Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4218

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4217 and EX28DRAFT_4218 are separated by 32 nucleotidesEX28DRAFT_4218 and EX28DRAFT_4219 are separated by 49 nucleotidesEX28DRAFT_4219 and EX28DRAFT_4220 are separated by 10 nucleotides EX28DRAFT_4217: EX28DRAFT_4217 - Predicted ABC-type sugar transport system, permease component, at 24,321 to 25,316 _4217 EX28DRAFT_4218: EX28DRAFT_4218 - ABC-type sugar transport system, periplasmic component, at 25,349 to 26,290 _4218 EX28DRAFT_4219: EX28DRAFT_4219 - ABC-type sugar transport system, auxiliary component, at 26,340 to 27,026 _4219 EX28DRAFT_4220: EX28DRAFT_4220 - ketose-bisphosphate aldolase, at 27,037 to 27,897 _4220 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1 2at 24.744 kb on + strand, within EX28DRAFT_4217at 24.744 kb on + strand, within EX28DRAFT_4217at 24.745 kb on - strand, within EX28DRAFT_4217at 24.768 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.834 kb on + strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.975 kb on - strand, within EX28DRAFT_4217at 25.003 kb on - strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.008 kb on - strand, within EX28DRAFT_4217at 25.227 kb on + strandat 25.267 kb on + strandat 25.287 kb on + strandat 25.288 kb on - strandat 25.314 kb on + strandat 25.314 kb on + strandat 25.315 kb on - strandat 25.329 kb on - strandat 25.343 kb on + strandat 25.343 kb on + strandat 25.345 kb on - strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.347 kb on - strandat 25.347 kb on - strandat 25.347 kb on - strandat 25.348 kb on + strandat 25.348 kb on + strandat 25.348 kb on + strandat 25.349 kb on - strandat 25.768 kb on + strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.772 kb on + strand, within EX28DRAFT_4218at 25.772 kb on + strand, within EX28DRAFT_4218at 25.773 kb on - strand, within EX28DRAFT_4218at 25.773 kb on - strand, within EX28DRAFT_4218at 25.949 kb on - strand, within EX28DRAFT_4218at 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.268 kb on - strandat 26.268 kb on - strandat 26.268 kb on - strandat 26.710 kb on + strand, within EX28DRAFT_4219at 26.710 kb on + strand, within EX28DRAFT_4219at 26.710 kb on + strand, within EX28DRAFT_4219at 26.956 kb on - strand, within EX28DRAFT_4219at 26.957 kb on + strand, within EX28DRAFT_4219at 26.957 kb on + strand, within EX28DRAFT_4219at 26.957 kb on + strand, within EX28DRAFT_4219at 27.007 kb on - strandat 27.007 kb on - strandat 27.024 kb on + strandat 27.025 kb on - strandat 27.025 kb on - strandat 27.025 kb on - strandat 27.032 kb on - strandat 27.032 kb on - strandat 27.198 kb on + strand, within EX28DRAFT_4220at 27.199 kb on - strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.203 kb on - strand, within EX28DRAFT_4220

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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24,744 + EX28DRAFT_4217 0.42 -0.6
24,744 + EX28DRAFT_4217 0.42 +0.3
24,745 - EX28DRAFT_4217 0.43 -0.3
24,768 + EX28DRAFT_4217 0.45 +0.2
24,797 + EX28DRAFT_4217 0.48 +0.1
24,797 + EX28DRAFT_4217 0.48 -1.2
24,834 + EX28DRAFT_4217 0.52 -0.9
24,835 - EX28DRAFT_4217 0.52 +0.3
24,835 - EX28DRAFT_4217 0.52 -0.5
24,835 - EX28DRAFT_4217 0.52 +0.1
24,930 + EX28DRAFT_4217 0.61 -0.6
24,930 + EX28DRAFT_4217 0.61 -0.3
24,931 - EX28DRAFT_4217 0.61 -0.2
24,931 - EX28DRAFT_4217 0.61 +0.4
24,975 - EX28DRAFT_4217 0.66 +0.4
25,003 - EX28DRAFT_4217 0.68 -0.2
25,007 + EX28DRAFT_4217 0.69 -0.2
25,007 + EX28DRAFT_4217 0.69 +0.2
25,007 + EX28DRAFT_4217 0.69 -0.5
25,008 - EX28DRAFT_4217 0.69 +0.7
25,227 + -0.8
25,267 + +0.8
25,287 + +0.3
25,288 - +0.3
25,314 + -0.0
25,314 + -0.1
25,315 - +0.9
25,329 - -0.4
25,343 + -0.1
25,343 + +1.9
25,345 - -0.7
25,346 + -0.6
25,346 + +0.1
25,346 + +0.2
25,346 + +0.1
25,346 + +0.9
25,347 - +0.1
25,347 - -1.3
25,347 - -0.0
25,348 + -1.7
25,348 + +0.0
25,348 + -0.5
25,349 - +0.1
25,768 + EX28DRAFT_4218 0.44 -0.2
25,769 - EX28DRAFT_4218 0.45 +0.3
25,769 - EX28DRAFT_4218 0.45 +0.2
25,769 - EX28DRAFT_4218 0.45 +0.6
25,769 - EX28DRAFT_4218 0.45 +0.1
25,772 + EX28DRAFT_4218 0.45 +0.2
25,772 + EX28DRAFT_4218 0.45 -0.6
25,773 - EX28DRAFT_4218 0.45 +0.4
25,773 - EX28DRAFT_4218 0.45 +0.2
25,949 - EX28DRAFT_4218 0.64 +0.3
26,267 + +0.2
26,267 + +0.3
26,267 + +0.9
26,267 + -0.2
26,267 + +0.4
26,268 - -0.1
26,268 - +0.5
26,268 - +0.2
26,710 + EX28DRAFT_4219 0.54 +0.4
26,710 + EX28DRAFT_4219 0.54 -0.2
26,710 + EX28DRAFT_4219 0.54 +0.0
26,956 - EX28DRAFT_4219 0.90 +0.1
26,957 + EX28DRAFT_4219 0.90 -0.5
26,957 + EX28DRAFT_4219 0.90 -0.1
26,957 + EX28DRAFT_4219 0.90 +0.5
27,007 - +1.3
27,007 - -0.5
27,024 + -0.1
27,025 - +0.3
27,025 - +0.1
27,025 - -0.2
27,032 - +0.8
27,032 - -0.7
27,198 + EX28DRAFT_4220 0.19 +0.3
27,199 - EX28DRAFT_4220 0.19 +0.6
27,202 + EX28DRAFT_4220 0.19 +0.6
27,202 + EX28DRAFT_4220 0.19 +0.1
27,202 + EX28DRAFT_4220 0.19 -0.0
27,202 + EX28DRAFT_4220 0.19 -0.5
27,203 - EX28DRAFT_4220 0.19 -0.1

Or see this region's nucleotide sequence