Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3970

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3969 and EX28DRAFT_3970 overlap by 4 nucleotidesEX28DRAFT_3970 and EX28DRAFT_3971 are separated by 221 nucleotidesEX28DRAFT_3971 and EX28DRAFT_3972 overlap by 33 nucleotides EX28DRAFT_3969: EX28DRAFT_3969 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 176,699 to 178,021 _3969 EX28DRAFT_3970: EX28DRAFT_3970 - PTS system, maltose and glucose-specific subfamily, IIC component/PTS system, alpha-glucoside-specific IIBC component, at 178,018 to 179,640 _3970 EX28DRAFT_3971: EX28DRAFT_3971 - Transcriptional regulators, at 179,862 to 180,608 _3971 EX28DRAFT_3972: EX28DRAFT_3972 - Predicted permease, at 180,576 to 182,237 _3972 Position (kb) 178 179 180Strain fitness (log2 ratio) -1 0 1 2at 177.060 kb on + strand, within EX28DRAFT_3969at 177.060 kb on + strand, within EX28DRAFT_3969at 177.104 kb on - strand, within EX28DRAFT_3969at 177.223 kb on - strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.293 kb on - strand, within EX28DRAFT_3969at 177.339 kb on + strand, within EX28DRAFT_3969at 177.615 kb on + strand, within EX28DRAFT_3969at 177.628 kb on - strand, within EX28DRAFT_3969at 177.628 kb on - strand, within EX28DRAFT_3969at 177.808 kb on + strand, within EX28DRAFT_3969at 177.809 kb on - strand, within EX28DRAFT_3969at 177.809 kb on - strand, within EX28DRAFT_3969at 177.977 kb on - strandat 178.024 kb on + strandat 178.026 kb on + strandat 178.026 kb on + strandat 178.027 kb on - strandat 178.349 kb on + strand, within EX28DRAFT_3970at 178.364 kb on + strand, within EX28DRAFT_3970at 178.365 kb on - strand, within EX28DRAFT_3970at 178.442 kb on + strand, within EX28DRAFT_3970at 178.442 kb on + strand, within EX28DRAFT_3970at 178.483 kb on + strand, within EX28DRAFT_3970at 178.581 kb on - strand, within EX28DRAFT_3970at 178.641 kb on + strand, within EX28DRAFT_3970at 178.791 kb on + strand, within EX28DRAFT_3970at 178.791 kb on + strand, within EX28DRAFT_3970at 178.791 kb on + strand, within EX28DRAFT_3970at 178.792 kb on - strand, within EX28DRAFT_3970at 178.792 kb on - strand, within EX28DRAFT_3970at 178.983 kb on + strand, within EX28DRAFT_3970at 178.983 kb on + strand, within EX28DRAFT_3970at 178.984 kb on - strand, within EX28DRAFT_3970at 178.984 kb on - strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.986 kb on - strand, within EX28DRAFT_3970at 178.986 kb on - strand, within EX28DRAFT_3970at 179.172 kb on - strand, within EX28DRAFT_3970at 179.229 kb on + strand, within EX28DRAFT_3970at 179.626 kb on + strandat 179.626 kb on + strandat 179.667 kb on - strandat 179.682 kb on + strandat 179.682 kb on + strandat 179.682 kb on + strandat 179.683 kb on - strandat 179.720 kb on - strandat 179.917 kb on - strandat 180.219 kb on + strand, within EX28DRAFT_3971at 180.279 kb on - strand, within EX28DRAFT_3971at 180.339 kb on + strand, within EX28DRAFT_3971at 180.378 kb on + strand, within EX28DRAFT_3971at 180.378 kb on + strand, within EX28DRAFT_3971at 180.378 kb on + strand, within EX28DRAFT_3971at 180.379 kb on - strand, within EX28DRAFT_3971at 180.461 kb on + strand, within EX28DRAFT_3971at 180.461 kb on + strand, within EX28DRAFT_3971at 180.522 kb on - strand, within EX28DRAFT_3971at 180.543 kb on + strandat 180.543 kb on + strandat 180.544 kb on - strandat 180.544 kb on - strandat 180.577 kb on + strandat 180.577 kb on + strandat 180.578 kb on - strandat 180.606 kb on + strandat 180.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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177,060 + EX28DRAFT_3969 0.27 -0.0
177,060 + EX28DRAFT_3969 0.27 -0.9
177,104 - EX28DRAFT_3969 0.31 -1.4
177,223 - EX28DRAFT_3969 0.40 +0.8
177,225 + EX28DRAFT_3969 0.40 +0.0
177,225 + EX28DRAFT_3969 0.40 -0.6
177,225 + EX28DRAFT_3969 0.40 -0.2
177,225 + EX28DRAFT_3969 0.40 -0.8
177,226 - EX28DRAFT_3969 0.40 +0.0
177,226 - EX28DRAFT_3969 0.40 -0.1
177,226 - EX28DRAFT_3969 0.40 -0.5
177,234 + EX28DRAFT_3969 0.40 +0.2
177,234 + EX28DRAFT_3969 0.40 +0.1
177,234 + EX28DRAFT_3969 0.40 -1.1
177,293 - EX28DRAFT_3969 0.45 +0.2
177,339 + EX28DRAFT_3969 0.48 -0.3
177,615 + EX28DRAFT_3969 0.69 +0.0
177,628 - EX28DRAFT_3969 0.70 -0.1
177,628 - EX28DRAFT_3969 0.70 +0.4
177,808 + EX28DRAFT_3969 0.84 +0.3
177,809 - EX28DRAFT_3969 0.84 -0.5
177,809 - EX28DRAFT_3969 0.84 -1.2
177,977 - +0.1
178,024 + +0.9
178,026 + -0.1
178,026 + -0.2
178,027 - -0.1
178,349 + EX28DRAFT_3970 0.20 +0.5
178,364 + EX28DRAFT_3970 0.21 +1.9
178,365 - EX28DRAFT_3970 0.21 +0.8
178,442 + EX28DRAFT_3970 0.26 -0.4
178,442 + EX28DRAFT_3970 0.26 +1.1
178,483 + EX28DRAFT_3970 0.29 -0.2
178,581 - EX28DRAFT_3970 0.35 -0.5
178,641 + EX28DRAFT_3970 0.38 +0.0
178,791 + EX28DRAFT_3970 0.48 +0.1
178,791 + EX28DRAFT_3970 0.48 -0.1
178,791 + EX28DRAFT_3970 0.48 +0.6
178,792 - EX28DRAFT_3970 0.48 -0.3
178,792 - EX28DRAFT_3970 0.48 +1.2
178,983 + EX28DRAFT_3970 0.59 +0.5
178,983 + EX28DRAFT_3970 0.59 -0.1
178,984 - EX28DRAFT_3970 0.60 -0.0
178,984 - EX28DRAFT_3970 0.60 -0.5
178,985 + EX28DRAFT_3970 0.60 -0.2
178,985 + EX28DRAFT_3970 0.60 -0.1
178,985 + EX28DRAFT_3970 0.60 +0.5
178,985 + EX28DRAFT_3970 0.60 -0.1
178,985 + EX28DRAFT_3970 0.60 +2.3
178,986 - EX28DRAFT_3970 0.60 +1.0
178,986 - EX28DRAFT_3970 0.60 +0.3
179,172 - EX28DRAFT_3970 0.71 -0.0
179,229 + EX28DRAFT_3970 0.75 +0.2
179,626 + +0.1
179,626 + +0.3
179,667 - +0.2
179,682 + -0.8
179,682 + -0.7
179,682 + -0.5
179,683 - -0.5
179,720 - +0.4
179,917 - +0.4
180,219 + EX28DRAFT_3971 0.48 +0.1
180,279 - EX28DRAFT_3971 0.56 -0.1
180,339 + EX28DRAFT_3971 0.64 -0.7
180,378 + EX28DRAFT_3971 0.69 -0.2
180,378 + EX28DRAFT_3971 0.69 +0.3
180,378 + EX28DRAFT_3971 0.69 +0.5
180,379 - EX28DRAFT_3971 0.69 +0.7
180,461 + EX28DRAFT_3971 0.80 +0.3
180,461 + EX28DRAFT_3971 0.80 -0.4
180,522 - EX28DRAFT_3971 0.88 -0.1
180,543 + -0.3
180,543 + +0.3
180,544 - -0.1
180,544 - -0.2
180,577 + -0.3
180,577 + -0.9
180,578 - -0.9
180,606 + -1.5
180,607 - -0.0

Or see this region's nucleotide sequence