Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4364

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4363 and EX28DRAFT_4364 are separated by 71 nucleotidesEX28DRAFT_4364 and EX28DRAFT_4365 are separated by 547 nucleotides EX28DRAFT_4363: EX28DRAFT_4363 - outer membrane autotransporter barrel domain, at 28,546 to 31,473 _4363 EX28DRAFT_4364: EX28DRAFT_4364 - hypothetical protein, at 31,545 to 32,162 _4364 EX28DRAFT_4365: EX28DRAFT_4365 - DNA-binding winged-HTH domains, at 32,710 to 33,453 _4365 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1 2 3at 30.605 kb on + strand, within EX28DRAFT_4363at 30.605 kb on + strand, within EX28DRAFT_4363at 30.605 kb on + strand, within EX28DRAFT_4363at 30.606 kb on - strand, within EX28DRAFT_4363at 30.743 kb on + strand, within EX28DRAFT_4363at 30.743 kb on + strand, within EX28DRAFT_4363at 30.743 kb on + strand, within EX28DRAFT_4363at 30.744 kb on - strand, within EX28DRAFT_4363at 30.744 kb on - strand, within EX28DRAFT_4363at 30.798 kb on + strand, within EX28DRAFT_4363at 30.799 kb on - strand, within EX28DRAFT_4363at 30.900 kb on - strand, within EX28DRAFT_4363at 30.917 kb on + strand, within EX28DRAFT_4363at 30.917 kb on + strand, within EX28DRAFT_4363at 30.918 kb on - strand, within EX28DRAFT_4363at 30.918 kb on - strand, within EX28DRAFT_4363at 30.918 kb on - strand, within EX28DRAFT_4363at 30.918 kb on - strand, within EX28DRAFT_4363at 30.921 kb on + strand, within EX28DRAFT_4363at 30.999 kb on - strand, within EX28DRAFT_4363at 31.027 kb on - strand, within EX28DRAFT_4363at 31.053 kb on + strand, within EX28DRAFT_4363at 31.054 kb on - strand, within EX28DRAFT_4363at 31.063 kb on - strand, within EX28DRAFT_4363at 31.090 kb on - strand, within EX28DRAFT_4363at 31.138 kb on + strand, within EX28DRAFT_4363at 31.246 kb on - strandat 31.246 kb on - strandat 31.249 kb on - strandat 31.271 kb on + strandat 31.272 kb on - strandat 31.276 kb on - strandat 31.715 kb on + strand, within EX28DRAFT_4364at 31.777 kb on - strand, within EX28DRAFT_4364at 31.942 kb on + strand, within EX28DRAFT_4364at 31.942 kb on + strand, within EX28DRAFT_4364at 31.943 kb on - strand, within EX28DRAFT_4364at 32.127 kb on + strandat 32.157 kb on + strandat 32.195 kb on + strandat 32.511 kb on - strandat 32.622 kb on + strandat 32.653 kb on + strandat 32.654 kb on - strandat 32.654 kb on - strandat 32.657 kb on + strandat 32.865 kb on + strand, within EX28DRAFT_4365at 32.911 kb on - strand, within EX28DRAFT_4365at 33.033 kb on - strand, within EX28DRAFT_4365at 33.080 kb on + strand, within EX28DRAFT_4365at 33.081 kb on - strand, within EX28DRAFT_4365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
30,605 + EX28DRAFT_4363 0.70 +0.2
30,605 + EX28DRAFT_4363 0.70 +0.4
30,605 + EX28DRAFT_4363 0.70 -0.1
30,606 - EX28DRAFT_4363 0.70 +0.1
30,743 + EX28DRAFT_4363 0.75 +0.3
30,743 + EX28DRAFT_4363 0.75 -0.0
30,743 + EX28DRAFT_4363 0.75 +0.1
30,744 - EX28DRAFT_4363 0.75 +0.2
30,744 - EX28DRAFT_4363 0.75 -0.3
30,798 + EX28DRAFT_4363 0.77 -0.2
30,799 - EX28DRAFT_4363 0.77 -0.2
30,900 - EX28DRAFT_4363 0.80 +0.1
30,917 + EX28DRAFT_4363 0.81 +0.2
30,917 + EX28DRAFT_4363 0.81 -0.2
30,918 - EX28DRAFT_4363 0.81 +0.8
30,918 - EX28DRAFT_4363 0.81 -0.1
30,918 - EX28DRAFT_4363 0.81 +0.1
30,918 - EX28DRAFT_4363 0.81 +0.5
30,921 + EX28DRAFT_4363 0.81 -0.0
30,999 - EX28DRAFT_4363 0.84 +0.1
31,027 - EX28DRAFT_4363 0.85 -1.6
31,053 + EX28DRAFT_4363 0.86 -0.6
31,054 - EX28DRAFT_4363 0.86 +0.0
31,063 - EX28DRAFT_4363 0.86 -0.0
31,090 - EX28DRAFT_4363 0.87 +0.8
31,138 + EX28DRAFT_4363 0.89 +0.2
31,246 - +0.6
31,246 - +0.3
31,249 - +0.4
31,271 + +0.1
31,272 - +0.0
31,276 - +0.9
31,715 + EX28DRAFT_4364 0.28 -0.1
31,777 - EX28DRAFT_4364 0.38 +0.2
31,942 + EX28DRAFT_4364 0.64 +0.1
31,942 + EX28DRAFT_4364 0.64 +0.5
31,943 - EX28DRAFT_4364 0.64 +1.2
32,127 + +0.2
32,157 + -0.1
32,195 + -0.6
32,511 - +0.9
32,622 + -0.2
32,653 + -0.7
32,654 - -0.5
32,654 - -0.2
32,657 + -0.1
32,865 + EX28DRAFT_4365 0.21 +0.1
32,911 - EX28DRAFT_4365 0.27 +0.0
33,033 - EX28DRAFT_4365 0.43 +0.5
33,080 + EX28DRAFT_4365 0.50 +2.9
33,081 - EX28DRAFT_4365 0.50 -0.6

Or see this region's nucleotide sequence