Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4389

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4387 and EX28DRAFT_4388 are separated by 150 nucleotidesEX28DRAFT_4388 and EX28DRAFT_4389 are separated by 152 nucleotidesEX28DRAFT_4389 and EX28DRAFT_4390 are separated by 174 nucleotides EX28DRAFT_4387: EX28DRAFT_4387 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 50,465 to 51,163 _4387 EX28DRAFT_4388: EX28DRAFT_4388 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 51,314 to 51,820 _4388 EX28DRAFT_4389: EX28DRAFT_4389 - cation diffusion facilitator family transporter, at 51,973 to 52,866 _4389 EX28DRAFT_4390: EX28DRAFT_4390 - 6-phosphofructokinase (EC 2.7.1.11), at 53,041 to 54,003 _4390 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.980 kb on + strand, within EX28DRAFT_4387at 50.981 kb on - strand, within EX28DRAFT_4387at 51.157 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.169 kb on - strandat 51.209 kb on - strandat 51.222 kb on - strandat 51.231 kb on + strandat 51.231 kb on + strandat 51.232 kb on - strandat 51.265 kb on + strandat 51.265 kb on + strandat 51.266 kb on - strandat 51.385 kb on + strand, within EX28DRAFT_4388at 51.408 kb on + strand, within EX28DRAFT_4388at 51.409 kb on - strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.460 kb on - strand, within EX28DRAFT_4388at 51.645 kb on + strand, within EX28DRAFT_4388at 51.645 kb on + strand, within EX28DRAFT_4388at 51.646 kb on - strand, within EX28DRAFT_4388at 51.797 kb on - strandat 51.808 kb on + strandat 51.839 kb on + strandat 51.839 kb on + strandat 51.921 kb on + strandat 51.921 kb on + strandat 51.943 kb on + strandat 51.944 kb on - strandat 51.944 kb on - strandat 51.944 kb on - strandat 51.946 kb on + strandat 51.947 kb on - strandat 51.972 kb on + strandat 51.986 kb on - strandat 52.069 kb on + strand, within EX28DRAFT_4389at 52.087 kb on - strand, within EX28DRAFT_4389at 52.233 kb on + strand, within EX28DRAFT_4389at 52.233 kb on + strand, within EX28DRAFT_4389at 52.234 kb on - strand, within EX28DRAFT_4389at 52.234 kb on - strand, within EX28DRAFT_4389at 52.234 kb on - strand, within EX28DRAFT_4389at 52.347 kb on + strand, within EX28DRAFT_4389at 52.347 kb on + strand, within EX28DRAFT_4389at 52.347 kb on + strand, within EX28DRAFT_4389at 52.348 kb on - strand, within EX28DRAFT_4389at 52.349 kb on + strand, within EX28DRAFT_4389at 52.349 kb on + strand, within EX28DRAFT_4389at 52.350 kb on - strand, within EX28DRAFT_4389at 52.350 kb on - strand, within EX28DRAFT_4389at 52.350 kb on - strand, within EX28DRAFT_4389at 52.350 kb on - strand, within EX28DRAFT_4389at 52.446 kb on + strand, within EX28DRAFT_4389at 52.461 kb on + strand, within EX28DRAFT_4389at 52.462 kb on - strand, within EX28DRAFT_4389at 52.533 kb on + strand, within EX28DRAFT_4389at 52.533 kb on + strand, within EX28DRAFT_4389at 52.537 kb on + strand, within EX28DRAFT_4389at 52.538 kb on - strand, within EX28DRAFT_4389at 52.539 kb on + strand, within EX28DRAFT_4389at 52.865 kb on - strandat 52.906 kb on + strandat 52.907 kb on - strandat 52.960 kb on + strandat 52.961 kb on - strandat 52.963 kb on + strandat 52.963 kb on + strandat 52.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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50,980 + EX28DRAFT_4387 0.74 +0.2
50,981 - EX28DRAFT_4387 0.74 +0.7
51,157 + -0.1
51,168 + -0.3
51,168 + +0.4
51,168 + +0.0
51,169 - +0.8
51,209 - +0.5
51,222 - +0.3
51,231 + +0.5
51,231 + +0.4
51,232 - -0.3
51,265 + +0.0
51,265 + -0.3
51,266 - -0.6
51,385 + EX28DRAFT_4388 0.14 -1.0
51,408 + EX28DRAFT_4388 0.19 -0.4
51,409 - EX28DRAFT_4388 0.19 -0.2
51,445 + EX28DRAFT_4388 0.26 -0.0
51,445 + EX28DRAFT_4388 0.26 +0.2
51,446 - EX28DRAFT_4388 0.26 -0.1
51,446 - EX28DRAFT_4388 0.26 -0.2
51,460 - EX28DRAFT_4388 0.29 +2.0
51,645 + EX28DRAFT_4388 0.65 +0.3
51,645 + EX28DRAFT_4388 0.65 -0.4
51,646 - EX28DRAFT_4388 0.65 -0.2
51,797 - +0.1
51,808 + +1.1
51,839 + -0.7
51,839 + -0.0
51,921 + -0.8
51,921 + -1.2
51,943 + +0.0
51,944 - -0.1
51,944 - +0.4
51,944 - -0.1
51,946 + -0.3
51,947 - -0.2
51,972 + -0.3
51,986 - -0.1
52,069 + EX28DRAFT_4389 0.11 -0.2
52,087 - EX28DRAFT_4389 0.13 -1.2
52,233 + EX28DRAFT_4389 0.29 -1.5
52,233 + EX28DRAFT_4389 0.29 +1.3
52,234 - EX28DRAFT_4389 0.29 -0.3
52,234 - EX28DRAFT_4389 0.29 -0.4
52,234 - EX28DRAFT_4389 0.29 +0.4
52,347 + EX28DRAFT_4389 0.42 -0.4
52,347 + EX28DRAFT_4389 0.42 +0.4
52,347 + EX28DRAFT_4389 0.42 -0.3
52,348 - EX28DRAFT_4389 0.42 +0.2
52,349 + EX28DRAFT_4389 0.42 +0.1
52,349 + EX28DRAFT_4389 0.42 -0.5
52,350 - EX28DRAFT_4389 0.42 +0.2
52,350 - EX28DRAFT_4389 0.42 -0.1
52,350 - EX28DRAFT_4389 0.42 -1.0
52,350 - EX28DRAFT_4389 0.42 -0.1
52,446 + EX28DRAFT_4389 0.53 +0.5
52,461 + EX28DRAFT_4389 0.55 -0.7
52,462 - EX28DRAFT_4389 0.55 -0.3
52,533 + EX28DRAFT_4389 0.63 -0.8
52,533 + EX28DRAFT_4389 0.63 -0.0
52,537 + EX28DRAFT_4389 0.63 -0.5
52,538 - EX28DRAFT_4389 0.63 +0.4
52,539 + EX28DRAFT_4389 0.63 +0.4
52,865 - -0.0
52,906 + -1.1
52,907 - -0.0
52,960 + +0.1
52,961 - -1.9
52,963 + -0.5
52,963 + +0.5
52,986 + -0.7

Or see this region's nucleotide sequence