Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3896

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3894 and EX28DRAFT_3895 are separated by 205 nucleotidesEX28DRAFT_3895 and EX28DRAFT_3896 are separated by 2 nucleotidesEX28DRAFT_3896 and EX28DRAFT_3897 are separated by 251 nucleotidesEX28DRAFT_3897 and EX28DRAFT_3898 are separated by 54 nucleotides EX28DRAFT_3894: EX28DRAFT_3894 - TIGR00255 family protein, at 101,533 to 102,396 _3894 EX28DRAFT_3895: EX28DRAFT_3895 - Predicted membrane protein, at 102,602 to 103,219 _3895 EX28DRAFT_3896: EX28DRAFT_3896 - NAD-dependent DNA ligase (contains BRCT domain type II), at 103,222 to 104,892 _3896 EX28DRAFT_3897: EX28DRAFT_3897 - guanylate kinase (EC 2.7.4.8), at 105,144 to 105,767 _3897 EX28DRAFT_3898: EX28DRAFT_3898 - DNA-directed RNA polymerase subunit omega (EC 2.7.7.6), at 105,822 to 106,097 _3898 Position (kb) 103 104 105Strain fitness (log2 ratio) -1 0 1at 102.264 kb on + strand, within EX28DRAFT_3894at 102.264 kb on + strand, within EX28DRAFT_3894at 102.264 kb on + strand, within EX28DRAFT_3894at 102.599 kb on + strandat 102.599 kb on + strandat 102.601 kb on + strandat 102.601 kb on + strandat 102.602 kb on - strandat 102.602 kb on - strandat 102.602 kb on - strandat 102.709 kb on + strand, within EX28DRAFT_3895at 102.792 kb on - strand, within EX28DRAFT_3895at 102.800 kb on - strand, within EX28DRAFT_3895at 103.003 kb on + strand, within EX28DRAFT_3895at 103.004 kb on - strand, within EX28DRAFT_3895at 103.046 kb on + strand, within EX28DRAFT_3895at 103.079 kb on + strand, within EX28DRAFT_3895at 103.079 kb on + strand, within EX28DRAFT_3895at 103.080 kb on - strand, within EX28DRAFT_3895at 103.080 kb on - strand, within EX28DRAFT_3895at 103.082 kb on - strand, within EX28DRAFT_3895at 103.082 kb on - strand, within EX28DRAFT_3895at 103.097 kb on + strand, within EX28DRAFT_3895at 103.120 kb on - strand, within EX28DRAFT_3895at 103.217 kb on + strandat 103.378 kb on + strandat 103.379 kb on - strandat 103.467 kb on + strand, within EX28DRAFT_3896at 103.468 kb on - strand, within EX28DRAFT_3896at 103.468 kb on - strand, within EX28DRAFT_3896at 103.516 kb on - strand, within EX28DRAFT_3896at 103.540 kb on + strand, within EX28DRAFT_3896at 103.541 kb on - strand, within EX28DRAFT_3896at 103.710 kb on - strand, within EX28DRAFT_3896at 103.734 kb on + strand, within EX28DRAFT_3896at 103.734 kb on + strand, within EX28DRAFT_3896at 103.735 kb on - strand, within EX28DRAFT_3896at 103.735 kb on - strand, within EX28DRAFT_3896at 103.764 kb on + strand, within EX28DRAFT_3896at 103.830 kb on + strand, within EX28DRAFT_3896at 103.878 kb on + strand, within EX28DRAFT_3896at 103.909 kb on + strand, within EX28DRAFT_3896at 103.909 kb on + strand, within EX28DRAFT_3896at 103.910 kb on - strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.200 kb on - strand, within EX28DRAFT_3896at 104.206 kb on - strand, within EX28DRAFT_3896at 104.206 kb on - strand, within EX28DRAFT_3896at 104.257 kb on + strand, within EX28DRAFT_3896at 104.369 kb on - strand, within EX28DRAFT_3896at 104.420 kb on - strand, within EX28DRAFT_3896at 104.425 kb on + strand, within EX28DRAFT_3896at 104.425 kb on + strand, within EX28DRAFT_3896at 104.473 kb on - strand, within EX28DRAFT_3896at 104.473 kb on - strand, within EX28DRAFT_3896at 104.487 kb on + strand, within EX28DRAFT_3896at 104.488 kb on - strand, within EX28DRAFT_3896at 104.626 kb on + strand, within EX28DRAFT_3896at 104.626 kb on + strand, within EX28DRAFT_3896at 104.908 kb on + strandat 104.922 kb on - strandat 105.012 kb on - strandat 105.071 kb on - strandat 105.097 kb on + strandat 105.097 kb on + strandat 105.105 kb on + strandat 105.817 kb on + strandat 105.821 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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102,264 + EX28DRAFT_3894 0.85 +0.3
102,264 + EX28DRAFT_3894 0.85 +0.0
102,264 + EX28DRAFT_3894 0.85 -0.1
102,599 + -0.6
102,599 + -0.2
102,601 + +0.1
102,601 + -0.5
102,602 - +0.2
102,602 - +0.4
102,602 - +0.1
102,709 + EX28DRAFT_3895 0.17 -0.6
102,792 - EX28DRAFT_3895 0.31 -0.4
102,800 - EX28DRAFT_3895 0.32 +0.5
103,003 + EX28DRAFT_3895 0.65 -1.0
103,004 - EX28DRAFT_3895 0.65 -0.4
103,046 + EX28DRAFT_3895 0.72 +0.5
103,079 + EX28DRAFT_3895 0.77 +0.7
103,079 + EX28DRAFT_3895 0.77 -0.1
103,080 - EX28DRAFT_3895 0.77 +0.3
103,080 - EX28DRAFT_3895 0.77 +0.6
103,082 - EX28DRAFT_3895 0.78 +0.2
103,082 - EX28DRAFT_3895 0.78 +0.5
103,097 + EX28DRAFT_3895 0.80 -0.2
103,120 - EX28DRAFT_3895 0.84 +0.7
103,217 + +0.1
103,378 + -0.1
103,379 - -0.1
103,467 + EX28DRAFT_3896 0.15 -0.0
103,468 - EX28DRAFT_3896 0.15 -0.3
103,468 - EX28DRAFT_3896 0.15 +0.2
103,516 - EX28DRAFT_3896 0.18 +0.1
103,540 + EX28DRAFT_3896 0.19 +0.3
103,541 - EX28DRAFT_3896 0.19 -0.0
103,710 - EX28DRAFT_3896 0.29 +0.2
103,734 + EX28DRAFT_3896 0.31 -0.1
103,734 + EX28DRAFT_3896 0.31 -0.4
103,735 - EX28DRAFT_3896 0.31 -0.1
103,735 - EX28DRAFT_3896 0.31 -0.1
103,764 + EX28DRAFT_3896 0.32 -0.1
103,830 + EX28DRAFT_3896 0.36 -0.5
103,878 + EX28DRAFT_3896 0.39 +0.4
103,909 + EX28DRAFT_3896 0.41 +0.3
103,909 + EX28DRAFT_3896 0.41 -0.6
103,910 - EX28DRAFT_3896 0.41 +0.2
104,199 + EX28DRAFT_3896 0.58 -0.3
104,199 + EX28DRAFT_3896 0.58 +0.1
104,199 + EX28DRAFT_3896 0.58 +0.6
104,199 + EX28DRAFT_3896 0.58 -0.5
104,200 - EX28DRAFT_3896 0.59 -0.1
104,206 - EX28DRAFT_3896 0.59 +1.3
104,206 - EX28DRAFT_3896 0.59 -0.1
104,257 + EX28DRAFT_3896 0.62 +0.2
104,369 - EX28DRAFT_3896 0.69 +0.3
104,420 - EX28DRAFT_3896 0.72 +0.3
104,425 + EX28DRAFT_3896 0.72 +0.4
104,425 + EX28DRAFT_3896 0.72 -0.2
104,473 - EX28DRAFT_3896 0.75 +0.4
104,473 - EX28DRAFT_3896 0.75 +0.1
104,487 + EX28DRAFT_3896 0.76 +0.4
104,488 - EX28DRAFT_3896 0.76 +0.2
104,626 + EX28DRAFT_3896 0.84 +0.3
104,626 + EX28DRAFT_3896 0.84 +1.2
104,908 + +0.0
104,922 - +0.1
105,012 - +0.3
105,071 - +0.3
105,097 + -1.0
105,097 + -0.6
105,105 + -1.0
105,817 + -0.5
105,821 + -0.1

Or see this region's nucleotide sequence