Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3933

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3931 and EX28DRAFT_3932 are separated by 186 nucleotidesEX28DRAFT_3932 and EX28DRAFT_3933 are separated by 148 nucleotidesEX28DRAFT_3933 and EX28DRAFT_3934 overlap by 1 nucleotides EX28DRAFT_3931: EX28DRAFT_3931 - Predicted acetyltransferase, at 139,630 to 140,049 _3931 EX28DRAFT_3932: EX28DRAFT_3932 - transcriptional regulator, TetR family, at 140,236 to 140,805 _3932 EX28DRAFT_3933: EX28DRAFT_3933 - RND family efflux transporter, MFP subunit, at 140,954 to 142,075 _3933 EX28DRAFT_3934: EX28DRAFT_3934 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 142,075 to 145,185 _3934 Position (kb) 140 141 142 143Strain fitness (log2 ratio) -1 0 1 2at 139.977 kb on + strand, within EX28DRAFT_3931at 139.978 kb on - strand, within EX28DRAFT_3931at 139.980 kb on - strand, within EX28DRAFT_3931at 139.980 kb on - strand, within EX28DRAFT_3931at 139.999 kb on + strand, within EX28DRAFT_3931at 140.024 kb on - strandat 140.028 kb on + strandat 140.028 kb on + strandat 140.029 kb on - strandat 140.029 kb on - strandat 140.050 kb on - strandat 140.050 kb on - strandat 140.050 kb on - strandat 140.061 kb on + strandat 140.152 kb on + strandat 140.668 kb on - strand, within EX28DRAFT_3932at 140.735 kb on + strand, within EX28DRAFT_3932at 140.757 kb on - strandat 140.757 kb on - strandat 140.768 kb on - strandat 140.780 kb on + strandat 140.785 kb on - strandat 140.804 kb on - strandat 140.818 kb on - strandat 140.835 kb on - strandat 140.891 kb on - strandat 140.894 kb on + strandat 140.895 kb on - strandat 140.910 kb on + strandat 141.566 kb on + strand, within EX28DRAFT_3933at 141.567 kb on - strand, within EX28DRAFT_3933at 141.678 kb on - strand, within EX28DRAFT_3933at 141.678 kb on - strand, within EX28DRAFT_3933at 141.944 kb on + strand, within EX28DRAFT_3933at 141.944 kb on + strand, within EX28DRAFT_3933at 141.945 kb on - strand, within EX28DRAFT_3933at 142.222 kb on + strandat 142.223 kb on - strandat 142.223 kb on - strandat 142.306 kb on + strandat 142.307 kb on - strandat 142.504 kb on + strand, within EX28DRAFT_3934at 142.504 kb on + strand, within EX28DRAFT_3934at 142.504 kb on + strand, within EX28DRAFT_3934at 142.664 kb on - strand, within EX28DRAFT_3934at 142.729 kb on - strand, within EX28DRAFT_3934

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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139,977 + EX28DRAFT_3931 0.83 -0.0
139,978 - EX28DRAFT_3931 0.83 -0.5
139,980 - EX28DRAFT_3931 0.83 +0.0
139,980 - EX28DRAFT_3931 0.83 +0.2
139,999 + EX28DRAFT_3931 0.88 -0.8
140,024 - -1.0
140,028 + +0.3
140,028 + +0.4
140,029 - +0.0
140,029 - +0.0
140,050 - -0.1
140,050 - -0.3
140,050 - -0.5
140,061 + +2.2
140,152 + +0.2
140,668 - EX28DRAFT_3932 0.76 +0.2
140,735 + EX28DRAFT_3932 0.88 -0.4
140,757 - +0.3
140,757 - +0.2
140,768 - -0.2
140,780 + +0.1
140,785 - +0.3
140,804 - +0.3
140,818 - -0.1
140,835 - +0.2
140,891 - -0.5
140,894 + +0.1
140,895 - +0.2
140,910 + +0.5
141,566 + EX28DRAFT_3933 0.55 +0.2
141,567 - EX28DRAFT_3933 0.55 -0.3
141,678 - EX28DRAFT_3933 0.65 +0.8
141,678 - EX28DRAFT_3933 0.65 -0.4
141,944 + EX28DRAFT_3933 0.88 +0.6
141,944 + EX28DRAFT_3933 0.88 -0.1
141,945 - EX28DRAFT_3933 0.88 +0.8
142,222 + +0.2
142,223 - +0.0
142,223 - +0.4
142,306 + +0.1
142,307 - -0.3
142,504 + EX28DRAFT_3934 0.14 -0.3
142,504 + EX28DRAFT_3934 0.14 +0.5
142,504 + EX28DRAFT_3934 0.14 -0.5
142,664 - EX28DRAFT_3934 0.19 +0.2
142,729 - EX28DRAFT_3934 0.21 +0.1

Or see this region's nucleotide sequence