Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4146 and EX28DRAFT_4147 are separated by 120 nucleotides EX28DRAFT_4147 and EX28DRAFT_4148 overlap by 4 nucleotides EX28DRAFT_4148 and EX28DRAFT_4149 are separated by 3 nucleotides EX28DRAFT_4149 and EX28DRAFT_4150 overlap by 11 nucleotides
EX28DRAFT_4146: EX28DRAFT_4146 - penicillin-binding protein, 1A family, at 127,101 to 129,653
_4146
EX28DRAFT_4147: EX28DRAFT_4147 - hypothetical protein, at 129,774 to 130,550
_4147
EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041
_4148
EX28DRAFT_4149: EX28DRAFT_4149 - hypothetical protein, at 131,045 to 131,500
_4149
EX28DRAFT_4150: EX28DRAFT_4150 - Protein of unknown function (DUF2531), at 131,490 to 131,894
_4150
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 128.828 kb on - strand, within EX28DRAFT_4146 at 128.900 kb on - strand, within EX28DRAFT_4146 at 128.953 kb on + strand, within EX28DRAFT_4146 at 128.953 kb on + strand, within EX28DRAFT_4146 at 128.954 kb on - strand, within EX28DRAFT_4146 at 128.954 kb on - strand, within EX28DRAFT_4146 at 128.969 kb on + strand, within EX28DRAFT_4146 at 128.970 kb on - strand, within EX28DRAFT_4146 at 129.107 kb on - strand, within EX28DRAFT_4146 at 129.167 kb on - strand, within EX28DRAFT_4146 at 129.167 kb on - strand, within EX28DRAFT_4146 at 129.236 kb on + strand, within EX28DRAFT_4146 at 129.237 kb on - strand, within EX28DRAFT_4146 at 129.296 kb on + strand, within EX28DRAFT_4146 at 129.297 kb on - strand, within EX28DRAFT_4146 at 129.382 kb on + strand, within EX28DRAFT_4146 at 129.418 kb on - strand at 129.418 kb on - strand at 129.442 kb on - strand at 129.502 kb on + strand at 129.503 kb on - strand at 129.571 kb on + strand at 129.571 kb on + strand at 129.571 kb on + strand at 129.572 kb on - strand at 129.578 kb on - strand at 129.578 kb on - strand at 129.579 kb on + strand at 129.637 kb on + strand at 129.637 kb on + strand at 129.638 kb on - strand at 129.642 kb on + strand at 129.643 kb on - strand at 129.690 kb on + strand at 129.708 kb on + strand at 129.708 kb on + strand at 129.709 kb on - strand at 129.709 kb on - strand at 129.709 kb on - strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.734 kb on - strand at 129.734 kb on - strand at 129.734 kb on - strand at 129.735 kb on + strand at 129.736 kb on - strand at 129.806 kb on + strand at 129.978 kb on + strand, within EX28DRAFT_4147 at 130.157 kb on + strand, within EX28DRAFT_4147 at 130.157 kb on + strand, within EX28DRAFT_4147 at 130.158 kb on - strand, within EX28DRAFT_4147 at 130.506 kb on + strand at 131.027 kb on - strand at 131.059 kb on - strand at 131.459 kb on - strand at 131.533 kb on + strand, within EX28DRAFT_4150 at 131.533 kb on + strand, within EX28DRAFT_4150
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 128,828 - EX28DRAFT_4146 0.68 +0.9 128,900 - EX28DRAFT_4146 0.70 -0.6 128,953 + EX28DRAFT_4146 0.73 -0.2 128,953 + EX28DRAFT_4146 0.73 -0.0 128,954 - EX28DRAFT_4146 0.73 +0.2 128,954 - EX28DRAFT_4146 0.73 -0.3 128,969 + EX28DRAFT_4146 0.73 +0.4 128,970 - EX28DRAFT_4146 0.73 +1.3 129,107 - EX28DRAFT_4146 0.79 +1.7 129,167 - EX28DRAFT_4146 0.81 -0.3 129,167 - EX28DRAFT_4146 0.81 -0.6 129,236 + EX28DRAFT_4146 0.84 -0.2 129,237 - EX28DRAFT_4146 0.84 -1.9 129,296 + EX28DRAFT_4146 0.86 -0.4 129,297 - EX28DRAFT_4146 0.86 -0.2 129,382 + EX28DRAFT_4146 0.89 -0.4 129,418 - -0.0 129,418 - -1.3 129,442 - -0.9 129,502 + -0.4 129,503 - +1.6 129,571 + -0.1 129,571 + -0.8 129,571 + -0.6 129,572 - -0.0 129,578 - -1.3 129,578 - +0.6 129,579 + +0.1 129,637 + +0.5 129,637 + -0.4 129,638 - +0.7 129,642 + -0.0 129,643 - +0.6 129,690 + +0.8 129,708 + -0.3 129,708 + +0.3 129,709 - +0.0 129,709 - -0.7 129,709 - +0.4 129,733 + +0.1 129,733 + +0.2 129,733 + +1.6 129,733 + -0.3 129,733 + -0.4 129,734 - -0.3 129,734 - -2.0 129,734 - +0.4 129,735 + -1.4 129,736 - +0.0 129,806 + -0.2 129,978 + EX28DRAFT_4147 0.26 -1.2 130,157 + EX28DRAFT_4147 0.49 -0.7 130,157 + EX28DRAFT_4147 0.49 -0.4 130,158 - EX28DRAFT_4147 0.49 -0.2 130,506 + -0.4 131,027 - -0.1 131,059 - -0.2 131,459 - -0.2 131,533 + EX28DRAFT_4150 0.11 +0.7 131,533 + EX28DRAFT_4150 0.11 -0.2
Or see this region's nucleotide sequence