Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4319

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4318 and EX28DRAFT_4319 are separated by 374 nucleotidesEX28DRAFT_4319 and EX28DRAFT_4320 are separated by 93 nucleotidesEX28DRAFT_4320 and EX28DRAFT_4321 are separated by 50 nucleotides EX28DRAFT_4318: EX28DRAFT_4318 - Glucose-6-phosphate isomerase, at 122,175 to 123,824 _4318 EX28DRAFT_4319: EX28DRAFT_4319 - aspartate kinase (EC 2.7.2.4), at 124,199 to 125,548 _4319 EX28DRAFT_4320: EX28DRAFT_4320 - Sodium Bile acid symporter family, at 125,642 to 126,313 _4320 EX28DRAFT_4321: EX28DRAFT_4321 - YjbD family (DUF3811), at 126,364 to 126,636 _4321 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 123.832 kb on - strandat 123.901 kb on + strandat 123.902 kb on - strandat 123.952 kb on - strandat 123.953 kb on + strandat 124.004 kb on - strandat 124.016 kb on - strandat 124.033 kb on + strandat 124.034 kb on - strandat 124.034 kb on - strandat 124.034 kb on - strandat 124.115 kb on - strandat 124.117 kb on - strandat 124.248 kb on - strandat 124.480 kb on + strand, within EX28DRAFT_4319at 124.628 kb on - strand, within EX28DRAFT_4319at 124.805 kb on + strand, within EX28DRAFT_4319at 125.149 kb on + strand, within EX28DRAFT_4319at 125.149 kb on + strand, within EX28DRAFT_4319at 125.149 kb on + strand, within EX28DRAFT_4319at 125.206 kb on + strand, within EX28DRAFT_4319at 125.471 kb on + strandat 125.571 kb on + strandat 125.571 kb on + strandat 125.571 kb on + strandat 125.575 kb on + strandat 125.575 kb on + strandat 125.575 kb on + strandat 125.576 kb on - strandat 125.578 kb on - strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.610 kb on - strandat 125.624 kb on + strandat 125.702 kb on + strandat 125.706 kb on - strandat 125.856 kb on - strand, within EX28DRAFT_4320at 125.856 kb on - strand, within EX28DRAFT_4320at 126.046 kb on + strand, within EX28DRAFT_4320at 126.046 kb on + strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.047 kb on - strand, within EX28DRAFT_4320at 126.053 kb on - strand, within EX28DRAFT_4320at 126.053 kb on - strand, within EX28DRAFT_4320at 126.106 kb on + strand, within EX28DRAFT_4320at 126.107 kb on - strand, within EX28DRAFT_4320at 126.132 kb on + strand, within EX28DRAFT_4320at 126.169 kb on + strand, within EX28DRAFT_4320at 126.255 kb on - strandat 126.311 kb on + strandat 126.499 kb on + strand, within EX28DRAFT_4321at 126.500 kb on - strand, within EX28DRAFT_4321at 126.508 kb on - strand, within EX28DRAFT_4321

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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123,832 - +0.6
123,901 + +0.2
123,902 - +0.3
123,952 - +0.3
123,953 + -0.4
124,004 - -0.0
124,016 - +0.8
124,033 + +0.2
124,034 - -0.2
124,034 - +0.3
124,034 - +0.6
124,115 - +0.0
124,117 - -0.8
124,248 - -0.2
124,480 + EX28DRAFT_4319 0.21 -2.2
124,628 - EX28DRAFT_4319 0.32 -0.4
124,805 + EX28DRAFT_4319 0.45 -0.4
125,149 + EX28DRAFT_4319 0.70 -1.7
125,149 + EX28DRAFT_4319 0.70 +0.2
125,149 + EX28DRAFT_4319 0.70 -0.5
125,206 + EX28DRAFT_4319 0.75 -0.4
125,471 + -0.4
125,571 + +0.1
125,571 + -0.8
125,571 + -0.2
125,575 + -0.4
125,575 + -0.0
125,575 + +0.0
125,576 - +0.2
125,578 - -0.5
125,609 + -0.2
125,609 + -0.3
125,609 + +0.4
125,609 + -0.0
125,609 + -0.0
125,609 + +0.3
125,610 - -0.3
125,624 + -0.4
125,702 + -0.0
125,706 - -0.1
125,856 - EX28DRAFT_4320 0.32 -0.9
125,856 - EX28DRAFT_4320 0.32 -0.2
126,046 + EX28DRAFT_4320 0.60 +0.4
126,046 + EX28DRAFT_4320 0.60 -0.2
126,047 - EX28DRAFT_4320 0.60 -0.3
126,047 - EX28DRAFT_4320 0.60 +0.0
126,047 - EX28DRAFT_4320 0.60 -0.1
126,047 - EX28DRAFT_4320 0.60 +1.2
126,053 - EX28DRAFT_4320 0.61 +1.2
126,053 - EX28DRAFT_4320 0.61 +0.4
126,106 + EX28DRAFT_4320 0.69 +0.3
126,107 - EX28DRAFT_4320 0.69 +0.6
126,132 + EX28DRAFT_4320 0.73 -1.9
126,169 + EX28DRAFT_4320 0.78 +0.0
126,255 - -0.4
126,311 + +0.7
126,499 + EX28DRAFT_4321 0.49 +0.1
126,500 - EX28DRAFT_4321 0.50 +0.0
126,508 - EX28DRAFT_4321 0.53 -0.0

Or see this region's nucleotide sequence