Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3940

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3939 and EX28DRAFT_3940 are separated by 17 nucleotidesEX28DRAFT_3940 and EX28DRAFT_3941 are separated by 2 nucleotidesEX28DRAFT_3941 and EX28DRAFT_3942 are separated by 136 nucleotides EX28DRAFT_3939: EX28DRAFT_3939 - PTS system, lactose/cellobiose family IIC component, at 148,582 to 149,907 _3939 EX28DRAFT_3940: EX28DRAFT_3940 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 149,925 to 151,301 _3940 EX28DRAFT_3941: EX28DRAFT_3941 - Phosphotransferase system cellobiose-specific component IIA, at 151,304 to 151,609 _3941 EX28DRAFT_3942: EX28DRAFT_3942 - Maltoporin (phage lambda and maltose receptor), at 151,746 to 153,125 _3942 Position (kb) 149 150 151 152Strain fitness (log2 ratio) -2 -1 0 1at 148.993 kb on + strand, within EX28DRAFT_3939at 149.038 kb on + strand, within EX28DRAFT_3939at 149.038 kb on + strand, within EX28DRAFT_3939at 149.054 kb on - strand, within EX28DRAFT_3939at 149.054 kb on - strand, within EX28DRAFT_3939at 149.446 kb on + strand, within EX28DRAFT_3939at 149.446 kb on + strand, within EX28DRAFT_3939at 149.446 kb on + strand, within EX28DRAFT_3939at 149.446 kb on + strand, within EX28DRAFT_3939at 149.447 kb on - strand, within EX28DRAFT_3939at 149.465 kb on + strand, within EX28DRAFT_3939at 149.787 kb on + strandat 149.787 kb on + strandat 149.788 kb on - strandat 149.788 kb on - strandat 149.788 kb on - strandat 149.809 kb on + strandat 149.809 kb on + strandat 149.809 kb on + strandat 149.839 kb on - strandat 149.839 kb on - strandat 149.839 kb on - strandat 149.905 kb on + strandat 149.906 kb on - strandat 149.925 kb on - strandat 149.932 kb on - strandat 150.084 kb on + strand, within EX28DRAFT_3940at 150.115 kb on + strand, within EX28DRAFT_3940at 150.213 kb on + strand, within EX28DRAFT_3940at 150.260 kb on + strand, within EX28DRAFT_3940at 150.260 kb on + strand, within EX28DRAFT_3940at 150.260 kb on + strand, within EX28DRAFT_3940at 150.260 kb on + strand, within EX28DRAFT_3940at 150.261 kb on - strand, within EX28DRAFT_3940at 150.261 kb on - strand, within EX28DRAFT_3940at 150.261 kb on - strand, within EX28DRAFT_3940at 150.398 kb on + strand, within EX28DRAFT_3940at 150.398 kb on + strand, within EX28DRAFT_3940at 150.496 kb on - strand, within EX28DRAFT_3940at 150.731 kb on - strand, within EX28DRAFT_3940at 150.798 kb on + strand, within EX28DRAFT_3940at 150.799 kb on - strand, within EX28DRAFT_3940at 150.801 kb on + strand, within EX28DRAFT_3940at 150.879 kb on - strand, within EX28DRAFT_3940at 150.882 kb on + strand, within EX28DRAFT_3940at 150.883 kb on - strand, within EX28DRAFT_3940at 150.942 kb on - strand, within EX28DRAFT_3940at 150.945 kb on + strand, within EX28DRAFT_3940at 150.945 kb on + strand, within EX28DRAFT_3940at 150.946 kb on - strand, within EX28DRAFT_3940at 151.521 kb on + strand, within EX28DRAFT_3941at 151.522 kb on - strand, within EX28DRAFT_3941at 151.652 kb on - strandat 151.731 kb on + strandat 151.731 kb on + strandat 151.731 kb on + strandat 151.741 kb on + strandat 151.986 kb on - strand, within EX28DRAFT_3942at 152.040 kb on + strand, within EX28DRAFT_3942at 152.040 kb on + strand, within EX28DRAFT_3942at 152.040 kb on + strand, within EX28DRAFT_3942at 152.040 kb on + strand, within EX28DRAFT_3942at 152.062 kb on - strand, within EX28DRAFT_3942at 152.062 kb on - strand, within EX28DRAFT_3942at 152.198 kb on + strand, within EX28DRAFT_3942

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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148,993 + EX28DRAFT_3939 0.31 +0.3
149,038 + EX28DRAFT_3939 0.34 -0.3
149,038 + EX28DRAFT_3939 0.34 +0.0
149,054 - EX28DRAFT_3939 0.36 -0.1
149,054 - EX28DRAFT_3939 0.36 -0.3
149,446 + EX28DRAFT_3939 0.65 +0.2
149,446 + EX28DRAFT_3939 0.65 -0.7
149,446 + EX28DRAFT_3939 0.65 -0.5
149,446 + EX28DRAFT_3939 0.65 -0.1
149,447 - EX28DRAFT_3939 0.65 +0.2
149,465 + EX28DRAFT_3939 0.67 +0.4
149,787 + +0.1
149,787 + -0.1
149,788 - -0.5
149,788 - +0.5
149,788 - +0.4
149,809 + +0.0
149,809 + -0.1
149,809 + +0.7
149,839 - -0.5
149,839 - +0.1
149,839 - -0.5
149,905 + +0.3
149,906 - +0.8
149,925 - +0.8
149,932 - -0.6
150,084 + EX28DRAFT_3940 0.12 -0.1
150,115 + EX28DRAFT_3940 0.14 -1.2
150,213 + EX28DRAFT_3940 0.21 +0.4
150,260 + EX28DRAFT_3940 0.24 -1.2
150,260 + EX28DRAFT_3940 0.24 -0.3
150,260 + EX28DRAFT_3940 0.24 -0.0
150,260 + EX28DRAFT_3940 0.24 -0.1
150,261 - EX28DRAFT_3940 0.24 -0.0
150,261 - EX28DRAFT_3940 0.24 -0.6
150,261 - EX28DRAFT_3940 0.24 +0.2
150,398 + EX28DRAFT_3940 0.34 -0.2
150,398 + EX28DRAFT_3940 0.34 +0.5
150,496 - EX28DRAFT_3940 0.41 +0.2
150,731 - EX28DRAFT_3940 0.59 +0.7
150,798 + EX28DRAFT_3940 0.63 -0.4
150,799 - EX28DRAFT_3940 0.63 -0.0
150,801 + EX28DRAFT_3940 0.64 -0.1
150,879 - EX28DRAFT_3940 0.69 -0.3
150,882 + EX28DRAFT_3940 0.69 +0.1
150,883 - EX28DRAFT_3940 0.70 +0.2
150,942 - EX28DRAFT_3940 0.74 -0.2
150,945 + EX28DRAFT_3940 0.74 -2.5
150,945 + EX28DRAFT_3940 0.74 +0.5
150,946 - EX28DRAFT_3940 0.74 +0.1
151,521 + EX28DRAFT_3941 0.71 -0.0
151,522 - EX28DRAFT_3941 0.71 +0.2
151,652 - +0.1
151,731 + -0.1
151,731 + -2.6
151,731 + +0.3
151,741 + +1.4
151,986 - EX28DRAFT_3942 0.17 +0.9
152,040 + EX28DRAFT_3942 0.21 -0.9
152,040 + EX28DRAFT_3942 0.21 +0.1
152,040 + EX28DRAFT_3942 0.21 +0.0
152,040 + EX28DRAFT_3942 0.21 +0.1
152,062 - EX28DRAFT_3942 0.23 -0.3
152,062 - EX28DRAFT_3942 0.23 -0.1
152,198 + EX28DRAFT_3942 0.33 +1.3

Or see this region's nucleotide sequence