Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4322

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4320 and EX28DRAFT_4321 are separated by 50 nucleotidesEX28DRAFT_4321 and EX28DRAFT_4322 are separated by 0 nucleotidesEX28DRAFT_4322 and EX28DRAFT_4323 are separated by 197 nucleotidesEX28DRAFT_4323 and EX28DRAFT_4324 are separated by 6 nucleotidesEX28DRAFT_4324 and EX28DRAFT_4325 overlap by 4 nucleotides EX28DRAFT_4320: EX28DRAFT_4320 - Sodium Bile acid symporter family, at 125,642 to 126,313 _4320 EX28DRAFT_4321: EX28DRAFT_4321 - YjbD family (DUF3811), at 126,364 to 126,636 _4321 EX28DRAFT_4322: EX28DRAFT_4322 - pseudouridine synthase, at 126,637 to 127,509 _4322 EX28DRAFT_4323: EX28DRAFT_4323 - putative addiction module killer protein, at 127,707 to 128,009 _4323 EX28DRAFT_4324: EX28DRAFT_4324 - probable addiction module antidote protein, at 128,016 to 128,303 _4324 EX28DRAFT_4325: EX28DRAFT_4325 - Na/Pi-cotransporter, at 128,300 to 129,931 _4325 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 125.702 kb on + strandat 125.706 kb on - strandat 125.856 kb on - strand, within EX28DRAFT_4320at 125.856 kb on - strand, within EX28DRAFT_4320at 126.046 kb on + strand, within EX28DRAFT_4320at 126.046 kb on + strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.053 kb on - strand, within EX28DRAFT_4320at 126.053 kb on - strand, within EX28DRAFT_4320at 126.106 kb on + strand, within EX28DRAFT_4320at 126.107 kb on - strand, within EX28DRAFT_4320at 126.132 kb on + strand, within EX28DRAFT_4320at 126.169 kb on + strand, within EX28DRAFT_4320at 126.255 kb on - strandat 126.311 kb on + strandat 126.499 kb on + strand, within EX28DRAFT_4321at 126.500 kb on - strand, within EX28DRAFT_4321at 126.508 kb on - strand, within EX28DRAFT_4321at 126.571 kb on + strand, within EX28DRAFT_4321at 126.571 kb on + strand, within EX28DRAFT_4321at 126.572 kb on - strand, within EX28DRAFT_4321at 126.885 kb on + strand, within EX28DRAFT_4322at 126.886 kb on - strand, within EX28DRAFT_4322at 127.100 kb on + strand, within EX28DRAFT_4322at 127.100 kb on + strand, within EX28DRAFT_4322at 127.101 kb on - strand, within EX28DRAFT_4322at 127.101 kb on - strand, within EX28DRAFT_4322at 127.212 kb on + strand, within EX28DRAFT_4322at 127.212 kb on + strand, within EX28DRAFT_4322at 127.213 kb on - strand, within EX28DRAFT_4322at 127.354 kb on - strand, within EX28DRAFT_4322at 127.475 kb on + strandat 127.475 kb on + strandat 127.475 kb on + strandat 127.476 kb on - strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.509 kb on + strandat 127.510 kb on - strandat 127.510 kb on - strandat 127.511 kb on - strandat 127.533 kb on + strandat 127.533 kb on + strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.534 kb on - strandat 127.535 kb on + strandat 127.536 kb on - strandat 127.536 kb on - strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.540 kb on + strandat 127.564 kb on + strandat 127.632 kb on + strandat 127.643 kb on + strandat 127.653 kb on + strandat 127.706 kb on + strandat 127.707 kb on - strandat 127.718 kb on - strandat 127.718 kb on - strandat 127.830 kb on - strand, within EX28DRAFT_4323at 127.848 kb on - strand, within EX28DRAFT_4323at 127.849 kb on + strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.850 kb on - strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.963 kb on + strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.964 kb on - strand, within EX28DRAFT_4323at 127.967 kb on + strand, within EX28DRAFT_4323at 128.035 kb on - strandat 128.035 kb on - strandat 128.115 kb on + strand, within EX28DRAFT_4324at 128.238 kb on - strand, within EX28DRAFT_4324at 128.304 kb on + strandat 128.304 kb on + strandat 128.305 kb on - strandat 128.305 kb on - strandat 128.349 kb on + strandat 128.396 kb on + strandat 128.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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125,702 + -0.0
125,706 - -0.1
125,856 - EX28DRAFT_4320 0.32 -0.9
125,856 - EX28DRAFT_4320 0.32 -0.2
126,046 + EX28DRAFT_4320 0.60 +0.4
126,046 + EX28DRAFT_4320 0.60 -0.2
126,047 - EX28DRAFT_4320 0.60 -0.3
126,047 - EX28DRAFT_4320 0.60 +0.0
126,047 - EX28DRAFT_4320 0.60 -0.1
126,047 - EX28DRAFT_4320 0.60 +1.2
126,053 - EX28DRAFT_4320 0.61 +1.2
126,053 - EX28DRAFT_4320 0.61 +0.4
126,106 + EX28DRAFT_4320 0.69 +0.3
126,107 - EX28DRAFT_4320 0.69 +0.6
126,132 + EX28DRAFT_4320 0.73 -1.9
126,169 + EX28DRAFT_4320 0.78 +0.0
126,255 - -0.4
126,311 + +0.7
126,499 + EX28DRAFT_4321 0.49 +0.1
126,500 - EX28DRAFT_4321 0.50 +0.0
126,508 - EX28DRAFT_4321 0.53 -0.0
126,571 + EX28DRAFT_4321 0.76 -0.2
126,571 + EX28DRAFT_4321 0.76 +0.1
126,572 - EX28DRAFT_4321 0.76 -0.0
126,885 + EX28DRAFT_4322 0.28 -0.1
126,886 - EX28DRAFT_4322 0.29 +0.1
127,100 + EX28DRAFT_4322 0.53 +2.8
127,100 + EX28DRAFT_4322 0.53 -0.7
127,101 - EX28DRAFT_4322 0.53 +0.1
127,101 - EX28DRAFT_4322 0.53 +0.1
127,212 + EX28DRAFT_4322 0.66 -0.0
127,212 + EX28DRAFT_4322 0.66 +0.1
127,213 - EX28DRAFT_4322 0.66 +0.5
127,354 - EX28DRAFT_4322 0.82 +0.7
127,475 + +0.1
127,475 + -0.3
127,475 + -1.3
127,476 - +0.5
127,509 + +0.6
127,509 + -0.2
127,509 + +0.0
127,509 + +0.3
127,509 + -3.4
127,510 - +0.1
127,510 - -0.3
127,511 - -0.1
127,533 + -0.3
127,533 + -0.4
127,534 - -0.0
127,534 - +0.6
127,534 - -1.3
127,535 + -0.1
127,536 - -0.0
127,536 - +0.4
127,540 + -0.0
127,540 + +1.0
127,540 + +0.5
127,564 + -0.2
127,632 + -0.9
127,643 + -0.5
127,653 + +0.2
127,706 + -0.5
127,707 - +0.7
127,718 - +0.6
127,718 - +0.0
127,830 - EX28DRAFT_4323 0.41 +0.2
127,848 - EX28DRAFT_4323 0.47 -2.0
127,849 + EX28DRAFT_4323 0.47 -1.1
127,850 - EX28DRAFT_4323 0.47 -0.6
127,850 - EX28DRAFT_4323 0.47 -0.5
127,850 - EX28DRAFT_4323 0.47 +0.1
127,850 - EX28DRAFT_4323 0.47 +0.2
127,850 - EX28DRAFT_4323 0.47 +0.2
127,850 - EX28DRAFT_4323 0.47 +0.6
127,850 - EX28DRAFT_4323 0.47 -0.8
127,963 + EX28DRAFT_4323 0.84 -0.1
127,963 + EX28DRAFT_4323 0.84 +0.5
127,963 + EX28DRAFT_4323 0.84 -0.3
127,963 + EX28DRAFT_4323 0.84 +0.2
127,963 + EX28DRAFT_4323 0.84 +0.8
127,963 + EX28DRAFT_4323 0.84 -0.7
127,964 - EX28DRAFT_4323 0.85 -0.3
127,964 - EX28DRAFT_4323 0.85 +0.1
127,964 - EX28DRAFT_4323 0.85 -0.3
127,964 - EX28DRAFT_4323 0.85 +1.0
127,964 - EX28DRAFT_4323 0.85 +0.9
127,964 - EX28DRAFT_4323 0.85 +0.0
127,964 - EX28DRAFT_4323 0.85 +0.2
127,964 - EX28DRAFT_4323 0.85 +1.2
127,967 + EX28DRAFT_4323 0.86 -0.1
128,035 - -0.2
128,035 - -1.5
128,115 + EX28DRAFT_4324 0.34 +0.2
128,238 - EX28DRAFT_4324 0.77 +1.6
128,304 + +0.8
128,304 + -0.2
128,305 - -0.2
128,305 - +0.3
128,349 + -0.5
128,396 + -0.0
128,426 - -0.6

Or see this region's nucleotide sequence