Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0841

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0839 and Echvi_0840 are separated by 72 nucleotidesEchvi_0840 and Echvi_0841 are separated by 513 nucleotidesEchvi_0841 and Echvi_0842 are separated by 281 nucleotides Echvi_0839: Echvi_0839 - Predicted membrane protein, at 959,113 to 959,811 _0839 Echvi_0840: Echvi_0840 - hypothetical protein, at 959,884 to 960,039 _0840 Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307 _0841 Echvi_0842: Echvi_0842 - Membrane proteins related to metalloendopeptidases, at 962,589 to 963,887 _0842 Position (kb) 960 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 959.560 kb on + strand, within Echvi_0839at 959.620 kb on - strand, within Echvi_0839at 959.620 kb on - strand, within Echvi_0839at 959.631 kb on + strand, within Echvi_0839at 959.631 kb on + strand, within Echvi_0839at 959.632 kb on - strand, within Echvi_0839at 959.632 kb on - strand, within Echvi_0839at 959.633 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.639 kb on + strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.640 kb on - strand, within Echvi_0839at 959.643 kb on + strand, within Echvi_0839at 959.646 kb on - strand, within Echvi_0839at 959.646 kb on - strand, within Echvi_0839at 959.676 kb on + strand, within Echvi_0839at 959.676 kb on + strand, within Echvi_0839at 959.677 kb on - strand, within Echvi_0839at 959.708 kb on + strand, within Echvi_0839at 959.708 kb on + strand, within Echvi_0839at 959.823 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.848 kb on + strandat 959.849 kb on - strandat 959.849 kb on - strandat 959.861 kb on + strandat 959.861 kb on + strandat 959.927 kb on + strand, within Echvi_0840at 959.928 kb on - strand, within Echvi_0840at 959.928 kb on - strand, within Echvi_0840at 959.938 kb on - strand, within Echvi_0840at 959.938 kb on - strand, within Echvi_0840at 959.962 kb on - strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.011 kb on + strand, within Echvi_0840at 960.013 kb on + strand, within Echvi_0840at 960.100 kb on - strandat 960.111 kb on + strandat 960.180 kb on - strandat 960.195 kb on + strandat 960.195 kb on + strandat 960.232 kb on + strandat 960.232 kb on + strandat 960.233 kb on - strandat 960.242 kb on - strandat 960.276 kb on + strandat 960.277 kb on - strandat 960.277 kb on - strandat 960.303 kb on + strandat 960.304 kb on - strandat 960.309 kb on + strandat 960.318 kb on - strandat 960.378 kb on + strandat 960.379 kb on - strandat 960.423 kb on + strandat 960.424 kb on - strandat 962.345 kb on - strandat 962.365 kb on - strandat 962.367 kb on + strandat 962.368 kb on - strandat 962.368 kb on - strandat 962.371 kb on - strandat 962.371 kb on - strandat 962.371 kb on - strandat 962.402 kb on + strandat 962.403 kb on - strandat 962.403 kb on - strandat 962.424 kb on + strandat 962.510 kb on + strandat 962.515 kb on + strandat 962.516 kb on - strandat 962.519 kb on + strandat 962.519 kb on + strandat 962.519 kb on + strandat 962.520 kb on - strandat 962.520 kb on - strandat 962.520 kb on - strandat 962.520 kb on - strandat 962.527 kb on - strandat 962.550 kb on + strandat 962.550 kb on + strandat 962.618 kb on + strandat 962.618 kb on + strandat 962.619 kb on - strandat 962.653 kb on - strandat 962.665 kb on + strandat 962.665 kb on + strandat 962.687 kb on - strandat 962.698 kb on + strandat 962.746 kb on + strand, within Echvi_0842at 962.764 kb on + strand, within Echvi_0842at 962.765 kb on - strand, within Echvi_0842at 962.782 kb on + strand, within Echvi_0842at 962.783 kb on - strand, within Echvi_0842at 962.783 kb on - strand, within Echvi_0842at 962.795 kb on - strand, within Echvi_0842at 962.839 kb on + strand, within Echvi_0842at 962.839 kb on + strand, within Echvi_0842at 962.840 kb on - strand, within Echvi_0842at 962.840 kb on - strand, within Echvi_0842at 962.897 kb on + strand, within Echvi_0842at 962.897 kb on + strand, within Echvi_0842at 962.898 kb on - strand, within Echvi_0842at 962.926 kb on + strand, within Echvi_0842at 962.927 kb on - strand, within Echvi_0842at 963.000 kb on + strand, within Echvi_0842at 963.001 kb on - strand, within Echvi_0842at 963.024 kb on + strand, within Echvi_0842at 963.024 kb on + strand, within Echvi_0842at 963.025 kb on - strand, within Echvi_0842at 963.027 kb on - strand, within Echvi_0842at 963.088 kb on + strand, within Echvi_0842at 963.088 kb on + strand, within Echvi_0842at 963.090 kb on + strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.091 kb on - strand, within Echvi_0842at 963.151 kb on - strand, within Echvi_0842at 963.259 kb on + strand, within Echvi_0842at 963.259 kb on + strand, within Echvi_0842at 963.264 kb on + strand, within Echvi_0842at 963.289 kb on - strand, within Echvi_0842at 963.291 kb on + strand, within Echvi_0842

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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959,560 + Echvi_0839 0.64 +1.1
959,620 - Echvi_0839 0.73 -0.7
959,620 - Echvi_0839 0.73 -1.8
959,631 + Echvi_0839 0.74 +0.3
959,631 + Echvi_0839 0.74 -0.5
959,632 - Echvi_0839 0.74 +0.1
959,632 - Echvi_0839 0.74 +0.3
959,633 + Echvi_0839 0.74 -0.1
959,639 + Echvi_0839 0.75 +0.4
959,639 + Echvi_0839 0.75 +1.7
959,639 + Echvi_0839 0.75 +0.1
959,639 + Echvi_0839 0.75 -0.6
959,640 - Echvi_0839 0.75 -0.4
959,640 - Echvi_0839 0.75 -1.8
959,640 - Echvi_0839 0.75 -0.2
959,640 - Echvi_0839 0.75 +1.7
959,640 - Echvi_0839 0.75 +1.1
959,640 - Echvi_0839 0.75 -0.0
959,643 + Echvi_0839 0.76 -0.1
959,646 - Echvi_0839 0.76 +0.6
959,646 - Echvi_0839 0.76 -2.4
959,676 + Echvi_0839 0.81 -1.1
959,676 + Echvi_0839 0.81 -0.2
959,677 - Echvi_0839 0.81 +0.5
959,708 + Echvi_0839 0.85 -0.6
959,708 + Echvi_0839 0.85 -0.9
959,823 + +0.6
959,848 + -0.1
959,848 + -1.1
959,848 + +0.4
959,848 + -0.8
959,848 + +0.4
959,848 + -1.2
959,849 - -0.5
959,849 - +0.2
959,861 + +0.3
959,861 + +0.3
959,927 + Echvi_0840 0.28 +0.5
959,928 - Echvi_0840 0.28 -0.3
959,928 - Echvi_0840 0.28 -1.0
959,938 - Echvi_0840 0.35 -1.8
959,938 - Echvi_0840 0.35 -0.2
959,962 - Echvi_0840 0.50 -0.0
960,011 + Echvi_0840 0.81 +0.2
960,011 + Echvi_0840 0.81 +2.3
960,011 + Echvi_0840 0.81 -2.6
960,011 + Echvi_0840 0.81 -0.5
960,013 + Echvi_0840 0.83 -1.2
960,100 - -0.0
960,111 + -0.0
960,180 - +0.1
960,195 + -1.0
960,195 + +0.1
960,232 + +4.0
960,232 + -0.1
960,233 - +0.5
960,242 - -1.5
960,276 + +0.2
960,277 - -0.2
960,277 - +0.7
960,303 + +1.0
960,304 - +0.2
960,309 + -0.3
960,318 - -0.1
960,378 + +0.4
960,379 - -0.2
960,423 + -0.8
960,424 - +0.6
962,345 - +0.0
962,365 - +0.2
962,367 + -0.0
962,368 - +0.1
962,368 - -0.4
962,371 - -0.6
962,371 - -0.2
962,371 - -3.1
962,402 + -0.2
962,403 - -0.4
962,403 - -1.0
962,424 + -0.5
962,510 + +0.5
962,515 + -2.5
962,516 - +0.1
962,519 + -1.2
962,519 + +0.0
962,519 + -2.0
962,520 - +0.7
962,520 - +1.4
962,520 - -0.2
962,520 - +0.0
962,527 - -0.4
962,550 + -1.2
962,550 + +0.7
962,618 + +0.3
962,618 + +0.4
962,619 - +1.2
962,653 - +0.6
962,665 + +0.2
962,665 + +0.5
962,687 - -0.5
962,698 + +0.0
962,746 + Echvi_0842 0.12 +0.1
962,764 + Echvi_0842 0.13 +1.5
962,765 - Echvi_0842 0.14 +0.4
962,782 + Echvi_0842 0.15 +1.0
962,783 - Echvi_0842 0.15 -0.1
962,783 - Echvi_0842 0.15 +0.6
962,795 - Echvi_0842 0.16 +0.5
962,839 + Echvi_0842 0.19 -0.2
962,839 + Echvi_0842 0.19 +1.3
962,840 - Echvi_0842 0.19 -1.0
962,840 - Echvi_0842 0.19 -0.7
962,897 + Echvi_0842 0.24 +0.6
962,897 + Echvi_0842 0.24 +0.8
962,898 - Echvi_0842 0.24 +0.2
962,926 + Echvi_0842 0.26 +0.4
962,927 - Echvi_0842 0.26 +0.5
963,000 + Echvi_0842 0.32 +0.2
963,001 - Echvi_0842 0.32 +1.2
963,024 + Echvi_0842 0.33 -0.5
963,024 + Echvi_0842 0.33 -1.0
963,025 - Echvi_0842 0.34 +0.6
963,027 - Echvi_0842 0.34 +1.0
963,088 + Echvi_0842 0.38 +0.7
963,088 + Echvi_0842 0.38 +0.1
963,090 + Echvi_0842 0.39 -2.1
963,091 - Echvi_0842 0.39 -0.4
963,091 - Echvi_0842 0.39 +0.1
963,091 - Echvi_0842 0.39 +0.7
963,091 - Echvi_0842 0.39 +0.8
963,151 - Echvi_0842 0.43 +1.4
963,259 + Echvi_0842 0.52 -0.9
963,259 + Echvi_0842 0.52 +1.1
963,264 + Echvi_0842 0.52 +0.8
963,289 - Echvi_0842 0.54 +0.1
963,291 + Echvi_0842 0.54 +0.8

Or see this region's nucleotide sequence