Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3979 and EX28DRAFT_3980 overlap by 4 nucleotides EX28DRAFT_3980 and EX28DRAFT_3981 overlap by 17 nucleotides EX28DRAFT_3981 and EX28DRAFT_3982 overlap by 4 nucleotides
EX28DRAFT_3979: EX28DRAFT_3979 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 186,718 to 187,866
_3979
EX28DRAFT_3980: EX28DRAFT_3980 - 2-keto-3-deoxy-6-phosphogluconate aldolase, at 187,863 to 188,480
_3980
EX28DRAFT_3981: EX28DRAFT_3981 - 2-keto-3-deoxy-galactonokinase, at 188,464 to 189,342
_3981
EX28DRAFT_3982: EX28DRAFT_3982 - Transcriptional regulators, at 189,339 to 190,028
_3982
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 186.915 kb on + strand, within EX28DRAFT_3979 at 186.915 kb on + strand, within EX28DRAFT_3979 at 186.915 kb on + strand, within EX28DRAFT_3979 at 186.916 kb on - strand, within EX28DRAFT_3979 at 186.916 kb on - strand, within EX28DRAFT_3979 at 187.034 kb on + strand, within EX28DRAFT_3979 at 187.137 kb on + strand, within EX28DRAFT_3979 at 187.209 kb on - strand, within EX28DRAFT_3979 at 187.515 kb on + strand, within EX28DRAFT_3979 at 187.515 kb on + strand, within EX28DRAFT_3979 at 187.516 kb on - strand, within EX28DRAFT_3979 at 187.517 kb on + strand, within EX28DRAFT_3979 at 187.518 kb on - strand, within EX28DRAFT_3979 at 187.665 kb on - strand, within EX28DRAFT_3979 at 187.744 kb on + strand, within EX28DRAFT_3979 at 187.745 kb on - strand, within EX28DRAFT_3979 at 187.841 kb on + strand at 187.858 kb on + strand at 187.858 kb on + strand at 188.071 kb on + strand, within EX28DRAFT_3980 at 188.072 kb on - strand, within EX28DRAFT_3980 at 188.940 kb on - strand, within EX28DRAFT_3981 at 188.940 kb on - strand, within EX28DRAFT_3981 at 188.940 kb on - strand, within EX28DRAFT_3981 at 189.040 kb on - strand, within EX28DRAFT_3981 at 189.049 kb on - strand, within EX28DRAFT_3981 at 189.222 kb on + strand, within EX28DRAFT_3981 at 189.223 kb on - strand, within EX28DRAFT_3981 at 189.383 kb on + strand at 189.383 kb on + strand at 189.383 kb on + strand at 189.383 kb on + strand at 189.384 kb on - strand at 189.443 kb on + strand, within EX28DRAFT_3982 at 189.443 kb on + strand, within EX28DRAFT_3982
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 186,915 + EX28DRAFT_3979 0.17 +0.4 186,915 + EX28DRAFT_3979 0.17 +0.1 186,915 + EX28DRAFT_3979 0.17 +0.5 186,916 - EX28DRAFT_3979 0.17 +0.8 186,916 - EX28DRAFT_3979 0.17 +0.3 187,034 + EX28DRAFT_3979 0.28 +0.1 187,137 + EX28DRAFT_3979 0.36 -0.2 187,209 - EX28DRAFT_3979 0.43 -1.1 187,515 + EX28DRAFT_3979 0.69 +0.0 187,515 + EX28DRAFT_3979 0.69 -0.4 187,516 - EX28DRAFT_3979 0.69 -0.3 187,517 + EX28DRAFT_3979 0.70 -0.2 187,518 - EX28DRAFT_3979 0.70 -0.2 187,665 - EX28DRAFT_3979 0.82 +0.3 187,744 + EX28DRAFT_3979 0.89 -0.1 187,745 - EX28DRAFT_3979 0.89 +0.4 187,841 + -0.4 187,858 + +0.3 187,858 + -1.8 188,071 + EX28DRAFT_3980 0.34 +0.9 188,072 - EX28DRAFT_3980 0.34 +0.5 188,940 - EX28DRAFT_3981 0.54 -0.0 188,940 - EX28DRAFT_3981 0.54 -0.3 188,940 - EX28DRAFT_3981 0.54 -0.3 189,040 - EX28DRAFT_3981 0.66 +0.3 189,049 - EX28DRAFT_3981 0.67 -0.0 189,222 + EX28DRAFT_3981 0.86 +1.0 189,223 - EX28DRAFT_3981 0.86 -0.7 189,383 + -2.0 189,383 + -0.8 189,383 + +0.0 189,383 + -0.1 189,384 - -1.2 189,443 + EX28DRAFT_3982 0.15 -0.2 189,443 + EX28DRAFT_3982 0.15 +0.2
Or see this region's nucleotide sequence