Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4311

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4310 and EX28DRAFT_4311 are separated by 14 nucleotidesEX28DRAFT_4311 and EX28DRAFT_4312 are separated by 97 nucleotidesEX28DRAFT_4312 and EX28DRAFT_4313 are separated by 96 nucleotides EX28DRAFT_4310: EX28DRAFT_4310 - ABC-type sugar transport systems, permease components, at 114,449 to 115,993 _4310 EX28DRAFT_4311: EX28DRAFT_4311 - ABC-type maltose transport systems, permease component, at 116,008 to 116,898 _4311 EX28DRAFT_4312: EX28DRAFT_4312 - Predicted membrane protein, at 116,996 to 117,406 _4312 EX28DRAFT_4313: EX28DRAFT_4313 - Bacterial transferase hexapeptide (six repeats)/Hexapeptide repeat of succinyl-transferase, at 117,503 to 117,955 _4313 Position (kb) 116 117Strain fitness (log2 ratio) -2 -1 0 1 2at 115.079 kb on + strand, within EX28DRAFT_4310at 115.079 kb on + strand, within EX28DRAFT_4310at 115.080 kb on - strand, within EX28DRAFT_4310at 115.080 kb on - strand, within EX28DRAFT_4310at 115.080 kb on - strand, within EX28DRAFT_4310at 115.082 kb on - strand, within EX28DRAFT_4310at 115.131 kb on - strand, within EX28DRAFT_4310at 115.565 kb on - strand, within EX28DRAFT_4310at 115.565 kb on - strand, within EX28DRAFT_4310at 115.595 kb on + strand, within EX28DRAFT_4310at 115.595 kb on + strand, within EX28DRAFT_4310at 115.596 kb on - strand, within EX28DRAFT_4310at 115.596 kb on - strand, within EX28DRAFT_4310at 115.596 kb on - strand, within EX28DRAFT_4310at 115.646 kb on + strand, within EX28DRAFT_4310at 115.718 kb on - strand, within EX28DRAFT_4310at 115.856 kb on + strandat 115.857 kb on - strandat 115.978 kb on + strandat 115.979 kb on - strandat 116.019 kb on - strandat 116.019 kb on - strandat 116.019 kb on - strandat 116.019 kb on - strandat 116.060 kb on + strandat 116.061 kb on - strandat 116.061 kb on - strandat 116.428 kb on + strand, within EX28DRAFT_4311at 116.428 kb on + strand, within EX28DRAFT_4311at 116.428 kb on + strand, within EX28DRAFT_4311at 116.428 kb on + strand, within EX28DRAFT_4311at 116.428 kb on + strand, within EX28DRAFT_4311at 116.429 kb on - strand, within EX28DRAFT_4311at 116.460 kb on - strand, within EX28DRAFT_4311at 116.528 kb on + strand, within EX28DRAFT_4311at 116.529 kb on - strand, within EX28DRAFT_4311at 116.529 kb on - strand, within EX28DRAFT_4311at 116.529 kb on - strand, within EX28DRAFT_4311at 116.660 kb on + strand, within EX28DRAFT_4311at 116.665 kb on - strand, within EX28DRAFT_4311at 116.665 kb on - strand, within EX28DRAFT_4311at 116.665 kb on - strand, within EX28DRAFT_4311at 116.714 kb on + strand, within EX28DRAFT_4311at 116.715 kb on - strand, within EX28DRAFT_4311at 116.734 kb on + strand, within EX28DRAFT_4311at 116.734 kb on + strand, within EX28DRAFT_4311at 116.747 kb on + strand, within EX28DRAFT_4311at 116.751 kb on + strand, within EX28DRAFT_4311at 116.751 kb on + strand, within EX28DRAFT_4311at 116.752 kb on - strand, within EX28DRAFT_4311at 116.761 kb on + strand, within EX28DRAFT_4311at 116.762 kb on - strand, within EX28DRAFT_4311at 116.896 kb on + strandat 116.935 kb on - strandat 116.940 kb on + strandat 116.940 kb on + strandat 116.940 kb on + strandat 116.940 kb on + strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 116.945 kb on + strandat 116.945 kb on + strandat 117.066 kb on + strand, within EX28DRAFT_4312at 117.067 kb on - strand, within EX28DRAFT_4312at 117.135 kb on + strand, within EX28DRAFT_4312at 117.145 kb on - strand, within EX28DRAFT_4312at 117.145 kb on - strand, within EX28DRAFT_4312at 117.177 kb on + strand, within EX28DRAFT_4312at 117.207 kb on + strand, within EX28DRAFT_4312at 117.243 kb on + strand, within EX28DRAFT_4312at 117.243 kb on + strand, within EX28DRAFT_4312at 117.244 kb on - strand, within EX28DRAFT_4312at 117.273 kb on - strand, within EX28DRAFT_4312at 117.373 kb on + strandat 117.406 kb on + strandat 117.407 kb on - strandat 117.407 kb on - strandat 117.407 kb on - strandat 117.439 kb on + strandat 117.439 kb on + strandat 117.440 kb on - strandat 117.478 kb on + strandat 117.478 kb on + strandat 117.479 kb on - strandat 117.479 kb on - strandat 117.486 kb on - strandat 117.486 kb on - strandat 117.489 kb on + strandat 117.489 kb on + strandat 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.561 kb on - strand, within EX28DRAFT_4313at 117.561 kb on - strand, within EX28DRAFT_4313at 117.579 kb on - strand, within EX28DRAFT_4313at 117.603 kb on + strand, within EX28DRAFT_4313at 117.690 kb on - strand, within EX28DRAFT_4313at 117.690 kb on - strand, within EX28DRAFT_4313at 117.697 kb on + strand, within EX28DRAFT_4313at 117.698 kb on - strand, within EX28DRAFT_4313at 117.704 kb on - strand, within EX28DRAFT_4313at 117.745 kb on + strand, within EX28DRAFT_4313at 117.745 kb on + strand, within EX28DRAFT_4313at 117.746 kb on - strand, within EX28DRAFT_4313at 117.794 kb on - strand, within EX28DRAFT_4313

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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115,079 + EX28DRAFT_4310 0.41 +0.1
115,079 + EX28DRAFT_4310 0.41 +1.0
115,080 - EX28DRAFT_4310 0.41 -0.1
115,080 - EX28DRAFT_4310 0.41 +0.5
115,080 - EX28DRAFT_4310 0.41 +0.2
115,082 - EX28DRAFT_4310 0.41 -0.4
115,131 - EX28DRAFT_4310 0.44 -0.8
115,565 - EX28DRAFT_4310 0.72 -0.1
115,565 - EX28DRAFT_4310 0.72 -0.2
115,595 + EX28DRAFT_4310 0.74 -0.2
115,595 + EX28DRAFT_4310 0.74 -0.3
115,596 - EX28DRAFT_4310 0.74 +1.0
115,596 - EX28DRAFT_4310 0.74 +0.2
115,596 - EX28DRAFT_4310 0.74 +0.3
115,646 + EX28DRAFT_4310 0.77 -0.1
115,718 - EX28DRAFT_4310 0.82 -1.4
115,856 + +0.1
115,857 - -0.1
115,978 + +0.1
115,979 - +0.6
116,019 - +0.1
116,019 - +0.6
116,019 - +0.1
116,019 - +0.1
116,060 + -0.6
116,061 - +0.2
116,061 - +0.3
116,428 + EX28DRAFT_4311 0.47 +0.3
116,428 + EX28DRAFT_4311 0.47 +0.2
116,428 + EX28DRAFT_4311 0.47 +0.3
116,428 + EX28DRAFT_4311 0.47 +0.1
116,428 + EX28DRAFT_4311 0.47 +0.3
116,429 - EX28DRAFT_4311 0.47 +0.4
116,460 - EX28DRAFT_4311 0.51 +1.0
116,528 + EX28DRAFT_4311 0.58 +0.3
116,529 - EX28DRAFT_4311 0.58 +0.9
116,529 - EX28DRAFT_4311 0.58 -1.5
116,529 - EX28DRAFT_4311 0.58 -0.0
116,660 + EX28DRAFT_4311 0.73 +0.1
116,665 - EX28DRAFT_4311 0.74 -0.5
116,665 - EX28DRAFT_4311 0.74 +0.6
116,665 - EX28DRAFT_4311 0.74 -0.3
116,714 + EX28DRAFT_4311 0.79 -0.4
116,715 - EX28DRAFT_4311 0.79 -0.3
116,734 + EX28DRAFT_4311 0.81 -0.4
116,734 + EX28DRAFT_4311 0.81 +0.3
116,747 + EX28DRAFT_4311 0.83 -0.2
116,751 + EX28DRAFT_4311 0.83 +0.0
116,751 + EX28DRAFT_4311 0.83 +0.5
116,752 - EX28DRAFT_4311 0.84 +0.2
116,761 + EX28DRAFT_4311 0.85 -0.2
116,762 - EX28DRAFT_4311 0.85 +0.5
116,896 + -0.2
116,935 - +0.3
116,940 + +0.0
116,940 + -0.6
116,940 + -0.5
116,940 + +0.6
116,941 - -0.1
116,941 - -0.0
116,941 - -0.3
116,941 - -0.8
116,941 - -0.1
116,945 + +0.5
116,945 + +1.0
117,066 + EX28DRAFT_4312 0.17 +0.6
117,067 - EX28DRAFT_4312 0.17 +0.3
117,135 + EX28DRAFT_4312 0.34 +1.0
117,145 - EX28DRAFT_4312 0.36 +0.5
117,145 - EX28DRAFT_4312 0.36 +0.3
117,177 + EX28DRAFT_4312 0.44 -0.6
117,207 + EX28DRAFT_4312 0.51 -0.3
117,243 + EX28DRAFT_4312 0.60 +0.5
117,243 + EX28DRAFT_4312 0.60 +0.2
117,244 - EX28DRAFT_4312 0.60 +0.4
117,273 - EX28DRAFT_4312 0.67 -0.2
117,373 + +0.6
117,406 + -0.9
117,407 - +0.2
117,407 - +0.3
117,407 - -0.7
117,439 + +0.6
117,439 + +0.5
117,440 - -0.8
117,478 + -0.6
117,478 + -0.3
117,479 - +0.1
117,479 - -1.0
117,486 - -0.0
117,486 - +0.8
117,489 + -0.0
117,489 + -0.1
117,558 + EX28DRAFT_4313 0.12 -0.5
117,558 + EX28DRAFT_4313 0.12 -0.3
117,558 + EX28DRAFT_4313 0.12 +0.4
117,558 + EX28DRAFT_4313 0.12 -0.4
117,558 + EX28DRAFT_4313 0.12 +0.1
117,559 - EX28DRAFT_4313 0.12 -1.8
117,559 - EX28DRAFT_4313 0.12 +0.8
117,559 - EX28DRAFT_4313 0.12 -0.0
117,560 + EX28DRAFT_4313 0.13 -0.8
117,560 + EX28DRAFT_4313 0.13 -0.8
117,560 + EX28DRAFT_4313 0.13 +0.0
117,561 - EX28DRAFT_4313 0.13 -0.3
117,561 - EX28DRAFT_4313 0.13 +2.3
117,579 - EX28DRAFT_4313 0.17 -0.2
117,603 + EX28DRAFT_4313 0.22 -1.0
117,690 - EX28DRAFT_4313 0.41 -0.3
117,690 - EX28DRAFT_4313 0.41 +0.3
117,697 + EX28DRAFT_4313 0.43 -0.2
117,698 - EX28DRAFT_4313 0.43 -0.0
117,704 - EX28DRAFT_4313 0.44 +2.2
117,745 + EX28DRAFT_4313 0.53 -0.1
117,745 + EX28DRAFT_4313 0.53 -0.4
117,746 - EX28DRAFT_4313 0.54 +0.3
117,794 - EX28DRAFT_4313 0.64 -0.2

Or see this region's nucleotide sequence