Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0135

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0133 and Echvi_0134 overlap by 106 nucleotidesEchvi_0134 and Echvi_0135 overlap by 29 nucleotidesEchvi_0135 and Echvi_0136 are separated by 6 nucleotidesEchvi_0136 and Echvi_0137 are separated by 254 nucleotides Echvi_0133: Echvi_0133 - KWG Leptospira., at 132,312 to 133,874 _0133 Echvi_0134: Echvi_0134 - hypothetical protein, at 133,769 to 134,284 _0134 Echvi_0135: Echvi_0135 - Uncharacterized protein conserved in bacteria, at 134,256 to 135,263 _0135 Echvi_0136: Echvi_0136 - Membrane-bound serine protease (ClpP class), at 135,270 to 135,728 _0136 Echvi_0137: Echvi_0137 - prolyl-tRNA synthetase, family I, at 135,983 to 137,464 _0137 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 133.560 kb on + strand, within Echvi_0133at 133.564 kb on - strand, within Echvi_0133at 133.571 kb on + strand, within Echvi_0133at 133.571 kb on + strand, within Echvi_0133at 133.571 kb on + strand, within Echvi_0133at 133.572 kb on - strand, within Echvi_0133at 133.572 kb on - strand, within Echvi_0133at 133.596 kb on + strand, within Echvi_0133at 133.596 kb on + strand, within Echvi_0133at 133.596 kb on + strand, within Echvi_0133at 133.597 kb on - strand, within Echvi_0133at 133.597 kb on - strand, within Echvi_0133at 133.638 kb on - strand, within Echvi_0133at 133.690 kb on - strand, within Echvi_0133at 133.690 kb on - strandat 133.765 kb on - strandat 133.765 kb on - strandat 133.765 kb on - strandat 133.768 kb on - strandat 133.873 kb on - strandat 133.912 kb on + strand, within Echvi_0134at 133.933 kb on + strand, within Echvi_0134at 133.933 kb on + strand, within Echvi_0134at 133.934 kb on - strand, within Echvi_0134at 133.963 kb on + strand, within Echvi_0134at 134.003 kb on - strand, within Echvi_0134at 134.003 kb on - strand, within Echvi_0134at 134.013 kb on + strand, within Echvi_0134at 134.034 kb on - strand, within Echvi_0134at 134.034 kb on - strand, within Echvi_0134at 134.034 kb on - strand, within Echvi_0134at 134.220 kb on - strand, within Echvi_0134at 134.237 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.280 kb on - strandat 134.280 kb on - strandat 134.356 kb on + strandat 134.359 kb on + strand, within Echvi_0135at 134.434 kb on - strand, within Echvi_0135at 134.514 kb on - strand, within Echvi_0135at 134.528 kb on + strand, within Echvi_0135at 134.556 kb on + strand, within Echvi_0135at 134.635 kb on - strand, within Echvi_0135at 134.635 kb on - strand, within Echvi_0135at 134.690 kb on + strand, within Echvi_0135at 134.859 kb on - strand, within Echvi_0135at 134.883 kb on + strand, within Echvi_0135at 134.883 kb on + strand, within Echvi_0135at 134.884 kb on - strand, within Echvi_0135at 134.951 kb on + strand, within Echvi_0135at 134.997 kb on + strand, within Echvi_0135at 135.087 kb on - strand, within Echvi_0135at 135.239 kb on + strandat 135.255 kb on + strandat 135.256 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.269 kb on - strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.272 kb on - strandat 135.276 kb on - strandat 135.287 kb on + strandat 135.287 kb on + strandat 135.297 kb on + strandat 135.454 kb on + strand, within Echvi_0136at 135.454 kb on + strand, within Echvi_0136at 135.455 kb on - strand, within Echvi_0136at 135.464 kb on + strand, within Echvi_0136at 135.465 kb on - strand, within Echvi_0136at 135.498 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.532 kb on - strand, within Echvi_0136at 135.533 kb on + strand, within Echvi_0136at 135.541 kb on - strand, within Echvi_0136at 135.703 kb on - strandat 135.762 kb on - strandat 135.793 kb on + strandat 135.886 kb on + strandat 135.911 kb on + strandat 135.911 kb on + strandat 135.911 kb on + strandat 135.912 kb on - strandat 135.933 kb on - strandat 135.975 kb on + strandat 135.976 kb on - strandat 135.976 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
133,560 + Echvi_0133 0.80 +0.1
133,564 - Echvi_0133 0.80 +0.3
133,571 + Echvi_0133 0.81 -0.4
133,571 + Echvi_0133 0.81 +0.1
133,571 + Echvi_0133 0.81 -0.8
133,572 - Echvi_0133 0.81 +0.1
133,572 - Echvi_0133 0.81 +0.6
133,596 + Echvi_0133 0.82 +1.1
133,596 + Echvi_0133 0.82 -0.4
133,596 + Echvi_0133 0.82 +0.7
133,597 - Echvi_0133 0.82 -0.3
133,597 - Echvi_0133 0.82 +0.2
133,638 - Echvi_0133 0.85 -0.4
133,690 - Echvi_0133 0.88 -0.5
133,690 - +2.2
133,765 - -1.3
133,765 - +0.5
133,765 - -0.6
133,768 - -2.0
133,873 - -0.6
133,912 + Echvi_0134 0.28 -0.7
133,933 + Echvi_0134 0.32 +1.4
133,933 + Echvi_0134 0.32 -0.9
133,934 - Echvi_0134 0.32 -0.1
133,963 + Echvi_0134 0.38 -0.6
134,003 - Echvi_0134 0.45 -1.8
134,003 - Echvi_0134 0.45 -0.8
134,013 + Echvi_0134 0.47 +0.1
134,034 - Echvi_0134 0.51 +0.1
134,034 - Echvi_0134 0.51 -0.6
134,034 - Echvi_0134 0.51 -0.4
134,220 - Echvi_0134 0.87 +1.0
134,237 + -0.3
134,279 + +1.0
134,279 + -0.6
134,279 + +0.4
134,279 + +0.3
134,279 + -1.7
134,280 - -0.0
134,280 - -0.2
134,356 + +1.5
134,359 + Echvi_0135 0.10 -1.4
134,434 - Echvi_0135 0.18 -0.9
134,514 - Echvi_0135 0.26 +1.1
134,528 + Echvi_0135 0.27 +0.1
134,556 + Echvi_0135 0.30 -0.2
134,635 - Echvi_0135 0.38 +1.1
134,635 - Echvi_0135 0.38 -1.4
134,690 + Echvi_0135 0.43 -0.4
134,859 - Echvi_0135 0.60 -1.5
134,883 + Echvi_0135 0.62 +0.2
134,883 + Echvi_0135 0.62 -0.4
134,884 - Echvi_0135 0.62 -1.1
134,951 + Echvi_0135 0.69 -0.0
134,997 + Echvi_0135 0.74 -0.3
135,087 - Echvi_0135 0.82 -0.9
135,239 + +0.4
135,255 + +0.1
135,256 - -0.4
135,264 - -1.5
135,264 - -1.7
135,264 - -2.0
135,267 - -0.1
135,267 - +2.4
135,267 - +0.6
135,269 - +1.4
135,271 + +0.3
135,271 + -1.1
135,271 + +0.0
135,272 - +0.6
135,276 - +0.6
135,287 + +1.3
135,287 + +0.4
135,297 + +0.4
135,454 + Echvi_0136 0.40 -0.9
135,454 + Echvi_0136 0.40 -0.6
135,455 - Echvi_0136 0.40 +1.6
135,464 + Echvi_0136 0.42 -0.8
135,465 - Echvi_0136 0.42 -0.4
135,498 + Echvi_0136 0.50 +0.3
135,531 + Echvi_0136 0.57 +0.4
135,531 + Echvi_0136 0.57 +1.2
135,531 + Echvi_0136 0.57 +0.5
135,532 - Echvi_0136 0.57 +0.2
135,533 + Echvi_0136 0.57 +1.6
135,541 - Echvi_0136 0.59 +0.7
135,703 - +0.0
135,762 - +1.1
135,793 + -0.6
135,886 + -0.1
135,911 + -0.2
135,911 + +2.6
135,911 + -0.6
135,912 - +0.3
135,933 - +2.7
135,975 + +1.0
135,976 - -0.3
135,976 - -1.0

Or see this region's nucleotide sequence