Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3950 and EX28DRAFT_3951 overlap by 8 nucleotides EX28DRAFT_3951 and EX28DRAFT_3952 overlap by 4 nucleotides EX28DRAFT_3952 and EX28DRAFT_3953 are separated by 100 nucleotides EX28DRAFT_3953 and EX28DRAFT_3954 are separated by 3 nucleotides
EX28DRAFT_3950: EX28DRAFT_3950 - phosphoglycerate transporter family protein, at 160,227 to 161,546
_3950
EX28DRAFT_3951: EX28DRAFT_3951 - Signal transduction histidine kinase, glucose-6-phosphate specific, at 161,539 to 163,044
_3951
EX28DRAFT_3952: EX28DRAFT_3952 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 163,041 to 163,634
_3952
EX28DRAFT_3953: EX28DRAFT_3953 - acetolactate synthase, small subunit (EC 2.2.1.6), at 163,735 to 164,022
_3953
EX28DRAFT_3954: EX28DRAFT_3954 - acetolactate synthase, large subunit (EC 2.2.1.6), at 164,026 to 165,714
_3954
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -1
0
1 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.730 kb on - strand, within EX28DRAFT_3950 at 160.730 kb on - strand, within EX28DRAFT_3950 at 160.768 kb on + strand, within EX28DRAFT_3950 at 160.769 kb on - strand, within EX28DRAFT_3950 at 160.781 kb on - strand, within EX28DRAFT_3950 at 160.805 kb on - strand, within EX28DRAFT_3950 at 160.822 kb on + strand, within EX28DRAFT_3950 at 160.823 kb on - strand, within EX28DRAFT_3950 at 161.014 kb on + strand, within EX28DRAFT_3950 at 161.067 kb on - strand, within EX28DRAFT_3950 at 161.116 kb on + strand, within EX28DRAFT_3950 at 161.269 kb on + strand, within EX28DRAFT_3950 at 161.270 kb on - strand, within EX28DRAFT_3950 at 161.270 kb on - strand, within EX28DRAFT_3950 at 161.323 kb on + strand, within EX28DRAFT_3950 at 161.324 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.429 kb on - strand at 161.540 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.928 kb on + strand, within EX28DRAFT_3951 at 161.929 kb on - strand, within EX28DRAFT_3951 at 161.984 kb on + strand, within EX28DRAFT_3951 at 161.985 kb on - strand, within EX28DRAFT_3951 at 162.229 kb on + strand, within EX28DRAFT_3951 at 162.284 kb on - strand, within EX28DRAFT_3951 at 162.372 kb on - strand, within EX28DRAFT_3951 at 162.769 kb on - strand, within EX28DRAFT_3951 at 163.171 kb on - strand, within EX28DRAFT_3952 at 163.269 kb on + strand, within EX28DRAFT_3952 at 163.274 kb on - strand, within EX28DRAFT_3952 at 163.406 kb on + strand, within EX28DRAFT_3952 at 163.481 kb on + strand, within EX28DRAFT_3952 at 163.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 160,729 + EX28DRAFT_3950 0.38 +0.8 160,729 + EX28DRAFT_3950 0.38 -0.2 160,729 + EX28DRAFT_3950 0.38 -0.5 160,730 - EX28DRAFT_3950 0.38 +0.5 160,730 - EX28DRAFT_3950 0.38 +0.7 160,768 + EX28DRAFT_3950 0.41 -0.3 160,769 - EX28DRAFT_3950 0.41 +0.2 160,781 - EX28DRAFT_3950 0.42 +0.0 160,805 - EX28DRAFT_3950 0.44 +0.0 160,822 + EX28DRAFT_3950 0.45 +0.4 160,823 - EX28DRAFT_3950 0.45 +0.5 161,014 + EX28DRAFT_3950 0.60 -1.5 161,067 - EX28DRAFT_3950 0.64 +0.0 161,116 + EX28DRAFT_3950 0.67 +0.2 161,269 + EX28DRAFT_3950 0.79 +0.4 161,270 - EX28DRAFT_3950 0.79 +0.1 161,270 - EX28DRAFT_3950 0.79 -0.2 161,323 + EX28DRAFT_3950 0.83 -0.0 161,324 - EX28DRAFT_3950 0.83 +0.3 161,333 - EX28DRAFT_3950 0.84 -0.2 161,333 - EX28DRAFT_3950 0.84 +0.0 161,333 - EX28DRAFT_3950 0.84 -0.3 161,429 - +0.2 161,540 + +1.7 161,549 + +0.9 161,549 + +0.0 161,550 - -0.1 161,550 - -0.1 161,847 + EX28DRAFT_3951 0.20 +0.0 161,847 + EX28DRAFT_3951 0.20 -0.1 161,847 + EX28DRAFT_3951 0.20 +0.1 161,847 + EX28DRAFT_3951 0.20 +0.0 161,928 + EX28DRAFT_3951 0.26 +0.1 161,929 - EX28DRAFT_3951 0.26 -0.3 161,984 + EX28DRAFT_3951 0.30 -0.4 161,985 - EX28DRAFT_3951 0.30 +0.1 162,229 + EX28DRAFT_3951 0.46 +0.2 162,284 - EX28DRAFT_3951 0.49 -0.6 162,372 - EX28DRAFT_3951 0.55 +0.1 162,769 - EX28DRAFT_3951 0.82 -1.2 163,171 - EX28DRAFT_3952 0.22 +0.1 163,269 + EX28DRAFT_3952 0.38 -0.2 163,274 - EX28DRAFT_3952 0.39 -0.0 163,406 + EX28DRAFT_3952 0.61 +0.9 163,481 + EX28DRAFT_3952 0.74 -0.2 163,602 - +0.6
Or see this region's nucleotide sequence