Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4216

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4215 and EX28DRAFT_4216 are separated by 193 nucleotidesEX28DRAFT_4216 and EX28DRAFT_4217 overlap by 4 nucleotides EX28DRAFT_4215: EX28DRAFT_4215 - Response regulator receiver domain/HAMP domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 20,328 to 22,610 _4215 EX28DRAFT_4216: EX28DRAFT_4216 - ABC-type sugar transport system, ATPase component, at 22,804 to 24,324 _4216 EX28DRAFT_4217: EX28DRAFT_4217 - Predicted ABC-type sugar transport system, permease component, at 24,321 to 25,316 _4217 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -1 0 1at 21.806 kb on - strand, within EX28DRAFT_4215at 21.806 kb on - strand, within EX28DRAFT_4215at 21.806 kb on - strand, within EX28DRAFT_4215at 21.812 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.859 kb on + strand, within EX28DRAFT_4215at 21.859 kb on + strand, within EX28DRAFT_4215at 21.860 kb on - strand, within EX28DRAFT_4215at 21.964 kb on - strand, within EX28DRAFT_4215at 22.132 kb on + strand, within EX28DRAFT_4215at 22.133 kb on - strand, within EX28DRAFT_4215at 22.357 kb on + strand, within EX28DRAFT_4215at 22.554 kb on - strandat 22.617 kb on - strandat 22.682 kb on - strandat 22.690 kb on - strandat 22.700 kb on + strandat 22.700 kb on + strandat 22.705 kb on + strandat 22.705 kb on + strandat 22.706 kb on - strandat 22.706 kb on - strandat 22.710 kb on - strandat 22.716 kb on - strandat 22.720 kb on - strandat 22.720 kb on - strandat 22.720 kb on - strandat 22.823 kb on + strandat 22.824 kb on - strandat 22.969 kb on + strand, within EX28DRAFT_4216at 22.969 kb on + strand, within EX28DRAFT_4216at 22.970 kb on - strand, within EX28DRAFT_4216at 23.107 kb on - strand, within EX28DRAFT_4216at 23.107 kb on - strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.394 kb on + strand, within EX28DRAFT_4216at 23.419 kb on + strand, within EX28DRAFT_4216at 23.419 kb on + strand, within EX28DRAFT_4216at 23.462 kb on - strand, within EX28DRAFT_4216at 23.462 kb on - strand, within EX28DRAFT_4216at 23.489 kb on + strand, within EX28DRAFT_4216at 23.906 kb on + strand, within EX28DRAFT_4216at 24.155 kb on + strand, within EX28DRAFT_4216at 24.206 kb on - strandat 24.226 kb on - strandat 24.226 kb on - strandat 24.744 kb on + strand, within EX28DRAFT_4217at 24.744 kb on + strand, within EX28DRAFT_4217at 24.745 kb on - strand, within EX28DRAFT_4217at 24.768 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.834 kb on + strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.975 kb on - strand, within EX28DRAFT_4217at 25.003 kb on - strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.008 kb on - strand, within EX28DRAFT_4217at 25.227 kb on + strandat 25.267 kb on + strandat 25.287 kb on + strandat 25.288 kb on - strandat 25.314 kb on + strandat 25.314 kb on + strandat 25.315 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
21,806 - EX28DRAFT_4215 0.65 -0.5
21,806 - EX28DRAFT_4215 0.65 -0.4
21,806 - EX28DRAFT_4215 0.65 +0.1
21,812 + EX28DRAFT_4215 0.65 +0.1
21,857 + EX28DRAFT_4215 0.67 -0.1
21,857 + EX28DRAFT_4215 0.67 -0.3
21,857 + EX28DRAFT_4215 0.67 +0.0
21,857 + EX28DRAFT_4215 0.67 -0.4
21,857 + EX28DRAFT_4215 0.67 +0.5
21,858 - EX28DRAFT_4215 0.67 +0.3
21,858 - EX28DRAFT_4215 0.67 +0.4
21,858 - EX28DRAFT_4215 0.67 +0.0
21,858 - EX28DRAFT_4215 0.67 -0.5
21,858 - EX28DRAFT_4215 0.67 -0.2
21,858 - EX28DRAFT_4215 0.67 -1.0
21,858 - EX28DRAFT_4215 0.67 -0.1
21,859 + EX28DRAFT_4215 0.67 +0.4
21,859 + EX28DRAFT_4215 0.67 +0.6
21,860 - EX28DRAFT_4215 0.67 +0.1
21,964 - EX28DRAFT_4215 0.72 -0.0
22,132 + EX28DRAFT_4215 0.79 -0.5
22,133 - EX28DRAFT_4215 0.79 -0.2
22,357 + EX28DRAFT_4215 0.89 +0.2
22,554 - -0.2
22,617 - +0.8
22,682 - +0.0
22,690 - -0.2
22,700 + +0.0
22,700 + +0.5
22,705 + +0.3
22,705 + -0.3
22,706 - -0.1
22,706 - -0.0
22,710 - +0.0
22,716 - +0.3
22,720 - -0.2
22,720 - -0.1
22,720 - +0.2
22,823 + -0.5
22,824 - -0.1
22,969 + EX28DRAFT_4216 0.11 -0.1
22,969 + EX28DRAFT_4216 0.11 +0.3
22,970 - EX28DRAFT_4216 0.11 -0.3
23,107 - EX28DRAFT_4216 0.20 +0.4
23,107 - EX28DRAFT_4216 0.20 -0.0
23,392 + EX28DRAFT_4216 0.39 -0.6
23,392 + EX28DRAFT_4216 0.39 +0.7
23,392 + EX28DRAFT_4216 0.39 +0.2
23,392 + EX28DRAFT_4216 0.39 +0.3
23,392 + EX28DRAFT_4216 0.39 +0.1
23,392 + EX28DRAFT_4216 0.39 +0.7
23,393 - EX28DRAFT_4216 0.39 +0.4
23,393 - EX28DRAFT_4216 0.39 +0.2
23,393 - EX28DRAFT_4216 0.39 +0.2
23,393 - EX28DRAFT_4216 0.39 +0.3
23,393 - EX28DRAFT_4216 0.39 +0.6
23,393 - EX28DRAFT_4216 0.39 -0.4
23,393 - EX28DRAFT_4216 0.39 +0.4
23,393 - EX28DRAFT_4216 0.39 -0.2
23,394 + EX28DRAFT_4216 0.39 +0.1
23,419 + EX28DRAFT_4216 0.40 +0.6
23,419 + EX28DRAFT_4216 0.40 -0.5
23,462 - EX28DRAFT_4216 0.43 +0.1
23,462 - EX28DRAFT_4216 0.43 -0.6
23,489 + EX28DRAFT_4216 0.45 -0.0
23,906 + EX28DRAFT_4216 0.72 +0.1
24,155 + EX28DRAFT_4216 0.89 -0.1
24,206 - -0.0
24,226 - +0.1
24,226 - +0.0
24,744 + EX28DRAFT_4217 0.42 -0.6
24,744 + EX28DRAFT_4217 0.42 +0.3
24,745 - EX28DRAFT_4217 0.43 -0.3
24,768 + EX28DRAFT_4217 0.45 +0.2
24,797 + EX28DRAFT_4217 0.48 +0.1
24,797 + EX28DRAFT_4217 0.48 -1.2
24,834 + EX28DRAFT_4217 0.52 -0.9
24,835 - EX28DRAFT_4217 0.52 +0.3
24,835 - EX28DRAFT_4217 0.52 -0.5
24,835 - EX28DRAFT_4217 0.52 +0.1
24,930 + EX28DRAFT_4217 0.61 -0.6
24,930 + EX28DRAFT_4217 0.61 -0.3
24,931 - EX28DRAFT_4217 0.61 -0.2
24,931 - EX28DRAFT_4217 0.61 +0.4
24,975 - EX28DRAFT_4217 0.66 +0.4
25,003 - EX28DRAFT_4217 0.68 -0.2
25,007 + EX28DRAFT_4217 0.69 -0.2
25,007 + EX28DRAFT_4217 0.69 +0.2
25,007 + EX28DRAFT_4217 0.69 -0.5
25,008 - EX28DRAFT_4217 0.69 +0.7
25,227 + -0.8
25,267 + +0.8
25,287 + +0.3
25,288 - +0.3
25,314 + -0.0
25,314 + -0.1
25,315 - +0.9

Or see this region's nucleotide sequence