Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3969

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3966 and EX28DRAFT_3967 are separated by 82 nucleotidesEX28DRAFT_3967 and EX28DRAFT_3968 overlap by 11 nucleotidesEX28DRAFT_3968 and EX28DRAFT_3969 are separated by 92 nucleotidesEX28DRAFT_3969 and EX28DRAFT_3970 overlap by 4 nucleotides EX28DRAFT_3966: EX28DRAFT_3966 - D-serine ammonia-lyase (EC 4.3.1.18), at 174,553 to 175,839 _3966 EX28DRAFT_3967: EX28DRAFT_3967 - Domain of unknown function (DUF202), at 175,922 to 176,269 _3967 EX28DRAFT_3968: EX28DRAFT_3968 - Predicted membrane protein, at 176,259 to 176,606 _3968 EX28DRAFT_3969: EX28DRAFT_3969 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 176,699 to 178,021 _3969 EX28DRAFT_3970: EX28DRAFT_3970 - PTS system, maltose and glucose-specific subfamily, IIC component/PTS system, alpha-glucoside-specific IIBC component, at 178,018 to 179,640 _3970 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -1 0 1 2at 175.820 kb on - strandat 175.820 kb on - strandat 175.838 kb on - strandat 175.838 kb on - strandat 175.841 kb on + strandat 175.842 kb on - strandat 175.873 kb on + strandat 175.891 kb on + strandat 175.891 kb on + strandat 175.891 kb on + strandat 176.003 kb on - strand, within EX28DRAFT_3967at 176.078 kb on + strand, within EX28DRAFT_3967at 176.270 kb on - strandat 176.339 kb on + strand, within EX28DRAFT_3968at 176.341 kb on + strand, within EX28DRAFT_3968at 176.648 kb on + strandat 176.648 kb on + strandat 176.649 kb on - strandat 176.718 kb on + strandat 176.719 kb on - strandat 176.959 kb on + strand, within EX28DRAFT_3969at 177.060 kb on + strand, within EX28DRAFT_3969at 177.060 kb on + strand, within EX28DRAFT_3969at 177.104 kb on - strand, within EX28DRAFT_3969at 177.223 kb on - strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.293 kb on - strand, within EX28DRAFT_3969at 177.339 kb on + strand, within EX28DRAFT_3969at 177.615 kb on + strand, within EX28DRAFT_3969at 177.628 kb on - strand, within EX28DRAFT_3969at 177.628 kb on - strand, within EX28DRAFT_3969at 177.808 kb on + strand, within EX28DRAFT_3969at 177.809 kb on - strand, within EX28DRAFT_3969at 177.809 kb on - strand, within EX28DRAFT_3969at 177.977 kb on - strandat 178.024 kb on + strandat 178.026 kb on + strandat 178.026 kb on + strandat 178.027 kb on - strandat 178.349 kb on + strand, within EX28DRAFT_3970at 178.364 kb on + strand, within EX28DRAFT_3970at 178.365 kb on - strand, within EX28DRAFT_3970at 178.442 kb on + strand, within EX28DRAFT_3970at 178.442 kb on + strand, within EX28DRAFT_3970at 178.483 kb on + strand, within EX28DRAFT_3970at 178.581 kb on - strand, within EX28DRAFT_3970at 178.641 kb on + strand, within EX28DRAFT_3970at 178.791 kb on + strand, within EX28DRAFT_3970at 178.791 kb on + strand, within EX28DRAFT_3970at 178.791 kb on + strand, within EX28DRAFT_3970at 178.792 kb on - strand, within EX28DRAFT_3970at 178.792 kb on - strand, within EX28DRAFT_3970at 178.983 kb on + strand, within EX28DRAFT_3970at 178.983 kb on + strand, within EX28DRAFT_3970at 178.984 kb on - strand, within EX28DRAFT_3970at 178.984 kb on - strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.985 kb on + strand, within EX28DRAFT_3970at 178.986 kb on - strand, within EX28DRAFT_3970at 178.986 kb on - strand, within EX28DRAFT_3970

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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175,820 - +0.5
175,820 - -0.2
175,838 - +0.8
175,838 - -0.9
175,841 + +0.4
175,842 - -0.5
175,873 + +0.1
175,891 + -0.1
175,891 + +0.0
175,891 + -0.1
176,003 - EX28DRAFT_3967 0.23 +0.2
176,078 + EX28DRAFT_3967 0.45 -0.1
176,270 - -0.1
176,339 + EX28DRAFT_3968 0.23 -0.3
176,341 + EX28DRAFT_3968 0.24 +0.4
176,648 + -0.1
176,648 + -0.3
176,649 - -0.1
176,718 + -0.3
176,719 - +0.7
176,959 + EX28DRAFT_3969 0.20 -1.5
177,060 + EX28DRAFT_3969 0.27 -0.0
177,060 + EX28DRAFT_3969 0.27 -0.9
177,104 - EX28DRAFT_3969 0.31 -1.4
177,223 - EX28DRAFT_3969 0.40 +0.8
177,225 + EX28DRAFT_3969 0.40 +0.0
177,225 + EX28DRAFT_3969 0.40 -0.6
177,225 + EX28DRAFT_3969 0.40 -0.2
177,225 + EX28DRAFT_3969 0.40 -0.8
177,226 - EX28DRAFT_3969 0.40 +0.0
177,226 - EX28DRAFT_3969 0.40 -0.1
177,226 - EX28DRAFT_3969 0.40 -0.5
177,234 + EX28DRAFT_3969 0.40 +0.2
177,234 + EX28DRAFT_3969 0.40 +0.1
177,234 + EX28DRAFT_3969 0.40 -1.1
177,293 - EX28DRAFT_3969 0.45 +0.2
177,339 + EX28DRAFT_3969 0.48 -0.3
177,615 + EX28DRAFT_3969 0.69 +0.0
177,628 - EX28DRAFT_3969 0.70 -0.1
177,628 - EX28DRAFT_3969 0.70 +0.4
177,808 + EX28DRAFT_3969 0.84 +0.3
177,809 - EX28DRAFT_3969 0.84 -0.5
177,809 - EX28DRAFT_3969 0.84 -1.2
177,977 - +0.1
178,024 + +0.9
178,026 + -0.1
178,026 + -0.2
178,027 - -0.1
178,349 + EX28DRAFT_3970 0.20 +0.5
178,364 + EX28DRAFT_3970 0.21 +1.9
178,365 - EX28DRAFT_3970 0.21 +0.8
178,442 + EX28DRAFT_3970 0.26 -0.4
178,442 + EX28DRAFT_3970 0.26 +1.1
178,483 + EX28DRAFT_3970 0.29 -0.2
178,581 - EX28DRAFT_3970 0.35 -0.5
178,641 + EX28DRAFT_3970 0.38 +0.0
178,791 + EX28DRAFT_3970 0.48 +0.1
178,791 + EX28DRAFT_3970 0.48 -0.1
178,791 + EX28DRAFT_3970 0.48 +0.6
178,792 - EX28DRAFT_3970 0.48 -0.3
178,792 - EX28DRAFT_3970 0.48 +1.2
178,983 + EX28DRAFT_3970 0.59 +0.5
178,983 + EX28DRAFT_3970 0.59 -0.1
178,984 - EX28DRAFT_3970 0.60 -0.0
178,984 - EX28DRAFT_3970 0.60 -0.5
178,985 + EX28DRAFT_3970 0.60 -0.2
178,985 + EX28DRAFT_3970 0.60 -0.1
178,985 + EX28DRAFT_3970 0.60 +0.5
178,985 + EX28DRAFT_3970 0.60 -0.1
178,985 + EX28DRAFT_3970 0.60 +2.3
178,986 - EX28DRAFT_3970 0.60 +1.0
178,986 - EX28DRAFT_3970 0.60 +0.3

Or see this region's nucleotide sequence