Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3984

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3983 and EX28DRAFT_3984 are separated by 115 nucleotidesEX28DRAFT_3984 and EX28DRAFT_3985 are separated by 110 nucleotides EX28DRAFT_3983: EX28DRAFT_3983 - HAD-superfamily hydrolase, subfamily IIB, at 190,255 to 191,067 _3983 EX28DRAFT_3984: EX28DRAFT_3984 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 191,183 to 192,208 _3984 EX28DRAFT_3985: EX28DRAFT_3985 - Transcriptional regulator, at 192,319 to 193,254 _3985 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 190.284 kb on - strandat 190.479 kb on + strand, within EX28DRAFT_3983at 190.480 kb on - strand, within EX28DRAFT_3983at 190.512 kb on - strand, within EX28DRAFT_3983at 190.535 kb on + strand, within EX28DRAFT_3983at 190.535 kb on + strand, within EX28DRAFT_3983at 190.536 kb on - strand, within EX28DRAFT_3983at 190.536 kb on - strand, within EX28DRAFT_3983at 190.547 kb on - strand, within EX28DRAFT_3983at 190.695 kb on - strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.697 kb on + strand, within EX28DRAFT_3983at 190.698 kb on - strand, within EX28DRAFT_3983at 190.720 kb on - strand, within EX28DRAFT_3983at 190.721 kb on + strand, within EX28DRAFT_3983at 190.721 kb on + strand, within EX28DRAFT_3983at 190.722 kb on - strand, within EX28DRAFT_3983at 190.722 kb on - strand, within EX28DRAFT_3983at 190.722 kb on - strand, within EX28DRAFT_3983at 190.728 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.790 kb on + strand, within EX28DRAFT_3983at 190.791 kb on - strand, within EX28DRAFT_3983at 190.791 kb on - strand, within EX28DRAFT_3983at 190.800 kb on - strand, within EX28DRAFT_3983at 190.862 kb on + strand, within EX28DRAFT_3983at 190.862 kb on + strand, within EX28DRAFT_3983at 190.863 kb on - strand, within EX28DRAFT_3983at 190.863 kb on - strand, within EX28DRAFT_3983at 190.910 kb on + strand, within EX28DRAFT_3983at 190.911 kb on - strand, within EX28DRAFT_3983at 191.125 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.131 kb on + strandat 191.132 kb on - strandat 191.132 kb on - strandat 191.133 kb on + strandat 191.158 kb on + strandat 191.159 kb on - strandat 191.164 kb on + strandat 191.431 kb on + strand, within EX28DRAFT_3984at 191.431 kb on + strand, within EX28DRAFT_3984at 191.497 kb on + strand, within EX28DRAFT_3984at 191.498 kb on - strand, within EX28DRAFT_3984at 191.498 kb on - strand, within EX28DRAFT_3984at 191.768 kb on + strand, within EX28DRAFT_3984at 191.768 kb on + strand, within EX28DRAFT_3984at 191.911 kb on + strand, within EX28DRAFT_3984at 192.082 kb on + strand, within EX28DRAFT_3984at 192.083 kb on - strand, within EX28DRAFT_3984at 192.212 kb on - strandat 192.237 kb on + strandat 192.252 kb on - strandat 192.312 kb on - strandat 192.518 kb on - strand, within EX28DRAFT_3985at 192.875 kb on + strand, within EX28DRAFT_3985at 192.885 kb on + strand, within EX28DRAFT_3985at 192.886 kb on - strand, within EX28DRAFT_3985at 192.894 kb on + strand, within EX28DRAFT_3985at 192.894 kb on + strand, within EX28DRAFT_3985at 192.894 kb on + strand, within EX28DRAFT_3985at 192.895 kb on - strand, within EX28DRAFT_3985at 192.895 kb on - strand, within EX28DRAFT_3985at 192.898 kb on + strand, within EX28DRAFT_3985at 192.898 kb on + strand, within EX28DRAFT_3985at 192.898 kb on + strand, within EX28DRAFT_3985at 192.899 kb on - strand, within EX28DRAFT_3985at 192.984 kb on + strand, within EX28DRAFT_3985at 192.985 kb on - strand, within EX28DRAFT_3985at 193.069 kb on - strand, within EX28DRAFT_3985at 193.081 kb on - strand, within EX28DRAFT_3985at 193.181 kb on + strandat 193.181 kb on + strandat 193.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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190,284 - -0.3
190,479 + EX28DRAFT_3983 0.28 -0.1
190,480 - EX28DRAFT_3983 0.28 -0.1
190,512 - EX28DRAFT_3983 0.32 -1.9
190,535 + EX28DRAFT_3983 0.34 -0.4
190,535 + EX28DRAFT_3983 0.34 -0.1
190,536 - EX28DRAFT_3983 0.35 -0.3
190,536 - EX28DRAFT_3983 0.35 -1.7
190,547 - EX28DRAFT_3983 0.36 +0.3
190,695 - EX28DRAFT_3983 0.54 +0.1
190,697 + EX28DRAFT_3983 0.54 -0.1
190,697 + EX28DRAFT_3983 0.54 -0.3
190,697 + EX28DRAFT_3983 0.54 +0.6
190,697 + EX28DRAFT_3983 0.54 +0.0
190,698 - EX28DRAFT_3983 0.54 +0.4
190,720 - EX28DRAFT_3983 0.57 +0.0
190,721 + EX28DRAFT_3983 0.57 -0.5
190,721 + EX28DRAFT_3983 0.57 +0.6
190,722 - EX28DRAFT_3983 0.57 -2.0
190,722 - EX28DRAFT_3983 0.57 +0.8
190,722 - EX28DRAFT_3983 0.57 -0.3
190,728 + EX28DRAFT_3983 0.58 -1.2
190,790 + EX28DRAFT_3983 0.66 -0.1
190,790 + EX28DRAFT_3983 0.66 +0.1
190,790 + EX28DRAFT_3983 0.66 +0.3
190,790 + EX28DRAFT_3983 0.66 -0.4
190,791 - EX28DRAFT_3983 0.66 -0.1
190,791 - EX28DRAFT_3983 0.66 -1.1
190,800 - EX28DRAFT_3983 0.67 +0.6
190,862 + EX28DRAFT_3983 0.75 -0.9
190,862 + EX28DRAFT_3983 0.75 +0.2
190,863 - EX28DRAFT_3983 0.75 +0.1
190,863 - EX28DRAFT_3983 0.75 -1.1
190,910 + EX28DRAFT_3983 0.81 +0.0
190,911 - EX28DRAFT_3983 0.81 +0.0
191,125 + +0.3
191,131 + +0.5
191,131 + +0.3
191,131 + +0.2
191,131 + +0.0
191,131 + -0.2
191,131 + -1.2
191,131 + -0.2
191,132 - +0.2
191,132 - +0.1
191,133 + +0.6
191,158 + -0.4
191,159 - +0.6
191,164 + +0.4
191,431 + EX28DRAFT_3984 0.24 +2.2
191,431 + EX28DRAFT_3984 0.24 -0.6
191,497 + EX28DRAFT_3984 0.31 -0.8
191,498 - EX28DRAFT_3984 0.31 -0.7
191,498 - EX28DRAFT_3984 0.31 -2.4
191,768 + EX28DRAFT_3984 0.57 +0.4
191,768 + EX28DRAFT_3984 0.57 +0.4
191,911 + EX28DRAFT_3984 0.71 -0.8
192,082 + EX28DRAFT_3984 0.88 +0.5
192,083 - EX28DRAFT_3984 0.88 -1.2
192,212 - +0.0
192,237 + -0.4
192,252 - -0.0
192,312 - +0.1
192,518 - EX28DRAFT_3985 0.21 -0.2
192,875 + EX28DRAFT_3985 0.59 -0.4
192,885 + EX28DRAFT_3985 0.60 -0.0
192,886 - EX28DRAFT_3985 0.61 -0.4
192,894 + EX28DRAFT_3985 0.61 -0.9
192,894 + EX28DRAFT_3985 0.61 +0.8
192,894 + EX28DRAFT_3985 0.61 +0.3
192,895 - EX28DRAFT_3985 0.62 +0.2
192,895 - EX28DRAFT_3985 0.62 +0.8
192,898 + EX28DRAFT_3985 0.62 +0.4
192,898 + EX28DRAFT_3985 0.62 +0.2
192,898 + EX28DRAFT_3985 0.62 +0.1
192,899 - EX28DRAFT_3985 0.62 +0.1
192,984 + EX28DRAFT_3985 0.71 +0.5
192,985 - EX28DRAFT_3985 0.71 -0.1
193,069 - EX28DRAFT_3985 0.80 +0.3
193,081 - EX28DRAFT_3985 0.81 -0.1
193,181 + -0.2
193,181 + -0.1
193,186 - +0.1

Or see this region's nucleotide sequence