Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0492

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0491 and Echvi_0492 are separated by 116 nucleotidesEchvi_0492 and Echvi_0493 are separated by 14 nucleotides Echvi_0491: Echvi_0491 - Domain of Unknown Function (DUF1080)., at 544,236 to 545,045 _0491 Echvi_0492: Echvi_0492 - SusD family., at 545,162 to 546,847 _0492 Echvi_0493: Echvi_0493 - TonB-linked outer membrane protein, SusC/RagA family, at 546,862 to 549,831 _0493 Position (kb) 545 546 547Strain fitness (log2 ratio) -2 -1 0 1 2at 544.184 kb on - strandat 544.207 kb on - strandat 544.223 kb on + strandat 544.265 kb on + strandat 544.265 kb on + strandat 544.309 kb on + strandat 544.309 kb on + strandat 544.310 kb on - strandat 544.391 kb on + strand, within Echvi_0491at 544.483 kb on + strand, within Echvi_0491at 544.484 kb on - strand, within Echvi_0491at 544.505 kb on + strand, within Echvi_0491at 544.562 kb on + strand, within Echvi_0491at 544.644 kb on + strand, within Echvi_0491at 544.685 kb on + strand, within Echvi_0491at 544.691 kb on + strand, within Echvi_0491at 544.691 kb on + strand, within Echvi_0491at 544.692 kb on - strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.698 kb on - strand, within Echvi_0491at 544.699 kb on + strand, within Echvi_0491at 544.699 kb on + strand, within Echvi_0491at 544.816 kb on + strand, within Echvi_0491at 544.825 kb on + strand, within Echvi_0491at 544.826 kb on - strand, within Echvi_0491at 544.826 kb on - strand, within Echvi_0491at 545.077 kb on - strandat 545.147 kb on + strandat 545.248 kb on + strandat 545.248 kb on + strandat 545.395 kb on + strand, within Echvi_0492at 545.520 kb on + strand, within Echvi_0492at 545.589 kb on + strand, within Echvi_0492at 545.589 kb on + strand, within Echvi_0492at 545.589 kb on + strand, within Echvi_0492at 545.590 kb on - strand, within Echvi_0492at 545.610 kb on + strand, within Echvi_0492at 545.610 kb on + strand, within Echvi_0492at 545.610 kb on + strand, within Echvi_0492at 545.619 kb on + strand, within Echvi_0492at 545.619 kb on + strand, within Echvi_0492at 545.620 kb on - strand, within Echvi_0492at 545.625 kb on + strand, within Echvi_0492at 545.625 kb on + strand, within Echvi_0492at 545.625 kb on + strand, within Echvi_0492at 545.626 kb on - strand, within Echvi_0492at 545.626 kb on - strand, within Echvi_0492at 545.628 kb on - strand, within Echvi_0492at 545.724 kb on + strand, within Echvi_0492at 545.724 kb on + strand, within Echvi_0492at 545.724 kb on + strand, within Echvi_0492at 545.725 kb on - strand, within Echvi_0492at 545.725 kb on - strand, within Echvi_0492at 545.755 kb on + strand, within Echvi_0492at 545.799 kb on + strand, within Echvi_0492at 545.800 kb on - strand, within Echvi_0492at 545.821 kb on + strand, within Echvi_0492at 545.825 kb on - strand, within Echvi_0492at 546.080 kb on + strand, within Echvi_0492at 546.081 kb on - strand, within Echvi_0492at 546.115 kb on + strand, within Echvi_0492at 546.156 kb on + strand, within Echvi_0492at 546.159 kb on - strand, within Echvi_0492at 546.268 kb on + strand, within Echvi_0492at 546.269 kb on - strand, within Echvi_0492at 546.335 kb on + strand, within Echvi_0492at 546.367 kb on + strand, within Echvi_0492at 546.372 kb on + strand, within Echvi_0492at 546.373 kb on - strand, within Echvi_0492at 546.458 kb on - strand, within Echvi_0492at 546.481 kb on + strand, within Echvi_0492at 546.498 kb on + strand, within Echvi_0492at 546.498 kb on + strand, within Echvi_0492at 546.499 kb on - strand, within Echvi_0492at 546.499 kb on - strand, within Echvi_0492at 546.510 kb on - strand, within Echvi_0492at 546.514 kb on + strand, within Echvi_0492at 546.514 kb on + strand, within Echvi_0492at 546.549 kb on + strand, within Echvi_0492at 546.655 kb on + strand, within Echvi_0492at 546.670 kb on - strand, within Echvi_0492at 546.675 kb on + strand, within Echvi_0492at 546.676 kb on - strand, within Echvi_0492at 546.676 kb on - strand, within Echvi_0492at 546.747 kb on - strandat 546.796 kb on + strandat 546.797 kb on - strandat 546.816 kb on - strandat 546.821 kb on + strandat 546.839 kb on + strandat 546.839 kb on + strandat 546.839 kb on + strandat 546.841 kb on + strandat 546.841 kb on + strandat 546.863 kb on + strandat 546.871 kb on + strandat 546.876 kb on + strandat 546.908 kb on + strandat 546.908 kb on + strandat 546.908 kb on + strandat 546.908 kb on + strandat 546.912 kb on + strandat 547.031 kb on + strandat 547.031 kb on + strandat 547.032 kb on - strandat 547.032 kb on - strandat 547.061 kb on + strandat 547.091 kb on + strandat 547.091 kb on + strandat 547.095 kb on + strandat 547.095 kb on + strandat 547.095 kb on + strandat 547.096 kb on - strandat 547.096 kb on - strandat 547.096 kb on - strandat 547.097 kb on + strandat 547.097 kb on + strandat 547.098 kb on - strandat 547.098 kb on - strandat 547.098 kb on - strandat 547.133 kb on + strandat 547.133 kb on + strandat 547.134 kb on - strandat 547.134 kb on - strandat 547.187 kb on + strand, within Echvi_0493at 547.187 kb on + strand, within Echvi_0493at 547.188 kb on - strand, within Echvi_0493at 547.464 kb on + strand, within Echvi_0493at 547.465 kb on - strand, within Echvi_0493at 547.465 kb on - strand, within Echvi_0493at 547.509 kb on + strand, within Echvi_0493at 547.528 kb on - strand, within Echvi_0493at 547.528 kb on - strand, within Echvi_0493at 547.559 kb on - strand, within Echvi_0493at 547.569 kb on + strand, within Echvi_0493at 547.569 kb on + strand, within Echvi_0493at 547.571 kb on + strand, within Echvi_0493at 547.572 kb on - strand, within Echvi_0493at 547.691 kb on + strand, within Echvi_0493at 547.692 kb on - strand, within Echvi_0493at 547.692 kb on - strand, within Echvi_0493at 547.708 kb on + strand, within Echvi_0493at 547.728 kb on + strand, within Echvi_0493at 547.728 kb on + strand, within Echvi_0493at 547.729 kb on - strand, within Echvi_0493at 547.747 kb on - strand, within Echvi_0493at 547.748 kb on + strand, within Echvi_0493at 547.773 kb on + strand, within Echvi_0493

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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544,184 - +2.1
544,207 - -0.7
544,223 + -0.8
544,265 + -0.7
544,265 + +0.2
544,309 + -0.7
544,309 + -1.7
544,310 - -0.8
544,391 + Echvi_0491 0.19 -1.6
544,483 + Echvi_0491 0.30 -0.3
544,484 - Echvi_0491 0.31 -1.3
544,505 + Echvi_0491 0.33 +1.5
544,562 + Echvi_0491 0.40 -1.9
544,644 + Echvi_0491 0.50 +0.8
544,685 + Echvi_0491 0.55 +0.1
544,691 + Echvi_0491 0.56 -1.2
544,691 + Echvi_0491 0.56 +0.7
544,692 - Echvi_0491 0.56 -0.5
544,693 + Echvi_0491 0.56 +1.2
544,693 + Echvi_0491 0.56 -0.0
544,693 + Echvi_0491 0.56 -2.3
544,697 + Echvi_0491 0.57 -1.2
544,697 + Echvi_0491 0.57 +0.1
544,697 + Echvi_0491 0.57 +0.2
544,698 - Echvi_0491 0.57 -1.1
544,699 + Echvi_0491 0.57 +0.1
544,699 + Echvi_0491 0.57 -1.2
544,816 + Echvi_0491 0.72 +0.3
544,825 + Echvi_0491 0.73 -0.7
544,826 - Echvi_0491 0.73 -0.1
544,826 - Echvi_0491 0.73 -0.0
545,077 - -0.6
545,147 + -0.0
545,248 + +0.2
545,248 + -1.4
545,395 + Echvi_0492 0.14 -1.6
545,520 + Echvi_0492 0.21 -0.6
545,589 + Echvi_0492 0.25 +0.5
545,589 + Echvi_0492 0.25 -0.2
545,589 + Echvi_0492 0.25 -1.2
545,590 - Echvi_0492 0.25 -1.2
545,610 + Echvi_0492 0.27 -0.5
545,610 + Echvi_0492 0.27 -1.4
545,610 + Echvi_0492 0.27 -0.5
545,619 + Echvi_0492 0.27 -0.6
545,619 + Echvi_0492 0.27 -0.8
545,620 - Echvi_0492 0.27 +0.9
545,625 + Echvi_0492 0.27 -0.8
545,625 + Echvi_0492 0.27 -0.8
545,625 + Echvi_0492 0.27 -0.1
545,626 - Echvi_0492 0.28 -0.8
545,626 - Echvi_0492 0.28 -0.6
545,628 - Echvi_0492 0.28 +1.9
545,724 + Echvi_0492 0.33 -0.4
545,724 + Echvi_0492 0.33 -0.8
545,724 + Echvi_0492 0.33 +0.3
545,725 - Echvi_0492 0.33 +0.0
545,725 - Echvi_0492 0.33 -0.2
545,755 + Echvi_0492 0.35 -1.6
545,799 + Echvi_0492 0.38 -0.3
545,800 - Echvi_0492 0.38 +0.5
545,821 + Echvi_0492 0.39 +0.6
545,825 - Echvi_0492 0.39 -1.8
546,080 + Echvi_0492 0.54 -0.5
546,081 - Echvi_0492 0.55 -0.2
546,115 + Echvi_0492 0.57 +0.9
546,156 + Echvi_0492 0.59 +0.0
546,159 - Echvi_0492 0.59 -0.9
546,268 + Echvi_0492 0.66 -0.3
546,269 - Echvi_0492 0.66 +0.6
546,335 + Echvi_0492 0.70 -0.6
546,367 + Echvi_0492 0.71 -1.0
546,372 + Echvi_0492 0.72 +1.6
546,373 - Echvi_0492 0.72 -1.1
546,458 - Echvi_0492 0.77 -0.6
546,481 + Echvi_0492 0.78 +0.3
546,498 + Echvi_0492 0.79 +0.1
546,498 + Echvi_0492 0.79 -0.1
546,499 - Echvi_0492 0.79 +0.6
546,499 - Echvi_0492 0.79 +0.3
546,510 - Echvi_0492 0.80 +0.1
546,514 + Echvi_0492 0.80 +1.2
546,514 + Echvi_0492 0.80 +1.2
546,549 + Echvi_0492 0.82 -0.0
546,655 + Echvi_0492 0.89 -0.9
546,670 - Echvi_0492 0.89 +0.0
546,675 + Echvi_0492 0.90 +0.1
546,676 - Echvi_0492 0.90 -0.7
546,676 - Echvi_0492 0.90 -0.5
546,747 - +0.1
546,796 + -0.0
546,797 - +1.5
546,816 - -0.5
546,821 + -0.4
546,839 + -0.5
546,839 + -1.1
546,839 + -0.4
546,841 + +0.8
546,841 + -0.9
546,863 + +0.2
546,871 + -0.1
546,876 + +0.3
546,908 + -1.3
546,908 + -0.5
546,908 + +0.7
546,908 + -0.1
546,912 + -0.2
547,031 + -0.6
547,031 + +0.5
547,032 - -0.2
547,032 - -1.3
547,061 + -0.0
547,091 + +0.4
547,091 + +0.1
547,095 + -1.3
547,095 + +0.0
547,095 + -0.2
547,096 - +1.3
547,096 - +0.1
547,096 - -1.1
547,097 + +1.1
547,097 + -0.0
547,098 - +1.6
547,098 - -0.7
547,098 - +1.1
547,133 + -1.0
547,133 + +0.4
547,134 - +0.1
547,134 - +0.6
547,187 + Echvi_0493 0.11 +0.0
547,187 + Echvi_0493 0.11 -0.5
547,188 - Echvi_0493 0.11 +0.3
547,464 + Echvi_0493 0.20 +1.3
547,465 - Echvi_0493 0.20 -0.4
547,465 - Echvi_0493 0.20 -1.4
547,509 + Echvi_0493 0.22 +0.1
547,528 - Echvi_0493 0.22 +0.1
547,528 - Echvi_0493 0.22 -0.1
547,559 - Echvi_0493 0.23 -2.4
547,569 + Echvi_0493 0.24 -0.3
547,569 + Echvi_0493 0.24 -0.0
547,571 + Echvi_0493 0.24 +0.5
547,572 - Echvi_0493 0.24 -0.4
547,691 + Echvi_0493 0.28 -1.1
547,692 - Echvi_0493 0.28 +0.9
547,692 - Echvi_0493 0.28 -1.2
547,708 + Echvi_0493 0.28 -0.7
547,728 + Echvi_0493 0.29 -1.3
547,728 + Echvi_0493 0.29 -0.0
547,729 - Echvi_0493 0.29 +0.1
547,747 - Echvi_0493 0.30 -1.4
547,748 + Echvi_0493 0.30 +0.4
547,773 + Echvi_0493 0.31 -0.3

Or see this region's nucleotide sequence