Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4045

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4044 and EX28DRAFT_4045 are separated by 46 nucleotidesEX28DRAFT_4045 and EX28DRAFT_4046 are separated by 6 nucleotides EX28DRAFT_4044: EX28DRAFT_4044 - cellulose synthase catalytic subunit (UDP-forming), at 8,009 to 10,624 _4044 EX28DRAFT_4045: EX28DRAFT_4045 - Bacterial cellulose synthase subunit, at 10,671 to 13,055 _4045 EX28DRAFT_4046: EX28DRAFT_4046 - Endoglucanase Y, at 13,062 to 14,168 _4046 Position (kb) 10 11 12 13 14Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.754 kb on + strand, within EX28DRAFT_4044at 9.754 kb on + strand, within EX28DRAFT_4044at 9.754 kb on + strand, within EX28DRAFT_4044at 9.755 kb on - strand, within EX28DRAFT_4044at 9.758 kb on + strand, within EX28DRAFT_4044at 9.806 kb on + strand, within EX28DRAFT_4044at 9.806 kb on + strand, within EX28DRAFT_4044at 9.897 kb on - strand, within EX28DRAFT_4044at 9.923 kb on + strand, within EX28DRAFT_4044at 9.925 kb on + strand, within EX28DRAFT_4044at 9.925 kb on + strand, within EX28DRAFT_4044at 9.925 kb on + strand, within EX28DRAFT_4044at 9.926 kb on - strand, within EX28DRAFT_4044at 9.926 kb on - strand, within EX28DRAFT_4044at 9.926 kb on - strand, within EX28DRAFT_4044at 9.947 kb on - strand, within EX28DRAFT_4044at 9.978 kb on - strand, within EX28DRAFT_4044at 10.037 kb on + strand, within EX28DRAFT_4044at 10.038 kb on - strand, within EX28DRAFT_4044at 10.038 kb on - strand, within EX28DRAFT_4044at 10.085 kb on - strand, within EX28DRAFT_4044at 10.166 kb on - strand, within EX28DRAFT_4044at 10.274 kb on + strand, within EX28DRAFT_4044at 10.274 kb on + strand, within EX28DRAFT_4044at 10.275 kb on - strand, within EX28DRAFT_4044at 10.275 kb on - strand, within EX28DRAFT_4044at 10.275 kb on - strand, within EX28DRAFT_4044at 10.354 kb on + strand, within EX28DRAFT_4044at 10.372 kb on + strandat 10.372 kb on + strandat 10.426 kb on + strandat 10.532 kb on - strandat 10.808 kb on + strandat 10.976 kb on + strand, within EX28DRAFT_4045at 11.068 kb on - strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.328 kb on + strand, within EX28DRAFT_4045at 11.329 kb on - strand, within EX28DRAFT_4045at 11.523 kb on + strand, within EX28DRAFT_4045at 11.523 kb on + strand, within EX28DRAFT_4045at 11.524 kb on - strand, within EX28DRAFT_4045at 11.524 kb on - strand, within EX28DRAFT_4045at 11.629 kb on + strand, within EX28DRAFT_4045at 11.630 kb on - strand, within EX28DRAFT_4045at 11.790 kb on + strand, within EX28DRAFT_4045at 11.791 kb on - strand, within EX28DRAFT_4045at 11.851 kb on - strand, within EX28DRAFT_4045at 11.925 kb on + strand, within EX28DRAFT_4045at 11.926 kb on - strand, within EX28DRAFT_4045at 11.936 kb on + strand, within EX28DRAFT_4045at 11.952 kb on - strand, within EX28DRAFT_4045at 11.965 kb on - strand, within EX28DRAFT_4045at 11.970 kb on + strand, within EX28DRAFT_4045at 12.066 kb on - strand, within EX28DRAFT_4045at 12.154 kb on + strand, within EX28DRAFT_4045at 12.180 kb on + strand, within EX28DRAFT_4045at 12.180 kb on + strand, within EX28DRAFT_4045at 12.180 kb on + strand, within EX28DRAFT_4045at 12.285 kb on + strand, within EX28DRAFT_4045at 12.285 kb on + strand, within EX28DRAFT_4045at 12.288 kb on + strand, within EX28DRAFT_4045at 12.288 kb on + strand, within EX28DRAFT_4045at 12.289 kb on - strand, within EX28DRAFT_4045at 12.289 kb on - strand, within EX28DRAFT_4045at 12.639 kb on - strand, within EX28DRAFT_4045at 12.729 kb on + strand, within EX28DRAFT_4045at 12.729 kb on + strand, within EX28DRAFT_4045at 12.729 kb on + strand, within EX28DRAFT_4045at 12.891 kb on + strandat 12.892 kb on - strandat 12.892 kb on - strandat 12.892 kb on - strandat 12.895 kb on - strandat 12.895 kb on - strandat 12.895 kb on - strandat 12.899 kb on - strandat 12.899 kb on - strandat 12.899 kb on - strandat 12.899 kb on - strandat 13.020 kb on - strandat 13.155 kb on - strandat 13.165 kb on - strandat 13.214 kb on + strand, within EX28DRAFT_4046at 13.237 kb on - strand, within EX28DRAFT_4046at 13.471 kb on - strand, within EX28DRAFT_4046at 13.473 kb on - strand, within EX28DRAFT_4046at 13.473 kb on - strand, within EX28DRAFT_4046at 13.473 kb on - strand, within EX28DRAFT_4046at 13.605 kb on + strand, within EX28DRAFT_4046at 13.605 kb on + strand, within EX28DRAFT_4046at 13.605 kb on + strand, within EX28DRAFT_4046at 13.629 kb on + strand, within EX28DRAFT_4046at 13.629 kb on + strand, within EX28DRAFT_4046at 13.757 kb on - strand, within EX28DRAFT_4046at 13.767 kb on - strand, within EX28DRAFT_4046at 13.804 kb on - strand, within EX28DRAFT_4046at 13.985 kb on - strand, within EX28DRAFT_4046at 14.045 kb on + strand, within EX28DRAFT_4046at 14.045 kb on + strand, within EX28DRAFT_4046at 14.045 kb on + strand, within EX28DRAFT_4046at 14.046 kb on - strand, within EX28DRAFT_4046at 14.046 kb on - strand, within EX28DRAFT_4046at 14.046 kb on - strand, within EX28DRAFT_4046at 14.053 kb on - strand, within EX28DRAFT_4046at 14.053 kb on - strand, within EX28DRAFT_4046at 14.055 kb on + strand, within EX28DRAFT_4046at 14.055 kb on + strand, within EX28DRAFT_4046at 14.055 kb on + strand, within EX28DRAFT_4046

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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9,754 + EX28DRAFT_4044 0.67 +0.6
9,754 + EX28DRAFT_4044 0.67 -0.2
9,754 + EX28DRAFT_4044 0.67 +0.2
9,755 - EX28DRAFT_4044 0.67 +0.1
9,758 + EX28DRAFT_4044 0.67 +0.4
9,806 + EX28DRAFT_4044 0.69 +0.1
9,806 + EX28DRAFT_4044 0.69 +0.5
9,897 - EX28DRAFT_4044 0.72 +0.0
9,923 + EX28DRAFT_4044 0.73 +0.5
9,925 + EX28DRAFT_4044 0.73 +0.2
9,925 + EX28DRAFT_4044 0.73 +0.5
9,925 + EX28DRAFT_4044 0.73 -0.2
9,926 - EX28DRAFT_4044 0.73 +0.1
9,926 - EX28DRAFT_4044 0.73 -0.6
9,926 - EX28DRAFT_4044 0.73 +0.3
9,947 - EX28DRAFT_4044 0.74 -0.8
9,978 - EX28DRAFT_4044 0.75 +0.5
10,037 + EX28DRAFT_4044 0.78 -0.0
10,038 - EX28DRAFT_4044 0.78 +0.0
10,038 - EX28DRAFT_4044 0.78 +0.6
10,085 - EX28DRAFT_4044 0.79 +0.3
10,166 - EX28DRAFT_4044 0.82 +0.4
10,274 + EX28DRAFT_4044 0.87 -1.8
10,274 + EX28DRAFT_4044 0.87 +0.2
10,275 - EX28DRAFT_4044 0.87 +0.4
10,275 - EX28DRAFT_4044 0.87 +0.3
10,275 - EX28DRAFT_4044 0.87 +0.3
10,354 + EX28DRAFT_4044 0.90 +0.4
10,372 + +0.4
10,372 + +0.3
10,426 + +0.4
10,532 - +0.1
10,808 + +0.0
10,976 + EX28DRAFT_4045 0.13 +0.9
11,068 - EX28DRAFT_4045 0.17 +0.7
11,140 + EX28DRAFT_4045 0.20 +1.3
11,140 + EX28DRAFT_4045 0.20 +0.2
11,140 + EX28DRAFT_4045 0.20 +0.0
11,140 + EX28DRAFT_4045 0.20 +0.4
11,140 + EX28DRAFT_4045 0.20 +0.5
11,328 + EX28DRAFT_4045 0.28 -1.2
11,329 - EX28DRAFT_4045 0.28 +0.3
11,523 + EX28DRAFT_4045 0.36 -0.1
11,523 + EX28DRAFT_4045 0.36 -0.1
11,524 - EX28DRAFT_4045 0.36 +0.3
11,524 - EX28DRAFT_4045 0.36 +0.7
11,629 + EX28DRAFT_4045 0.40 +0.2
11,630 - EX28DRAFT_4045 0.40 +1.6
11,790 + EX28DRAFT_4045 0.47 +0.1
11,791 - EX28DRAFT_4045 0.47 +0.2
11,851 - EX28DRAFT_4045 0.49 -0.8
11,925 + EX28DRAFT_4045 0.53 +1.6
11,926 - EX28DRAFT_4045 0.53 +0.3
11,936 + EX28DRAFT_4045 0.53 +0.2
11,952 - EX28DRAFT_4045 0.54 +0.2
11,965 - EX28DRAFT_4045 0.54 +0.6
11,970 + EX28DRAFT_4045 0.54 +0.0
12,066 - EX28DRAFT_4045 0.58 +0.7
12,154 + EX28DRAFT_4045 0.62 +0.1
12,180 + EX28DRAFT_4045 0.63 +0.6
12,180 + EX28DRAFT_4045 0.63 -0.0
12,180 + EX28DRAFT_4045 0.63 +0.8
12,285 + EX28DRAFT_4045 0.68 +0.4
12,285 + EX28DRAFT_4045 0.68 +1.2
12,288 + EX28DRAFT_4045 0.68 +0.3
12,288 + EX28DRAFT_4045 0.68 -0.4
12,289 - EX28DRAFT_4045 0.68 -0.6
12,289 - EX28DRAFT_4045 0.68 +1.9
12,639 - EX28DRAFT_4045 0.83 -0.8
12,729 + EX28DRAFT_4045 0.86 +0.3
12,729 + EX28DRAFT_4045 0.86 -0.4
12,729 + EX28DRAFT_4045 0.86 +0.7
12,891 + -0.1
12,892 - -0.1
12,892 - -0.7
12,892 - +1.1
12,895 - +0.6
12,895 - +0.1
12,895 - +0.2
12,899 - +0.0
12,899 - -0.0
12,899 - -2.0
12,899 - -0.5
13,020 - -0.2
13,155 - -0.3
13,165 - +0.0
13,214 + EX28DRAFT_4046 0.14 -0.1
13,237 - EX28DRAFT_4046 0.16 -0.8
13,471 - EX28DRAFT_4046 0.37 +0.1
13,473 - EX28DRAFT_4046 0.37 +0.1
13,473 - EX28DRAFT_4046 0.37 -0.1
13,473 - EX28DRAFT_4046 0.37 -0.4
13,605 + EX28DRAFT_4046 0.49 +0.2
13,605 + EX28DRAFT_4046 0.49 -0.1
13,605 + EX28DRAFT_4046 0.49 -0.1
13,629 + EX28DRAFT_4046 0.51 -1.8
13,629 + EX28DRAFT_4046 0.51 -0.3
13,757 - EX28DRAFT_4046 0.63 +0.1
13,767 - EX28DRAFT_4046 0.64 +0.3
13,804 - EX28DRAFT_4046 0.67 +1.1
13,985 - EX28DRAFT_4046 0.83 -0.7
14,045 + EX28DRAFT_4046 0.89 +0.4
14,045 + EX28DRAFT_4046 0.89 -0.2
14,045 + EX28DRAFT_4046 0.89 -0.3
14,046 - EX28DRAFT_4046 0.89 +0.0
14,046 - EX28DRAFT_4046 0.89 -0.1
14,046 - EX28DRAFT_4046 0.89 -2.9
14,053 - EX28DRAFT_4046 0.90 -0.1
14,053 - EX28DRAFT_4046 0.90 -0.1
14,055 + EX28DRAFT_4046 0.90 -0.5
14,055 + EX28DRAFT_4046 0.90 +0.1
14,055 + EX28DRAFT_4046 0.90 +0.7

Or see this region's nucleotide sequence