Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0153

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0152 and Echvi_0153 are separated by 205 nucleotidesEchvi_0153 and Echvi_0154 are separated by 59 nucleotides Echvi_0152: Echvi_0152 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 152,977 to 154,506 _0152 Echvi_0153: Echvi_0153 - Predicted dehydrogenases and related proteins, at 154,712 to 156,124 _0153 Echvi_0154: Echvi_0154 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 156,184 to 157,167 _0154 Position (kb) 154 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2 3at 154.624 kb on + strandat 154.624 kb on + strandat 154.628 kb on - strandat 154.632 kb on + strandat 154.646 kb on + strandat 154.667 kb on + strandat 154.721 kb on + strandat 154.722 kb on - strandat 154.750 kb on + strandat 154.813 kb on + strandat 154.875 kb on + strand, within Echvi_0153at 154.876 kb on - strand, within Echvi_0153at 154.876 kb on - strand, within Echvi_0153at 155.197 kb on + strand, within Echvi_0153at 155.203 kb on + strand, within Echvi_0153at 155.222 kb on - strand, within Echvi_0153at 155.229 kb on + strand, within Echvi_0153at 155.446 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.471 kb on + strand, within Echvi_0153at 155.472 kb on - strand, within Echvi_0153at 155.472 kb on - strand, within Echvi_0153at 155.473 kb on + strand, within Echvi_0153at 155.474 kb on - strand, within Echvi_0153at 155.475 kb on + strand, within Echvi_0153at 155.475 kb on + strand, within Echvi_0153at 155.475 kb on + strand, within Echvi_0153at 155.475 kb on + strand, within Echvi_0153at 155.475 kb on + strand, within Echvi_0153at 155.476 kb on - strand, within Echvi_0153at 155.525 kb on - strand, within Echvi_0153at 155.665 kb on + strand, within Echvi_0153at 155.683 kb on - strand, within Echvi_0153at 155.722 kb on + strand, within Echvi_0153at 155.726 kb on + strand, within Echvi_0153at 155.726 kb on + strand, within Echvi_0153at 155.726 kb on + strand, within Echvi_0153at 155.726 kb on + strand, within Echvi_0153at 155.727 kb on - strand, within Echvi_0153at 155.727 kb on - strand, within Echvi_0153at 155.769 kb on + strand, within Echvi_0153at 155.788 kb on + strand, within Echvi_0153at 155.789 kb on - strand, within Echvi_0153at 155.825 kb on + strand, within Echvi_0153at 155.946 kb on - strand, within Echvi_0153at 155.946 kb on - strand, within Echvi_0153at 155.959 kb on + strand, within Echvi_0153at 155.980 kb on + strand, within Echvi_0153at 155.980 kb on + strand, within Echvi_0153at 155.980 kb on + strand, within Echvi_0153at 156.016 kb on + strandat 156.056 kb on - strandat 156.065 kb on + strandat 156.065 kb on + strandat 156.115 kb on + strandat 156.125 kb on - strandat 156.147 kb on + strandat 156.147 kb on + strandat 156.147 kb on + strandat 156.148 kb on - strandat 156.148 kb on - strandat 156.148 kb on - strandat 156.148 kb on - strandat 156.218 kb on + strandat 156.224 kb on - strandat 156.293 kb on - strand, within Echvi_0154at 156.398 kb on + strand, within Echvi_0154at 156.399 kb on - strand, within Echvi_0154at 156.399 kb on - strand, within Echvi_0154at 156.417 kb on - strand, within Echvi_0154at 156.427 kb on - strand, within Echvi_0154at 156.436 kb on + strand, within Echvi_0154at 156.436 kb on + strand, within Echvi_0154at 156.436 kb on + strand, within Echvi_0154at 156.464 kb on - strand, within Echvi_0154at 156.512 kb on + strand, within Echvi_0154at 156.516 kb on + strand, within Echvi_0154at 156.516 kb on + strand, within Echvi_0154at 156.517 kb on - strand, within Echvi_0154at 156.584 kb on - strand, within Echvi_0154at 156.635 kb on + strand, within Echvi_0154at 156.636 kb on - strand, within Echvi_0154at 156.663 kb on + strand, within Echvi_0154at 156.663 kb on + strandat 156.669 kb on - strand, within Echvi_0154at 156.669 kb on - strand, within Echvi_0154at 156.684 kb on + strand, within Echvi_0154at 156.689 kb on + strand, within Echvi_0154at 156.690 kb on - strand, within Echvi_0154at 156.984 kb on + strand, within Echvi_0154

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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154,624 + -0.0
154,624 + -0.9
154,628 - -2.4
154,632 + -0.4
154,646 + -1.7
154,667 + -0.6
154,721 + +0.0
154,722 - +0.2
154,750 + -0.4
154,813 + -0.4
154,875 + Echvi_0153 0.12 -0.3
154,876 - Echvi_0153 0.12 +0.6
154,876 - Echvi_0153 0.12 -0.3
155,197 + Echvi_0153 0.34 -0.1
155,203 + Echvi_0153 0.35 -0.1
155,222 - Echvi_0153 0.36 +0.7
155,229 + Echvi_0153 0.37 +0.6
155,446 + Echvi_0153 0.52 +0.0
155,471 + Echvi_0153 0.54 +2.1
155,471 + Echvi_0153 0.54 -1.8
155,471 + Echvi_0153 0.54 -0.3
155,471 + Echvi_0153 0.54 -0.9
155,471 + Echvi_0153 0.54 +0.3
155,471 + Echvi_0153 0.54 +0.6
155,471 + Echvi_0153 0.54 +0.6
155,472 - Echvi_0153 0.54 +0.1
155,472 - Echvi_0153 0.54 -0.1
155,473 + Echvi_0153 0.54 -1.3
155,474 - Echvi_0153 0.54 +1.2
155,475 + Echvi_0153 0.54 -0.0
155,475 + Echvi_0153 0.54 +0.7
155,475 + Echvi_0153 0.54 -1.4
155,475 + Echvi_0153 0.54 +0.5
155,475 + Echvi_0153 0.54 +0.4
155,476 - Echvi_0153 0.54 -0.2
155,525 - Echvi_0153 0.58 +0.2
155,665 + Echvi_0153 0.67 +1.0
155,683 - Echvi_0153 0.69 +1.0
155,722 + Echvi_0153 0.71 +1.2
155,726 + Echvi_0153 0.72 +1.2
155,726 + Echvi_0153 0.72 +0.2
155,726 + Echvi_0153 0.72 +1.5
155,726 + Echvi_0153 0.72 -1.7
155,727 - Echvi_0153 0.72 -0.8
155,727 - Echvi_0153 0.72 -1.1
155,769 + Echvi_0153 0.75 -0.2
155,788 + Echvi_0153 0.76 -1.2
155,789 - Echvi_0153 0.76 +2.1
155,825 + Echvi_0153 0.79 +0.1
155,946 - Echvi_0153 0.87 -0.2
155,946 - Echvi_0153 0.87 +0.5
155,959 + Echvi_0153 0.88 +1.6
155,980 + Echvi_0153 0.90 +0.6
155,980 + Echvi_0153 0.90 +0.0
155,980 + Echvi_0153 0.90 -0.2
156,016 + -0.3
156,056 - +0.4
156,065 + +0.8
156,065 + +1.6
156,115 + -0.4
156,125 - -0.7
156,147 + -0.3
156,147 + -1.6
156,147 + -0.7
156,148 - +0.6
156,148 - -0.0
156,148 - -1.0
156,148 - +2.3
156,218 + -0.3
156,224 - +0.2
156,293 - Echvi_0154 0.11 -0.5
156,398 + Echvi_0154 0.22 +1.0
156,399 - Echvi_0154 0.22 -0.2
156,399 - Echvi_0154 0.22 -0.4
156,417 - Echvi_0154 0.24 -0.4
156,427 - Echvi_0154 0.25 +0.1
156,436 + Echvi_0154 0.26 -0.5
156,436 + Echvi_0154 0.26 +1.5
156,436 + Echvi_0154 0.26 +0.9
156,464 - Echvi_0154 0.28 -1.8
156,512 + Echvi_0154 0.33 +0.1
156,516 + Echvi_0154 0.34 +0.3
156,516 + Echvi_0154 0.34 +1.6
156,517 - Echvi_0154 0.34 -1.4
156,584 - Echvi_0154 0.41 -1.0
156,635 + Echvi_0154 0.46 -0.3
156,636 - Echvi_0154 0.46 -0.2
156,663 + Echvi_0154 0.49 -0.2
156,663 + +3.6
156,669 - Echvi_0154 0.49 +0.6
156,669 - Echvi_0154 0.49 -0.7
156,684 + Echvi_0154 0.51 +0.1
156,689 + Echvi_0154 0.51 +0.5
156,690 - Echvi_0154 0.51 -0.8
156,984 + Echvi_0154 0.81 -1.2

Or see this region's nucleotide sequence