Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3931 and EX28DRAFT_3932 are separated by 186 nucleotides EX28DRAFT_3932 and EX28DRAFT_3933 are separated by 148 nucleotides EX28DRAFT_3933 and EX28DRAFT_3934 overlap by 1 nucleotides
EX28DRAFT_3931: EX28DRAFT_3931 - Predicted acetyltransferase, at 139,630 to 140,049
_3931
EX28DRAFT_3932: EX28DRAFT_3932 - transcriptional regulator, TetR family, at 140,236 to 140,805
_3932
EX28DRAFT_3933: EX28DRAFT_3933 - RND family efflux transporter, MFP subunit, at 140,954 to 142,075
_3933
EX28DRAFT_3934: EX28DRAFT_3934 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 142,075 to 145,185
_3934
Position (kb)
140
141
142
143 Strain fitness (log2 ratio)
-1
0
1
2 at 139.977 kb on + strand, within EX28DRAFT_3931 at 139.978 kb on - strand, within EX28DRAFT_3931 at 139.980 kb on - strand, within EX28DRAFT_3931 at 139.980 kb on - strand, within EX28DRAFT_3931 at 139.999 kb on + strand, within EX28DRAFT_3931 at 140.024 kb on - strand at 140.028 kb on + strand at 140.028 kb on + strand at 140.029 kb on - strand at 140.029 kb on - strand at 140.050 kb on - strand at 140.050 kb on - strand at 140.050 kb on - strand at 140.061 kb on + strand at 140.152 kb on + strand at 140.668 kb on - strand, within EX28DRAFT_3932 at 140.735 kb on + strand, within EX28DRAFT_3932 at 140.757 kb on - strand at 140.757 kb on - strand at 140.768 kb on - strand at 140.780 kb on + strand at 140.785 kb on - strand at 140.804 kb on - strand at 140.818 kb on - strand at 140.835 kb on - strand at 140.891 kb on - strand at 140.894 kb on + strand at 140.895 kb on - strand at 140.910 kb on + strand at 141.566 kb on + strand, within EX28DRAFT_3933 at 141.567 kb on - strand, within EX28DRAFT_3933 at 141.678 kb on - strand, within EX28DRAFT_3933 at 141.678 kb on - strand, within EX28DRAFT_3933 at 141.944 kb on + strand, within EX28DRAFT_3933 at 141.944 kb on + strand, within EX28DRAFT_3933 at 141.945 kb on - strand, within EX28DRAFT_3933 at 142.222 kb on + strand at 142.223 kb on - strand at 142.223 kb on - strand at 142.306 kb on + strand at 142.307 kb on - strand at 142.504 kb on + strand, within EX28DRAFT_3934 at 142.504 kb on + strand, within EX28DRAFT_3934 at 142.504 kb on + strand, within EX28DRAFT_3934 at 142.664 kb on - strand, within EX28DRAFT_3934 at 142.729 kb on - strand, within EX28DRAFT_3934
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 139,977 + EX28DRAFT_3931 0.83 -0.0 139,978 - EX28DRAFT_3931 0.83 -0.5 139,980 - EX28DRAFT_3931 0.83 +0.0 139,980 - EX28DRAFT_3931 0.83 +0.2 139,999 + EX28DRAFT_3931 0.88 -0.8 140,024 - -1.0 140,028 + +0.3 140,028 + +0.4 140,029 - +0.0 140,029 - +0.0 140,050 - -0.1 140,050 - -0.3 140,050 - -0.5 140,061 + +2.2 140,152 + +0.2 140,668 - EX28DRAFT_3932 0.76 +0.2 140,735 + EX28DRAFT_3932 0.88 -0.4 140,757 - +0.3 140,757 - +0.2 140,768 - -0.2 140,780 + +0.1 140,785 - +0.3 140,804 - +0.3 140,818 - -0.1 140,835 - +0.2 140,891 - -0.5 140,894 + +0.1 140,895 - +0.2 140,910 + +0.5 141,566 + EX28DRAFT_3933 0.55 +0.2 141,567 - EX28DRAFT_3933 0.55 -0.3 141,678 - EX28DRAFT_3933 0.65 +0.8 141,678 - EX28DRAFT_3933 0.65 -0.4 141,944 + EX28DRAFT_3933 0.88 +0.6 141,944 + EX28DRAFT_3933 0.88 -0.1 141,945 - EX28DRAFT_3933 0.88 +0.8 142,222 + +0.2 142,223 - +0.0 142,223 - +0.4 142,306 + +0.1 142,307 - -0.3 142,504 + EX28DRAFT_3934 0.14 -0.3 142,504 + EX28DRAFT_3934 0.14 +0.5 142,504 + EX28DRAFT_3934 0.14 -0.5 142,664 - EX28DRAFT_3934 0.19 +0.2 142,729 - EX28DRAFT_3934 0.21 +0.1
Or see this region's nucleotide sequence