Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4038 and EX28DRAFT_4039 are separated by 48 nucleotides EX28DRAFT_4039 and EX28DRAFT_4040 overlap by 8 nucleotides EX28DRAFT_4040 and EX28DRAFT_4041 overlap by 4 nucleotides
EX28DRAFT_4038: EX28DRAFT_4038 - Glycosyl hydrolases family 8, at 2,418 to 3,410
_4038
EX28DRAFT_4039: EX28DRAFT_4039 - cellulose synthase operon protein YhjU, at 3,459 to 5,138
_4039
EX28DRAFT_4040: EX28DRAFT_4040 - celllulose biosynthesis operon protein BcsF/YhjT, at 5,131 to 5,325
_4040
EX28DRAFT_4041: EX28DRAFT_4041 - cellulose biosynthesis protein BcsE, at 5,322 to 6,884
_4041
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -1
0
1
2 at 2.505 kb on + strand at 2.506 kb on - strand at 2.689 kb on - strand, within EX28DRAFT_4038 at 2.699 kb on + strand, within EX28DRAFT_4038 at 2.699 kb on + strand, within EX28DRAFT_4038 at 2.832 kb on - strand, within EX28DRAFT_4038 at 2.832 kb on - strand, within EX28DRAFT_4038 at 2.866 kb on - strand, within EX28DRAFT_4038 at 2.907 kb on - strand, within EX28DRAFT_4038 at 2.941 kb on - strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.133 kb on - strand, within EX28DRAFT_4038 at 3.157 kb on - strand, within EX28DRAFT_4038 at 3.277 kb on - strand, within EX28DRAFT_4038 at 3.363 kb on + strand at 3.363 kb on + strand at 3.364 kb on - strand at 3.366 kb on + strand at 3.408 kb on + strand at 3.453 kb on - strand at 3.460 kb on + strand at 3.460 kb on + strand at 3.502 kb on + strand at 3.502 kb on + strand at 3.503 kb on - strand at 3.503 kb on - strand at 3.908 kb on + strand, within EX28DRAFT_4039 at 3.908 kb on + strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.911 kb on - strand, within EX28DRAFT_4039 at 3.969 kb on - strand, within EX28DRAFT_4039 at 4.243 kb on + strand, within EX28DRAFT_4039 at 4.472 kb on + strand, within EX28DRAFT_4039 at 4.472 kb on + strand, within EX28DRAFT_4039 at 4.704 kb on - strand, within EX28DRAFT_4039 at 4.704 kb on - strand, within EX28DRAFT_4039 at 4.825 kb on + strand, within EX28DRAFT_4039 at 4.825 kb on + strand, within EX28DRAFT_4039 at 4.866 kb on - strand, within EX28DRAFT_4039 at 4.892 kb on + strand, within EX28DRAFT_4039 at 4.893 kb on - strand, within EX28DRAFT_4039 at 4.923 kb on + strand, within EX28DRAFT_4039 at 4.924 kb on - strand, within EX28DRAFT_4039 at 4.924 kb on - strand, within EX28DRAFT_4039 at 4.924 kb on - strand, within EX28DRAFT_4039 at 4.926 kb on - strand, within EX28DRAFT_4039 at 4.951 kb on - strand, within EX28DRAFT_4039 at 4.951 kb on - strand, within EX28DRAFT_4039 at 5.024 kb on - strand at 5.060 kb on - strand at 5.090 kb on - strand at 5.120 kb on + strand at 5.121 kb on - strand at 5.122 kb on + strand at 5.122 kb on + strand at 5.123 kb on - strand at 5.127 kb on - strand at 5.133 kb on - strand at 5.133 kb on - strand at 5.133 kb on - strand at 5.133 kb on - strand at 5.192 kb on - strand, within EX28DRAFT_4040 at 5.192 kb on - strand, within EX28DRAFT_4040 at 5.195 kb on + strand, within EX28DRAFT_4040 at 5.195 kb on + strand, within EX28DRAFT_4040 at 5.206 kb on - strand, within EX28DRAFT_4040 at 5.208 kb on + strand, within EX28DRAFT_4040 at 5.235 kb on + strand, within EX28DRAFT_4040 at 5.242 kb on + strand, within EX28DRAFT_4040 at 5.258 kb on + strand, within EX28DRAFT_4040 at 5.259 kb on - strand, within EX28DRAFT_4040 at 5.262 kb on - strand, within EX28DRAFT_4040 at 5.262 kb on - strand, within EX28DRAFT_4040 at 5.262 kb on - strand, within EX28DRAFT_4040 at 5.294 kb on - strand, within EX28DRAFT_4040 at 5.501 kb on + strand, within EX28DRAFT_4041 at 5.501 kb on + strand, within EX28DRAFT_4041 at 5.505 kb on - strand, within EX28DRAFT_4041 at 5.537 kb on + strand, within EX28DRAFT_4041 at 5.667 kb on + strand, within EX28DRAFT_4041 at 5.667 kb on + strand, within EX28DRAFT_4041 at 5.668 kb on - strand, within EX28DRAFT_4041 at 5.847 kb on - strand, within EX28DRAFT_4041 at 5.939 kb on + strand, within EX28DRAFT_4041 at 5.990 kb on + strand, within EX28DRAFT_4041 at 5.990 kb on + strand, within EX28DRAFT_4041 at 6.039 kb on + strand, within EX28DRAFT_4041 at 6.040 kb on - strand, within EX28DRAFT_4041
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,505 + -0.7 2,506 - -0.6 2,689 - EX28DRAFT_4038 0.27 +0.3 2,699 + EX28DRAFT_4038 0.28 +0.5 2,699 + EX28DRAFT_4038 0.28 -0.2 2,832 - EX28DRAFT_4038 0.42 +0.2 2,832 - EX28DRAFT_4038 0.42 -0.8 2,866 - EX28DRAFT_4038 0.45 -0.3 2,907 - EX28DRAFT_4038 0.49 -0.2 2,941 - EX28DRAFT_4038 0.53 -0.1 3,132 + EX28DRAFT_4038 0.72 -0.4 3,132 + EX28DRAFT_4038 0.72 -1.0 3,132 + EX28DRAFT_4038 0.72 +0.1 3,133 - EX28DRAFT_4038 0.72 +0.3 3,157 - EX28DRAFT_4038 0.74 +0.7 3,277 - EX28DRAFT_4038 0.87 -0.4 3,363 + +0.5 3,363 + +0.2 3,364 - +0.7 3,366 + -0.4 3,408 + -0.6 3,453 - +0.3 3,460 + -0.7 3,460 + -0.3 3,502 + +0.1 3,502 + -0.2 3,503 - +0.6 3,503 - +0.9 3,908 + EX28DRAFT_4039 0.27 +0.9 3,908 + EX28DRAFT_4039 0.27 +0.4 3,909 - EX28DRAFT_4039 0.27 -0.8 3,909 - EX28DRAFT_4039 0.27 +0.4 3,909 - EX28DRAFT_4039 0.27 -0.4 3,911 - EX28DRAFT_4039 0.27 +0.4 3,969 - EX28DRAFT_4039 0.30 -0.0 4,243 + EX28DRAFT_4039 0.47 +0.3 4,472 + EX28DRAFT_4039 0.60 +0.1 4,472 + EX28DRAFT_4039 0.60 +1.1 4,704 - EX28DRAFT_4039 0.74 +0.5 4,704 - EX28DRAFT_4039 0.74 +0.1 4,825 + EX28DRAFT_4039 0.81 -0.0 4,825 + EX28DRAFT_4039 0.81 +1.4 4,866 - EX28DRAFT_4039 0.84 +0.0 4,892 + EX28DRAFT_4039 0.85 -0.8 4,893 - EX28DRAFT_4039 0.85 +0.1 4,923 + EX28DRAFT_4039 0.87 +0.2 4,924 - EX28DRAFT_4039 0.87 -0.1 4,924 - EX28DRAFT_4039 0.87 -0.3 4,924 - EX28DRAFT_4039 0.87 +1.8 4,926 - EX28DRAFT_4039 0.87 +0.2 4,951 - EX28DRAFT_4039 0.89 +0.3 4,951 - EX28DRAFT_4039 0.89 -0.6 5,024 - +0.3 5,060 - -0.0 5,090 - +0.4 5,120 + +1.2 5,121 - +0.3 5,122 + +0.3 5,122 + +0.6 5,123 - -0.1 5,127 - +0.0 5,133 - +0.2 5,133 - -0.4 5,133 - +0.2 5,133 - +0.4 5,192 - EX28DRAFT_4040 0.31 -0.3 5,192 - EX28DRAFT_4040 0.31 -0.1 5,195 + EX28DRAFT_4040 0.33 +0.3 5,195 + EX28DRAFT_4040 0.33 +0.5 5,206 - EX28DRAFT_4040 0.38 +0.1 5,208 + EX28DRAFT_4040 0.39 +1.4 5,235 + EX28DRAFT_4040 0.53 -0.1 5,242 + EX28DRAFT_4040 0.57 +0.2 5,258 + EX28DRAFT_4040 0.65 +0.4 5,259 - EX28DRAFT_4040 0.66 -0.3 5,262 - EX28DRAFT_4040 0.67 +0.6 5,262 - EX28DRAFT_4040 0.67 +0.5 5,262 - EX28DRAFT_4040 0.67 +1.3 5,294 - EX28DRAFT_4040 0.84 +0.0 5,501 + EX28DRAFT_4041 0.11 +0.1 5,501 + EX28DRAFT_4041 0.11 +0.4 5,505 - EX28DRAFT_4041 0.12 +1.0 5,537 + EX28DRAFT_4041 0.14 -0.9 5,667 + EX28DRAFT_4041 0.22 +0.5 5,667 + EX28DRAFT_4041 0.22 +0.1 5,668 - EX28DRAFT_4041 0.22 -0.1 5,847 - EX28DRAFT_4041 0.34 +0.7 5,939 + EX28DRAFT_4041 0.39 +0.1 5,990 + EX28DRAFT_4041 0.43 -0.1 5,990 + EX28DRAFT_4041 0.43 +0.2 6,039 + EX28DRAFT_4041 0.46 -0.0 6,040 - EX28DRAFT_4041 0.46 -0.2
Or see this region's nucleotide sequence