Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0995

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0994 and Echvi_0995 are separated by 194 nucleotidesEchvi_0995 and Echvi_0996 are separated by 223 nucleotides Echvi_0994: Echvi_0994 - Exopolyphosphatase-related proteins, at 1,153,393 to 1,154,433 _0994 Echvi_0995: Echvi_0995 - Nucleoside diphosphate kinase, at 1,154,628 to 1,155,050 _0995 Echvi_0996: Echvi_0996 - conserved hypothetical protein, at 1,155,274 to 1,156,329 _0996 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1 2at 1154.435 kb on + strandat 1154.436 kb on - strandat 1154.436 kb on - strandat 1154.436 kb on - strandat 1154.436 kb on - strandat 1154.436 kb on - strandat 1154.459 kb on - strandat 1154.464 kb on - strandat 1154.483 kb on - strandat 1154.513 kb on + strandat 1154.536 kb on + strandat 1154.536 kb on + strandat 1154.541 kb on + strandat 1154.541 kb on + strandat 1154.547 kb on + strandat 1154.598 kb on + strandat 1154.600 kb on + strandat 1155.049 kb on - strandat 1155.049 kb on - strandat 1155.147 kb on + strandat 1155.164 kb on + strandat 1155.165 kb on - strandat 1155.173 kb on - strandat 1155.173 kb on - strandat 1155.225 kb on + strandat 1155.226 kb on - strandat 1155.226 kb on - strandat 1155.235 kb on - strandat 1155.253 kb on - strandat 1155.260 kb on + strandat 1155.261 kb on - strandat 1155.292 kb on - strandat 1155.334 kb on + strandat 1155.344 kb on + strandat 1155.344 kb on + strandat 1155.350 kb on + strandat 1155.351 kb on - strandat 1155.351 kb on - strandat 1155.353 kb on + strandat 1155.353 kb on + strandat 1155.353 kb on + strandat 1155.354 kb on - strandat 1155.354 kb on - strandat 1155.375 kb on + strandat 1155.392 kb on + strand, within Echvi_0996at 1155.392 kb on + strand, within Echvi_0996at 1155.392 kb on + strand, within Echvi_0996at 1155.392 kb on + strand, within Echvi_0996at 1155.448 kb on - strand, within Echvi_0996at 1155.450 kb on + strand, within Echvi_0996at 1155.490 kb on - strand, within Echvi_0996at 1155.490 kb on - strand, within Echvi_0996at 1155.490 kb on - strand, within Echvi_0996at 1155.490 kb on - strand, within Echvi_0996at 1155.490 kb on - strand, within Echvi_0996at 1155.511 kb on + strand, within Echvi_0996at 1155.511 kb on + strand, within Echvi_0996at 1155.511 kb on + strand, within Echvi_0996at 1155.511 kb on + strand, within Echvi_0996at 1155.511 kb on + strand, within Echvi_0996at 1155.511 kb on + strand, within Echvi_0996at 1155.512 kb on - strand, within Echvi_0996at 1155.512 kb on - strand, within Echvi_0996at 1155.512 kb on - strand, within Echvi_0996at 1155.512 kb on - strand, within Echvi_0996at 1155.540 kb on - strand, within Echvi_0996at 1155.586 kb on - strand, within Echvi_0996at 1155.609 kb on + strand, within Echvi_0996at 1155.610 kb on - strand, within Echvi_0996at 1155.610 kb on - strand, within Echvi_0996at 1155.610 kb on - strand, within Echvi_0996at 1155.617 kb on + strand, within Echvi_0996at 1155.617 kb on + strand, within Echvi_0996at 1155.618 kb on - strand, within Echvi_0996at 1155.637 kb on + strand, within Echvi_0996at 1155.637 kb on + strand, within Echvi_0996at 1155.637 kb on + strand, within Echvi_0996at 1155.638 kb on - strand, within Echvi_0996at 1155.686 kb on + strand, within Echvi_0996at 1155.686 kb on + strand, within Echvi_0996at 1155.686 kb on + strand, within Echvi_0996at 1155.686 kb on + strand, within Echvi_0996at 1155.686 kb on + strand, within Echvi_0996at 1155.687 kb on - strand, within Echvi_0996at 1155.687 kb on - strand, within Echvi_0996at 1155.687 kb on - strand, within Echvi_0996at 1155.760 kb on + strand, within Echvi_0996at 1155.760 kb on + strand, within Echvi_0996at 1155.761 kb on - strand, within Echvi_0996at 1155.786 kb on - strand, within Echvi_0996at 1155.794 kb on + strand, within Echvi_0996at 1155.804 kb on - strand, within Echvi_0996at 1155.817 kb on + strand, within Echvi_0996at 1155.817 kb on + strand, within Echvi_0996at 1155.818 kb on - strand, within Echvi_0996at 1155.821 kb on + strand, within Echvi_0996at 1155.821 kb on + strand, within Echvi_0996at 1155.822 kb on - strand, within Echvi_0996at 1155.826 kb on + strand, within Echvi_0996at 1155.826 kb on + strand, within Echvi_0996at 1155.827 kb on - strand, within Echvi_0996at 1155.874 kb on - strand, within Echvi_0996at 1155.876 kb on + strand, within Echvi_0996at 1155.877 kb on - strand, within Echvi_0996at 1155.890 kb on + strand, within Echvi_0996at 1155.891 kb on - strand, within Echvi_0996at 1155.900 kb on + strand, within Echvi_0996at 1155.900 kb on + strand, within Echvi_0996at 1155.900 kb on + strand, within Echvi_0996at 1155.901 kb on - strand, within Echvi_0996at 1155.922 kb on + strand, within Echvi_0996at 1155.922 kb on + strand, within Echvi_0996

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,154,435 + -0.1
1,154,436 - +1.3
1,154,436 - +1.3
1,154,436 - +0.5
1,154,436 - -0.6
1,154,436 - +0.1
1,154,459 - -2.5
1,154,464 - -1.0
1,154,483 - -1.1
1,154,513 + -1.3
1,154,536 + -0.3
1,154,536 + +0.2
1,154,541 + +0.2
1,154,541 + -1.4
1,154,547 + -0.0
1,154,598 + +1.1
1,154,600 + -0.6
1,155,049 - -2.2
1,155,049 - -2.4
1,155,147 + -0.6
1,155,164 + -0.1
1,155,165 - -0.2
1,155,173 - -0.3
1,155,173 - -0.1
1,155,225 + -0.1
1,155,226 - -0.4
1,155,226 - -0.6
1,155,235 - -1.2
1,155,253 - +1.2
1,155,260 + +0.1
1,155,261 - -1.1
1,155,292 - -2.3
1,155,334 + -0.2
1,155,344 + +1.1
1,155,344 + +0.4
1,155,350 + +0.2
1,155,351 - +0.0
1,155,351 - +0.4
1,155,353 + +0.5
1,155,353 + +0.2
1,155,353 + -1.4
1,155,354 - -0.4
1,155,354 - -0.9
1,155,375 + +1.5
1,155,392 + Echvi_0996 0.11 -0.3
1,155,392 + Echvi_0996 0.11 +0.4
1,155,392 + Echvi_0996 0.11 +0.6
1,155,392 + Echvi_0996 0.11 -0.5
1,155,448 - Echvi_0996 0.16 -0.4
1,155,450 + Echvi_0996 0.17 -0.1
1,155,490 - Echvi_0996 0.20 +0.1
1,155,490 - Echvi_0996 0.20 +0.0
1,155,490 - Echvi_0996 0.20 +0.4
1,155,490 - Echvi_0996 0.20 +0.1
1,155,490 - Echvi_0996 0.20 -1.5
1,155,511 + Echvi_0996 0.22 +1.1
1,155,511 + Echvi_0996 0.22 +0.5
1,155,511 + Echvi_0996 0.22 +0.3
1,155,511 + Echvi_0996 0.22 +0.1
1,155,511 + Echvi_0996 0.22 -1.3
1,155,511 + Echvi_0996 0.22 +0.0
1,155,512 - Echvi_0996 0.23 +0.5
1,155,512 - Echvi_0996 0.23 -0.1
1,155,512 - Echvi_0996 0.23 +0.2
1,155,512 - Echvi_0996 0.23 -0.2
1,155,540 - Echvi_0996 0.25 +1.2
1,155,586 - Echvi_0996 0.30 -1.5
1,155,609 + Echvi_0996 0.32 +0.0
1,155,610 - Echvi_0996 0.32 -0.1
1,155,610 - Echvi_0996 0.32 -0.9
1,155,610 - Echvi_0996 0.32 -1.7
1,155,617 + Echvi_0996 0.32 -0.3
1,155,617 + Echvi_0996 0.32 -0.4
1,155,618 - Echvi_0996 0.33 +0.6
1,155,637 + Echvi_0996 0.34 +0.5
1,155,637 + Echvi_0996 0.34 -0.8
1,155,637 + Echvi_0996 0.34 +0.7
1,155,638 - Echvi_0996 0.34 -0.9
1,155,686 + Echvi_0996 0.39 +0.6
1,155,686 + Echvi_0996 0.39 +0.1
1,155,686 + Echvi_0996 0.39 -0.7
1,155,686 + Echvi_0996 0.39 +0.8
1,155,686 + Echvi_0996 0.39 -0.1
1,155,687 - Echvi_0996 0.39 -0.1
1,155,687 - Echvi_0996 0.39 +1.1
1,155,687 - Echvi_0996 0.39 -1.8
1,155,760 + Echvi_0996 0.46 -0.8
1,155,760 + Echvi_0996 0.46 +0.4
1,155,761 - Echvi_0996 0.46 +1.9
1,155,786 - Echvi_0996 0.48 +0.0
1,155,794 + Echvi_0996 0.49 -0.4
1,155,804 - Echvi_0996 0.50 +0.7
1,155,817 + Echvi_0996 0.51 +0.6
1,155,817 + Echvi_0996 0.51 +1.1
1,155,818 - Echvi_0996 0.52 +0.0
1,155,821 + Echvi_0996 0.52 +0.0
1,155,821 + Echvi_0996 0.52 +2.2
1,155,822 - Echvi_0996 0.52 +0.2
1,155,826 + Echvi_0996 0.52 +0.3
1,155,826 + Echvi_0996 0.52 +0.3
1,155,827 - Echvi_0996 0.52 +0.9
1,155,874 - Echvi_0996 0.57 +1.0
1,155,876 + Echvi_0996 0.57 +0.1
1,155,877 - Echvi_0996 0.57 +1.0
1,155,890 + Echvi_0996 0.58 -0.2
1,155,891 - Echvi_0996 0.58 -0.4
1,155,900 + Echvi_0996 0.59 -2.0
1,155,900 + Echvi_0996 0.59 +0.6
1,155,900 + Echvi_0996 0.59 +1.2
1,155,901 - Echvi_0996 0.59 -0.0
1,155,922 + Echvi_0996 0.61 -0.5
1,155,922 + Echvi_0996 0.61 +2.5

Or see this region's nucleotide sequence