Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0481

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0480 and Echvi_0481 are separated by 183 nucleotidesEchvi_0481 and Echvi_0482 are separated by 221 nucleotidesEchvi_0482 and Echvi_0483 are separated by 76 nucleotides Echvi_0480: Echvi_0480 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 528,328 to 529,257 _0480 Echvi_0481: Echvi_0481 - NAD-dependent aldehyde dehydrogenases, at 529,441 to 530,970 _0481 Echvi_0482: Echvi_0482 - Uncharacterized protein conserved in bacteria, at 531,192 to 531,626 _0482 Echvi_0483: Echvi_0483 - hypothetical protein, at 531,703 to 532,836 _0483 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.511 kb on - strand, within Echvi_0480at 528.598 kb on + strand, within Echvi_0480at 528.599 kb on - strand, within Echvi_0480at 528.599 kb on - strand, within Echvi_0480at 528.604 kb on + strand, within Echvi_0480at 528.604 kb on + strand, within Echvi_0480at 528.632 kb on + strand, within Echvi_0480at 528.637 kb on + strand, within Echvi_0480at 528.822 kb on + strand, within Echvi_0480at 528.822 kb on + strand, within Echvi_0480at 528.888 kb on - strand, within Echvi_0480at 528.888 kb on - strand, within Echvi_0480at 528.988 kb on - strand, within Echvi_0480at 528.989 kb on + strand, within Echvi_0480at 528.989 kb on + strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 529.134 kb on - strand, within Echvi_0480at 529.138 kb on - strand, within Echvi_0480at 529.138 kb on - strand, within Echvi_0480at 529.226 kb on + strandat 529.227 kb on - strandat 529.239 kb on + strandat 529.240 kb on - strandat 529.240 kb on - strandat 529.262 kb on - strandat 529.274 kb on - strandat 529.286 kb on + strandat 529.287 kb on - strandat 529.287 kb on - strandat 529.338 kb on + strandat 529.354 kb on + strandat 529.399 kb on - strandat 529.399 kb on - strandat 529.438 kb on - strandat 529.438 kb on - strandat 529.446 kb on + strandat 529.447 kb on - strandat 529.447 kb on - strandat 529.451 kb on + strandat 529.505 kb on - strandat 529.505 kb on - strandat 529.696 kb on - strand, within Echvi_0481at 529.720 kb on - strand, within Echvi_0481at 529.739 kb on - strand, within Echvi_0481at 529.739 kb on - strand, within Echvi_0481at 529.742 kb on + strand, within Echvi_0481at 529.743 kb on - strand, within Echvi_0481at 529.751 kb on + strand, within Echvi_0481at 529.751 kb on + strand, within Echvi_0481at 529.764 kb on + strand, within Echvi_0481at 529.778 kb on + strand, within Echvi_0481at 529.885 kb on - strand, within Echvi_0481at 529.885 kb on - strand, within Echvi_0481at 530.001 kb on + strand, within Echvi_0481at 530.001 kb on + strand, within Echvi_0481at 530.201 kb on - strand, within Echvi_0481at 530.389 kb on + strand, within Echvi_0481at 530.390 kb on - strand, within Echvi_0481at 530.411 kb on + strand, within Echvi_0481at 530.512 kb on + strand, within Echvi_0481at 530.512 kb on + strand, within Echvi_0481at 530.512 kb on + strand, within Echvi_0481at 530.513 kb on - strand, within Echvi_0481at 530.600 kb on - strand, within Echvi_0481at 530.610 kb on + strand, within Echvi_0481at 530.611 kb on - strand, within Echvi_0481at 530.611 kb on - strand, within Echvi_0481at 530.611 kb on - strand, within Echvi_0481at 530.732 kb on - strand, within Echvi_0481at 530.732 kb on - strand, within Echvi_0481at 530.732 kb on - strand, within Echvi_0481at 530.739 kb on - strand, within Echvi_0481at 530.739 kb on - strand, within Echvi_0481at 530.751 kb on - strand, within Echvi_0481at 530.817 kb on - strand, within Echvi_0481at 530.958 kb on - strandat 530.984 kb on + strandat 530.994 kb on + strandat 531.003 kb on + strandat 531.007 kb on + strandat 531.007 kb on + strandat 531.007 kb on + strandat 531.010 kb on - strandat 531.010 kb on - strandat 531.010 kb on - strandat 531.101 kb on - strandat 531.148 kb on + strandat 531.153 kb on + strandat 531.207 kb on - strandat 531.216 kb on - strandat 531.216 kb on - strandat 531.268 kb on + strand, within Echvi_0482at 531.442 kb on - strand, within Echvi_0482at 531.442 kb on - strand, within Echvi_0482at 531.622 kb on + strandat 531.622 kb on + strandat 531.622 kb on + strandat 531.623 kb on - strandat 531.623 kb on - strandat 531.625 kb on - strandat 531.625 kb on - strandat 531.625 kb on - strandat 531.626 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.627 kb on + strandat 531.628 kb on - strandat 531.628 kb on - strandat 531.628 kb on - strandat 531.631 kb on + strandat 531.631 kb on + strandat 531.632 kb on - strandat 531.632 kb on - strandat 531.637 kb on - strandat 531.647 kb on + strandat 531.694 kb on + strandat 531.695 kb on - strandat 531.695 kb on - strandat 531.831 kb on + strand, within Echvi_0483at 531.832 kb on - strand, within Echvi_0483at 531.916 kb on - strand, within Echvi_0483

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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528,511 - Echvi_0480 0.20 -0.8
528,598 + Echvi_0480 0.29 +0.3
528,599 - Echvi_0480 0.29 -0.3
528,599 - Echvi_0480 0.29 +0.8
528,604 + Echvi_0480 0.30 +0.8
528,604 + Echvi_0480 0.30 -0.2
528,632 + Echvi_0480 0.33 +0.3
528,637 + Echvi_0480 0.33 +0.6
528,822 + Echvi_0480 0.53 -0.2
528,822 + Echvi_0480 0.53 +1.0
528,888 - Echvi_0480 0.60 -0.8
528,888 - Echvi_0480 0.60 -1.1
528,988 - Echvi_0480 0.71 -1.6
528,989 + Echvi_0480 0.71 -0.2
528,989 + Echvi_0480 0.71 +1.2
528,990 - Echvi_0480 0.71 +0.4
528,990 - Echvi_0480 0.71 -0.3
528,990 - Echvi_0480 0.71 -0.2
529,134 - Echvi_0480 0.87 -0.5
529,138 - Echvi_0480 0.87 +0.0
529,138 - Echvi_0480 0.87 -0.3
529,226 + +1.3
529,227 - +0.6
529,239 + -0.2
529,240 - +0.1
529,240 - +0.1
529,262 - +0.8
529,274 - +0.7
529,286 + +0.2
529,287 - -0.6
529,287 - +1.1
529,338 + -0.2
529,354 + -0.4
529,399 - +1.5
529,399 - -0.4
529,438 - +0.0
529,438 - -0.9
529,446 + +1.4
529,447 - +1.1
529,447 - +0.1
529,451 + -0.7
529,505 - +0.3
529,505 - +0.7
529,696 - Echvi_0481 0.17 -1.7
529,720 - Echvi_0481 0.18 +0.5
529,739 - Echvi_0481 0.19 +0.6
529,739 - Echvi_0481 0.19 -0.8
529,742 + Echvi_0481 0.20 +0.1
529,743 - Echvi_0481 0.20 -0.6
529,751 + Echvi_0481 0.20 +0.9
529,751 + Echvi_0481 0.20 +0.8
529,764 + Echvi_0481 0.21 +0.1
529,778 + Echvi_0481 0.22 -0.8
529,885 - Echvi_0481 0.29 -0.1
529,885 - Echvi_0481 0.29 +0.1
530,001 + Echvi_0481 0.37 -0.6
530,001 + Echvi_0481 0.37 -1.6
530,201 - Echvi_0481 0.50 -0.3
530,389 + Echvi_0481 0.62 +1.1
530,390 - Echvi_0481 0.62 +0.7
530,411 + Echvi_0481 0.63 -1.3
530,512 + Echvi_0481 0.70 -2.0
530,512 + Echvi_0481 0.70 -0.6
530,512 + Echvi_0481 0.70 -1.6
530,513 - Echvi_0481 0.70 -0.6
530,600 - Echvi_0481 0.76 +0.7
530,610 + Echvi_0481 0.76 +0.1
530,611 - Echvi_0481 0.76 -1.2
530,611 - Echvi_0481 0.76 -0.7
530,611 - Echvi_0481 0.76 -0.3
530,732 - Echvi_0481 0.84 -1.1
530,732 - Echvi_0481 0.84 +1.3
530,732 - Echvi_0481 0.84 -0.3
530,739 - Echvi_0481 0.85 -1.1
530,739 - Echvi_0481 0.85 +0.1
530,751 - Echvi_0481 0.86 -0.7
530,817 - Echvi_0481 0.90 -0.5
530,958 - -0.2
530,984 + -1.1
530,994 + +0.3
531,003 + +0.6
531,007 + -0.3
531,007 + +1.7
531,007 + +1.9
531,010 - +0.1
531,010 - +0.2
531,010 - +0.8
531,101 - +1.1
531,148 + +0.3
531,153 + +0.8
531,207 - +0.4
531,216 - -2.1
531,216 - -1.6
531,268 + Echvi_0482 0.17 -1.1
531,442 - Echvi_0482 0.57 -0.9
531,442 - Echvi_0482 0.57 +0.1
531,622 + +0.4
531,622 + -0.0
531,622 + -0.5
531,623 - -1.0
531,623 - +0.9
531,625 - -0.2
531,625 - -0.7
531,625 - -0.7
531,626 + +0.2
531,627 + +2.2
531,627 + +0.3
531,627 + -0.8
531,627 + -0.2
531,627 + -1.1
531,628 - +1.7
531,628 - -0.3
531,628 - -0.5
531,631 + +1.2
531,631 + -0.5
531,632 - -2.1
531,632 - +0.2
531,637 - +0.7
531,647 + -1.4
531,694 + -0.4
531,695 - +0.2
531,695 - -1.0
531,831 + Echvi_0483 0.11 -1.0
531,832 - Echvi_0483 0.11 +0.0
531,916 - Echvi_0483 0.19 -0.2

Or see this region's nucleotide sequence