281 0.84 -1.0
2,703,183 + Echvi_2281 0.84 +1.3
2,703,183 + Echvi_2281 0.84 +0.1
2,703,184 - Echvi_2281 0.84 +0.4
2,703,184 - Echvi_2281 0.84 +0.2
2,703,214 + Echvi_2281 0.87 -0.6
2,703,215 - Echvi_2281 0.87 +0.5
2,703,310 - +1.0
2,703,310 - +0.7
2,703,418 - -2.0
2,703,706 + +0.4
2,703,707 - -0.4
2,703,707 - -0.5
2,703,708 + -1.3
2,703,710 + +0.2
2,703,712 + -0.1
2,703,865 + -1.0
2,703,865 + -1.9
2,703,880 - Echvi_2282 0.11 +0.1
2,703,957 - Echvi_2282 0.16 -0.5
2,704,034 + Echvi_2282 0.20 -1.9
2,704,035 - Echvi_2282 0.21 -0.6
2,704,036 + Echvi_2282 0.21 -0.5
2,704,037 - Echvi_2282 0.21 +0.2
2,704,037 - Echvi_2282 0.21 -0.6
2,704,060 + Echvi_2282 0.22 -1.2
2,704,104 + Echvi_2282 0.25 +0.5
2,704,105 - Echvi_2282 0.25 -1.0
2,704,123 - Echvi_2282 0.26 +0.5
2,704,123 - Echvi_2282 0.26 +0.5
2,704,126 - Echvi_2282 0.26 -2.0
2,704,198 + Echvi_2282 0.31 -1.2
2,704,208 + Echvi_2282 0.32 -0.9
2,704,208 + Echvi_2282 0.32 -0.0
2,704,208 + Echvi_2282 0.32 -0.1
2,704,296 - Echvi_2282 0.37 +0.5
2,704,303 + Echvi_2282 0.38 -0.7
2,704,304 - Echvi_2282 0.38 -0.2
2,704,307 + Echvi_2282 0.38 -0.1
2,704,398 + Echvi_2282 0.44 +0.3
2,704,436 + Echvi_2282 0.46 -1.0
2,704,454 + Echvi_2282 0.47 -1.8
2,704,475 - Echvi_2282 0.49 -0.2
2,704,508 - Echvi_2282 0.51 -0.2
2,704,508 - Echvi_2282 0.51 -0.7
2,704,508 - Echvi_2282 0.51 -1.5
2,704,508 - Echvi_2282 0.51 +0.3
2,704,529 + Echvi_2282 0.52 -1.4
2,704,569 - Echvi_2282 0.55 -0.5
2,704,569 - Echvi_2282 0.55 +0.2
2,704,569 - Echvi_2282 0.55 -0.6
2,704,571 - Echvi_2282 0.55 -0.7
2,704,571 - Echvi_2282 0.55 -0.7
2,704,591 + Echvi_2282 0.56 -0.4
2,704,591 + Echvi_2282 0.56 -0.1
2,704,592 - Echvi_2282 0.56 +0.1
2,704,595 - Echvi_2282 0.57 +0.0
2,704,599 + Echvi_2282 0.57 -1.8
2,704,600 - Echvi_2282 0.57 -0.0
2,704,600 - Echvi_2282 0.57 -0.2
2,704,600 - Echvi_2282 0.57 -0.4
2,704,622 + Echvi_2282 0.58 +0.2
2,704,656 + Echvi_2282 0.60 -0.1
2,704,676 + Echvi_2282 0.62 -0.3
2,704,677 - Echvi_2282 0.62 -0.3
2,704,678 + Echvi_2282 0.62 +0.4
2,704,678 + Echvi_2282 0.62 -1.3
2,704,679 - Echvi_2282 0.62 -0.6
2,704,679 - Echvi_2282 0.62 -1.0
2,704,726 + Echvi_2282 0.65 +1.2
2,704,727 - Echvi_2282 0.65 +0.4
2,704,928 + Echvi_2282 0.78 +0.2
2,704,929 - Echvi_2282 0.78 -0.7
2,704,929 - Echvi_2282 0.78 -1.1
2,704,967 + Echvi_2282 0.81 -1.8
2,704,967 + Echvi_2282 0.81 -0.7
2,704,967 + Echvi_2282 0.81 -1.7
2,704,969 + Echvi_2282 0.81 +0.1
2,704,970 - Echvi_2282 0.81 -1.6
2,704,971 + Echvi_2282 0.81 -0.6
2,704,971 + Echvi_2282 0.81 +0.3
2,704,972 - Echvi_2282 0.81 -0.1
2,704,988 + Echvi_2282 0.82 -1.4
2,704,988 + Echvi_2282 0.82 +0.1
2,704,989 - Echvi_2282 0.82 -1.6
2,704,989 - Echvi_2282 0.82 -1.2
2,704,990 + Echvi_2282 0.82 -1.6
2,704,990 + Echvi_2282 0.82 -1.1
2,704,990 + Echvi_2282 0.82 +0.0
2,704,991 - Echvi_2282 0.82 +1.0
2,704,991 - Echvi_2282 0.82 -0.2
2,705,003 - Echvi_2282 0.83 -0.8
2,705,003 - Echvi_2282 0.83 +0.3
2,705,003 - Echvi_2282 0.83 +0.2
2,705,036 - Echvi_2282 0.85 +1.5
2,705,096 + Echvi_2282 0.89 -1.8
2,705,096 + Echvi_2282 0.89 -0.8
2,705,097 - Echvi_2282 0.89 -1.7
2,705,097 - Echvi_2282 0.89 -1.0
2,705,118 + -1.1
2,705,119 - -0.4
2,705,158 + +0.5
2,705,158 + +0.6
2,705,158 + -1.2
2,705,158 + -2.1
2,705,159 - +0.4
2,705,159 - +0.2
2,705,171 + -0.1
2,705,172 - -0.1
2,705,194 + -1.0
2,705,225 + -1.0
2,705,226 - -0.3
2,705,228 + +0.7
2,705,229 - -0.1
2,705,271 - -0.1
2,705,402 - +0.1
2,705,559 + Echvi_2283 0.10 -0.3
2,705,573 + Echvi_2283 0.11 -0.3
2,705,652 - Echvi_2283 0.18 +0.5
2,705,764 + Echvi_2283 0.28 -0.7
2,705,769 + Echvi_2283 0.28 +0.5
2,705,778 + Echvi_2283 0.29 -0.7
2,705,779 - Echvi_2283 0.29 -0.2
2,705,800 + Echvi_2283 0.31 -0.7
2,705,994 - Echvi_2283 0.47 +0.6
2,705,995 + Echvi_2283 0.47 +0.1
2,705,996 - Echvi_2283 0.47 -0.4
2,706,052 + Echvi_2283 0.52 +0.1
2,706,052 + Echvi_2283 0.52 -0.4
2,706,052 + Echvi_2283 0.52 -0.2
2,706,053 - Echvi_2283 0.52 +0.6
2,706,230 - Echvi_2283 0.67 +0.4
2,706,230 - Echvi_2283 0.67 -0.2
2,706,233 + Echvi_2283 0.68 +0.1
2,706,234 - Echvi_2283 0.68 +1.9
2,706,239 + Echvi_2283 0.68 +1.9
2,706,239 + Echvi_2283 0.68 +0.4
2,706,240 - Echvi_2283 0.68 +0.2

Or see this region's nucleotide sequence