Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0598

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0596 and Echvi_0597 are separated by 69 nucleotidesEchvi_0597 and Echvi_0598 are separated by 6 nucleotidesEchvi_0598 and Echvi_0599 are separated by 5 nucleotidesEchvi_0599 and Echvi_0600 overlap by 12 nucleotides Echvi_0596: Echvi_0596 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 673,316 to 674,587 _0596 Echvi_0597: Echvi_0597 - Uracil phosphoribosyltransferase, at 674,657 to 675,304 _0597 Echvi_0598: Echvi_0598 - K+-dependent Na+/Ca+ exchanger related-protein, at 675,311 to 676,240 _0598 Echvi_0599: Echvi_0599 - hypothetical protein, at 676,246 to 676,704 _0599 Echvi_0600: Echvi_0600 - L-serine dehydratase, iron-sulfur-dependent, alpha subunit, at 676,693 to 677,601 _0600 Position (kb) 675 676 677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 674.334 kb on - strand, within Echvi_0596at 674.338 kb on - strand, within Echvi_0596at 674.338 kb on - strand, within Echvi_0596at 674.414 kb on + strand, within Echvi_0596at 674.414 kb on + strand, within Echvi_0596at 674.415 kb on - strand, within Echvi_0596at 674.415 kb on - strand, within Echvi_0596at 674.467 kb on - strandat 674.596 kb on + strandat 674.604 kb on + strandat 674.643 kb on + strandat 674.656 kb on + strandat 674.656 kb on + strandat 674.656 kb on + strandat 674.656 kb on + strandat 674.657 kb on - strandat 674.665 kb on - strandat 674.665 kb on - strandat 674.696 kb on + strandat 674.755 kb on + strand, within Echvi_0597at 674.766 kb on + strand, within Echvi_0597at 674.784 kb on - strand, within Echvi_0597at 674.807 kb on + strand, within Echvi_0597at 674.807 kb on + strand, within Echvi_0597at 674.807 kb on + strand, within Echvi_0597at 674.808 kb on - strand, within Echvi_0597at 674.839 kb on + strand, within Echvi_0597at 674.839 kb on + strand, within Echvi_0597at 674.840 kb on - strand, within Echvi_0597at 674.860 kb on + strand, within Echvi_0597at 674.860 kb on + strand, within Echvi_0597at 674.861 kb on - strand, within Echvi_0597at 674.922 kb on + strand, within Echvi_0597at 674.923 kb on - strand, within Echvi_0597at 674.928 kb on - strand, within Echvi_0597at 674.954 kb on - strand, within Echvi_0597at 674.956 kb on - strand, within Echvi_0597at 675.012 kb on - strand, within Echvi_0597at 675.054 kb on + strand, within Echvi_0597at 675.054 kb on + strand, within Echvi_0597at 675.055 kb on - strand, within Echvi_0597at 675.173 kb on + strand, within Echvi_0597at 675.178 kb on + strand, within Echvi_0597at 675.178 kb on + strand, within Echvi_0597at 675.179 kb on - strand, within Echvi_0597at 675.179 kb on - strand, within Echvi_0597at 675.179 kb on - strand, within Echvi_0597at 675.207 kb on + strand, within Echvi_0597at 675.207 kb on + strand, within Echvi_0597at 675.208 kb on - strand, within Echvi_0597at 675.208 kb on - strand, within Echvi_0597at 675.248 kb on + strandat 675.248 kb on + strandat 675.317 kb on + strandat 675.318 kb on - strandat 675.318 kb on - strandat 675.325 kb on - strandat 675.325 kb on - strandat 675.343 kb on + strandat 675.435 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.439 kb on - strand, within Echvi_0598at 675.506 kb on - strand, within Echvi_0598at 675.525 kb on + strand, within Echvi_0598at 675.526 kb on - strand, within Echvi_0598at 675.533 kb on - strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.579 kb on - strand, within Echvi_0598at 675.630 kb on + strand, within Echvi_0598at 675.630 kb on + strand, within Echvi_0598at 675.631 kb on - strand, within Echvi_0598at 675.650 kb on + strand, within Echvi_0598at 675.650 kb on + strand, within Echvi_0598at 675.651 kb on - strand, within Echvi_0598at 675.731 kb on + strand, within Echvi_0598at 675.732 kb on - strand, within Echvi_0598at 675.732 kb on - strand, within Echvi_0598at 675.817 kb on - strand, within Echvi_0598at 675.821 kb on + strand, within Echvi_0598at 675.821 kb on + strand, within Echvi_0598at 675.822 kb on - strand, within Echvi_0598at 675.823 kb on + strand, within Echvi_0598at 675.826 kb on - strand, within Echvi_0598at 675.826 kb on - strand, within Echvi_0598at 676.012 kb on - strand, within Echvi_0598at 676.019 kb on - strand, within Echvi_0598at 676.053 kb on + strand, within Echvi_0598at 676.063 kb on + strand, within Echvi_0598at 676.064 kb on - strand, within Echvi_0598at 676.089 kb on + strand, within Echvi_0598at 676.135 kb on + strand, within Echvi_0598at 676.141 kb on - strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.157 kb on - strandat 676.201 kb on - strandat 676.201 kb on - strandat 676.201 kb on - strandat 676.218 kb on + strandat 676.218 kb on + strandat 676.219 kb on - strandat 676.219 kb on - strandat 676.221 kb on - strandat 676.221 kb on - strandat 676.228 kb on - strandat 676.256 kb on - strandat 676.256 kb on - strandat 676.257 kb on + strandat 676.258 kb on - strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.280 kb on - strandat 676.333 kb on - strand, within Echvi_0599at 676.336 kb on + strand, within Echvi_0599at 676.336 kb on + strand, within Echvi_0599at 676.339 kb on - strand, within Echvi_0599at 676.356 kb on - strand, within Echvi_0599at 676.398 kb on + strand, within Echvi_0599at 676.568 kb on + strand, within Echvi_0599at 676.569 kb on - strand, within Echvi_0599at 676.642 kb on - strand, within Echvi_0599at 676.694 kb on + strandat 676.694 kb on + strandat 676.695 kb on - strandat 676.809 kb on + strand, within Echvi_0600at 676.847 kb on - strand, within Echvi_0600at 676.876 kb on - strand, within Echvi_0600at 676.949 kb on - strand, within Echvi_0600at 676.987 kb on + strand, within Echvi_0600at 676.988 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 677.034 kb on + strand, within Echvi_0600at 677.051 kb on + strand, within Echvi_0600at 677.215 kb on + strand, within Echvi_0600at 677.221 kb on - strand, within Echvi_0600at 677.223 kb on - strand, within Echvi_0600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
674,334 - Echvi_0596 0.80 +2.0
674,338 - Echvi_0596 0.80 +2.4
674,338 - Echvi_0596 0.80 +2.9
674,414 + Echvi_0596 0.86 -0.9
674,414 + Echvi_0596 0.86 -0.7
674,415 - Echvi_0596 0.86 +1.2
674,415 - Echvi_0596 0.86 +1.6
674,467 - +1.4
674,596 + +0.5
674,604 + +0.3
674,643 + +0.3
674,656 + -0.1
674,656 + +0.4
674,656 + +0.9
674,656 + -0.7
674,657 - -0.4
674,665 - -0.5
674,665 - -0.6
674,696 + -0.0
674,755 + Echvi_0597 0.15 -0.1
674,766 + Echvi_0597 0.17 +0.5
674,784 - Echvi_0597 0.20 +1.1
674,807 + Echvi_0597 0.23 -0.5
674,807 + Echvi_0597 0.23 +1.8
674,807 + Echvi_0597 0.23 -0.3
674,808 - Echvi_0597 0.23 -0.7
674,839 + Echvi_0597 0.28 +1.4
674,839 + Echvi_0597 0.28 -0.0
674,840 - Echvi_0597 0.28 +1.9
674,860 + Echvi_0597 0.31 -0.6
674,860 + Echvi_0597 0.31 +1.3
674,861 - Echvi_0597 0.31 +0.2
674,922 + Echvi_0597 0.41 +0.0
674,923 - Echvi_0597 0.41 +0.5
674,928 - Echvi_0597 0.42 +0.1
674,954 - Echvi_0597 0.46 +0.0
674,956 - Echvi_0597 0.46 +0.0
675,012 - Echvi_0597 0.55 +0.3
675,054 + Echvi_0597 0.61 +0.4
675,054 + Echvi_0597 0.61 -1.0
675,055 - Echvi_0597 0.61 +0.5
675,173 + Echvi_0597 0.80 -0.0
675,178 + Echvi_0597 0.80 -0.0
675,178 + Echvi_0597 0.80 +0.7
675,179 - Echvi_0597 0.81 -0.8
675,179 - Echvi_0597 0.81 -0.8
675,179 - Echvi_0597 0.81 +0.7
675,207 + Echvi_0597 0.85 +0.6
675,207 + Echvi_0597 0.85 -0.3
675,208 - Echvi_0597 0.85 +0.5
675,208 - Echvi_0597 0.85 -0.1
675,248 + -0.1
675,248 + +0.1
675,317 + +3.1
675,318 - -0.5
675,318 - +0.3
675,325 - +0.4
675,325 - -0.6
675,343 + -0.1
675,435 + Echvi_0598 0.13 +0.6
675,438 + Echvi_0598 0.14 +1.1
675,438 + Echvi_0598 0.14 +1.1
675,438 + Echvi_0598 0.14 +0.1
675,439 - Echvi_0598 0.14 +2.2
675,506 - Echvi_0598 0.21 -0.1
675,525 + Echvi_0598 0.23 +0.2
675,526 - Echvi_0598 0.23 +0.1
675,533 - Echvi_0598 0.24 +0.3
675,544 + Echvi_0598 0.25 -0.3
675,544 + Echvi_0598 0.25 -0.2
675,544 + Echvi_0598 0.25 -0.4
675,547 - Echvi_0598 0.25 -1.5
675,547 - Echvi_0598 0.25 -0.4
675,547 - Echvi_0598 0.25 +0.1
675,547 - Echvi_0598 0.25 +0.7
675,579 - Echvi_0598 0.29 +1.1
675,630 + Echvi_0598 0.34 +0.3
675,630 + Echvi_0598 0.34 +0.2
675,631 - Echvi_0598 0.34 +0.7
675,650 + Echvi_0598 0.36 -1.0
675,650 + Echvi_0598 0.36 +1.1
675,651 - Echvi_0598 0.37 -0.2
675,731 + Echvi_0598 0.45 -0.7
675,732 - Echvi_0598 0.45 +0.7
675,732 - Echvi_0598 0.45 +0.2
675,817 - Echvi_0598 0.54 -0.4
675,821 + Echvi_0598 0.55 -0.3
675,821 + Echvi_0598 0.55 +0.6
675,822 - Echvi_0598 0.55 -1.7
675,823 + Echvi_0598 0.55 +1.1
675,826 - Echvi_0598 0.55 +0.5
675,826 - Echvi_0598 0.55 -0.4
676,012 - Echvi_0598 0.75 -1.1
676,019 - Echvi_0598 0.76 -0.0
676,053 + Echvi_0598 0.80 +0.5
676,063 + Echvi_0598 0.81 +0.6
676,064 - Echvi_0598 0.81 +0.4
676,089 + Echvi_0598 0.84 -0.2
676,135 + Echvi_0598 0.89 -0.6
676,141 - Echvi_0598 0.89 +1.1
676,143 + Echvi_0598 0.89 +0.8
676,143 + Echvi_0598 0.89 +0.1
676,143 + Echvi_0598 0.89 -1.9
676,143 + Echvi_0598 0.89 +0.9
676,157 - -0.3
676,201 - +0.7
676,201 - -0.7
676,201 - +0.6
676,218 + +1.7
676,218 + +0.1
676,219 - -1.4
676,219 - +0.4
676,221 - -0.7
676,221 - -0.1
676,228 - -0.5
676,256 - -1.4
676,256 - +1.1
676,257 + +0.2
676,258 - -0.1
676,279 + -2.3
676,279 + +0.1
676,279 + -0.3
676,279 + -1.0
676,280 - +0.8
676,333 - Echvi_0599 0.19 -0.3
676,336 + Echvi_0599 0.20 -0.9
676,336 + Echvi_0599 0.20 +1.3
676,339 - Echvi_0599 0.20 -0.7
676,356 - Echvi_0599 0.24 +0.8
676,398 + Echvi_0599 0.33 +0.9
676,568 + Echvi_0599 0.70 +1.1
676,569 - Echvi_0599 0.70 -0.6
676,642 - Echvi_0599 0.86 +0.2
676,694 + +0.7
676,694 + +0.3
676,695 - -0.8
676,809 + Echvi_0600 0.13 -1.8
676,847 - Echvi_0600 0.17 +0.2
676,876 - Echvi_0600 0.20 -0.0
676,949 - Echvi_0600 0.28 -1.5
676,987 + Echvi_0600 0.32 -0.8
676,988 - Echvi_0600 0.32 -2.5
676,993 - Echvi_0600 0.33 -1.1
676,993 - Echvi_0600 0.33 +0.9
676,993 - Echvi_0600 0.33 -0.5
676,993 - Echvi_0600 0.33 -1.9
677,034 + Echvi_0600 0.38 -1.5
677,051 + Echvi_0600 0.39 +0.1
677,215 + Echvi_0600 0.57 -1.9
677,221 - Echvi_0600 0.58 -2.1
677,223 - Echvi_0600 0.58 -0.6

Or see this region's nucleotide sequence