Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3970 and EX28DRAFT_3971 are separated by 221 nucleotides EX28DRAFT_3971 and EX28DRAFT_3972 overlap by 33 nucleotides EX28DRAFT_3972 and EX28DRAFT_3973 are separated by 165 nucleotides EX28DRAFT_3973 and EX28DRAFT_3974 are separated by 136 nucleotides
EX28DRAFT_3970: EX28DRAFT_3970 - PTS system, maltose and glucose-specific subfamily, IIC component/PTS system, alpha-glucoside-specific IIBC component, at 178,018 to 179,640
_3970
EX28DRAFT_3971: EX28DRAFT_3971 - Transcriptional regulators, at 179,862 to 180,608
_3971
EX28DRAFT_3972: EX28DRAFT_3972 - Predicted permease, at 180,576 to 182,237
_3972
EX28DRAFT_3973: EX28DRAFT_3973 - Molecular chaperone (small heat shock protein), at 182,403 to 182,831
_3973
EX28DRAFT_3974: EX28DRAFT_3974 - Molecular chaperone (small heat shock protein), at 182,968 to 183,378
_3974
Position (kb) 180
181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 179.626 kb on + strand at 179.626 kb on + strand at 179.667 kb on - strand at 179.682 kb on + strand at 179.682 kb on + strand at 179.682 kb on + strand at 179.683 kb on - strand at 179.720 kb on - strand at 179.917 kb on - strand at 180.219 kb on + strand, within EX28DRAFT_3971 at 180.279 kb on - strand, within EX28DRAFT_3971 at 180.339 kb on + strand, within EX28DRAFT_3971 at 180.378 kb on + strand, within EX28DRAFT_3971 at 180.378 kb on + strand, within EX28DRAFT_3971 at 180.378 kb on + strand, within EX28DRAFT_3971 at 180.379 kb on - strand, within EX28DRAFT_3971 at 180.461 kb on + strand, within EX28DRAFT_3971 at 180.461 kb on + strand, within EX28DRAFT_3971 at 180.522 kb on - strand, within EX28DRAFT_3971 at 180.543 kb on + strand at 180.543 kb on + strand at 180.544 kb on - strand at 180.544 kb on - strand at 180.577 kb on + strand at 180.577 kb on + strand at 180.578 kb on - strand at 180.606 kb on + strand at 180.607 kb on - strand at 180.658 kb on + strand at 180.659 kb on - strand at 180.659 kb on - strand at 180.659 kb on - strand at 180.789 kb on + strand, within EX28DRAFT_3972 at 180.821 kb on + strand, within EX28DRAFT_3972 at 180.821 kb on + strand, within EX28DRAFT_3972 at 180.970 kb on + strand, within EX28DRAFT_3972 at 181.400 kb on + strand, within EX28DRAFT_3972 at 181.401 kb on - strand, within EX28DRAFT_3972 at 181.437 kb on + strand, within EX28DRAFT_3972 at 181.437 kb on + strand, within EX28DRAFT_3972 at 181.514 kb on + strand, within EX28DRAFT_3972 at 181.545 kb on - strand, within EX28DRAFT_3972 at 181.583 kb on + strand, within EX28DRAFT_3972 at 181.583 kb on + strand, within EX28DRAFT_3972 at 181.584 kb on - strand, within EX28DRAFT_3972 at 181.635 kb on - strand, within EX28DRAFT_3972 at 181.705 kb on - strand, within EX28DRAFT_3972 at 181.938 kb on + strand, within EX28DRAFT_3972 at 181.938 kb on + strand, within EX28DRAFT_3972 at 182.024 kb on - strand, within EX28DRAFT_3972 at 182.024 kb on - strand, within EX28DRAFT_3972 at 182.054 kb on + strand, within EX28DRAFT_3972 at 182.169 kb on - strand at 182.172 kb on - strand at 182.172 kb on - strand at 182.256 kb on - strand at 182.261 kb on + strand at 182.262 kb on - strand at 182.262 kb on - strand at 182.262 kb on - strand at 182.265 kb on + strand at 182.265 kb on + strand at 182.300 kb on + strand at 182.301 kb on - strand at 182.301 kb on - strand at 182.401 kb on + strand at 182.401 kb on + strand at 182.401 kb on + strand at 182.404 kb on + strand at 182.404 kb on + strand at 182.404 kb on + strand at 182.405 kb on - strand at 182.405 kb on - strand at 182.405 kb on - strand at 182.409 kb on - strand at 182.525 kb on + strand, within EX28DRAFT_3973 at 182.616 kb on - strand, within EX28DRAFT_3973 at 182.728 kb on + strand, within EX28DRAFT_3973 at 182.815 kb on - strand at 182.815 kb on - strand at 182.822 kb on - strand at 182.825 kb on + strand at 182.826 kb on - strand at 182.835 kb on - strand at 182.835 kb on - strand at 182.869 kb on + strand at 182.870 kb on - strand at 182.914 kb on - strand at 182.965 kb on + strand at 182.966 kb on - strand at 182.969 kb on + strand at 182.970 kb on - strand at 183.128 kb on + strand, within EX28DRAFT_3974 at 183.128 kb on + strand, within EX28DRAFT_3974 at 183.128 kb on + strand, within EX28DRAFT_3974 at 183.129 kb on - strand, within EX28DRAFT_3974 at 183.129 kb on - strand, within EX28DRAFT_3974 at 183.132 kb on + strand, within EX28DRAFT_3974 at 183.133 kb on - strand, within EX28DRAFT_3974 at 183.133 kb on - strand, within EX28DRAFT_3974 at 183.133 kb on - strand, within EX28DRAFT_3974
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 179,626 + +0.1 179,626 + +0.3 179,667 - +0.2 179,682 + -0.8 179,682 + -0.7 179,682 + -0.5 179,683 - -0.5 179,720 - +0.4 179,917 - +0.4 180,219 + EX28DRAFT_3971 0.48 +0.1 180,279 - EX28DRAFT_3971 0.56 -0.1 180,339 + EX28DRAFT_3971 0.64 -0.7 180,378 + EX28DRAFT_3971 0.69 -0.2 180,378 + EX28DRAFT_3971 0.69 +0.3 180,378 + EX28DRAFT_3971 0.69 +0.5 180,379 - EX28DRAFT_3971 0.69 +0.7 180,461 + EX28DRAFT_3971 0.80 +0.3 180,461 + EX28DRAFT_3971 0.80 -0.4 180,522 - EX28DRAFT_3971 0.88 -0.1 180,543 + -0.3 180,543 + +0.3 180,544 - -0.1 180,544 - -0.2 180,577 + -0.3 180,577 + -0.9 180,578 - -0.9 180,606 + -1.5 180,607 - -0.0 180,658 + -0.5 180,659 - -0.3 180,659 - -0.5 180,659 - +1.8 180,789 + EX28DRAFT_3972 0.13 +0.8 180,821 + EX28DRAFT_3972 0.15 -0.3 180,821 + EX28DRAFT_3972 0.15 +0.9 180,970 + EX28DRAFT_3972 0.24 -1.3 181,400 + EX28DRAFT_3972 0.50 -0.4 181,401 - EX28DRAFT_3972 0.50 +0.9 181,437 + EX28DRAFT_3972 0.52 +0.2 181,437 + EX28DRAFT_3972 0.52 +1.5 181,514 + EX28DRAFT_3972 0.56 +2.7 181,545 - EX28DRAFT_3972 0.58 +0.5 181,583 + EX28DRAFT_3972 0.61 +0.2 181,583 + EX28DRAFT_3972 0.61 -1.4 181,584 - EX28DRAFT_3972 0.61 +1.3 181,635 - EX28DRAFT_3972 0.64 -2.5 181,705 - EX28DRAFT_3972 0.68 -0.1 181,938 + EX28DRAFT_3972 0.82 -0.4 181,938 + EX28DRAFT_3972 0.82 +0.7 182,024 - EX28DRAFT_3972 0.87 +1.5 182,024 - EX28DRAFT_3972 0.87 +0.1 182,054 + EX28DRAFT_3972 0.89 -0.1 182,169 - -0.5 182,172 - +0.3 182,172 - +0.7 182,256 - -0.2 182,261 + -0.1 182,262 - -0.0 182,262 - -0.4 182,262 - +1.7 182,265 + +0.5 182,265 + -0.8 182,300 + -0.3 182,301 - +0.4 182,301 - +0.2 182,401 + -0.1 182,401 + -0.8 182,401 + -0.1 182,404 + +0.4 182,404 + +0.4 182,404 + +1.0 182,405 - -0.2 182,405 - +0.4 182,405 - +0.1 182,409 - -0.7 182,525 + EX28DRAFT_3973 0.28 +0.3 182,616 - EX28DRAFT_3973 0.50 -1.7 182,728 + EX28DRAFT_3973 0.76 +0.1 182,815 - +0.1 182,815 - -0.0 182,822 - +0.1 182,825 + -0.3 182,826 - -0.2 182,835 - +1.1 182,835 - +0.2 182,869 + -0.1 182,870 - +0.3 182,914 - +0.0 182,965 + -0.1 182,966 - +0.3 182,969 + +0.1 182,970 - +0.1 183,128 + EX28DRAFT_3974 0.39 +1.2 183,128 + EX28DRAFT_3974 0.39 -1.1 183,128 + EX28DRAFT_3974 0.39 -0.3 183,129 - EX28DRAFT_3974 0.39 -0.1 183,129 - EX28DRAFT_3974 0.39 -0.1 183,132 + EX28DRAFT_3974 0.40 +0.1 183,133 - EX28DRAFT_3974 0.40 -0.1 183,133 - EX28DRAFT_3974 0.40 -0.5 183,133 - EX28DRAFT_3974 0.40 -0.7
Or see this region's nucleotide sequence