Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3881

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3880 and EX28DRAFT_3881 are separated by 11 nucleotidesEX28DRAFT_3881 and EX28DRAFT_3882 are separated by 66 nucleotides EX28DRAFT_3880: EX28DRAFT_3880 - Glycosyltransferase, at 90,511 to 91,611 _3880 EX28DRAFT_3881: EX28DRAFT_3881 - Glycosyltransferases involved in cell wall biogenesis, at 91,623 to 92,612 _3881 EX28DRAFT_3882: EX28DRAFT_3882 - 3-deoxy-D-manno-octulosonic-acid transferase, at 92,679 to 93,953 _3882 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1at 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.887 kb on - strand, within EX28DRAFT_3880at 90.921 kb on + strand, within EX28DRAFT_3880at 90.922 kb on - strand, within EX28DRAFT_3880at 90.930 kb on + strand, within EX28DRAFT_3880at 90.931 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.946 kb on + strand, within EX28DRAFT_3880at 91.042 kb on - strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.109 kb on - strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.160 kb on + strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.334 kb on + strand, within EX28DRAFT_3880at 91.335 kb on - strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.366 kb on - strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.509 kb on + strandat 91.510 kb on - strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.516 kb on - strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.584 kb on + strandat 91.584 kb on + strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.610 kb on - strandat 91.623 kb on - strandat 91.645 kb on + strandat 91.665 kb on + strandat 91.698 kb on - strandat 91.817 kb on + strand, within EX28DRAFT_3881at 91.819 kb on + strand, within EX28DRAFT_3881at 91.820 kb on - strand, within EX28DRAFT_3881at 91.884 kb on + strand, within EX28DRAFT_3881at 91.929 kb on + strand, within EX28DRAFT_3881at 91.930 kb on - strand, within EX28DRAFT_3881at 91.993 kb on - strand, within EX28DRAFT_3881at 92.105 kb on + strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.271 kb on + strand, within EX28DRAFT_3881at 92.298 kb on - strand, within EX28DRAFT_3881at 92.340 kb on + strand, within EX28DRAFT_3881at 92.340 kb on + strand, within EX28DRAFT_3881at 92.341 kb on - strand, within EX28DRAFT_3881at 92.395 kb on + strand, within EX28DRAFT_3881at 92.584 kb on - strandat 92.610 kb on + strandat 92.611 kb on - strandat 92.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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90,687 + EX28DRAFT_3880 0.16 -1.6
90,687 + EX28DRAFT_3880 0.16 +0.3
90,687 + EX28DRAFT_3880 0.16 -0.5
90,688 - EX28DRAFT_3880 0.16 +0.1
90,688 - EX28DRAFT_3880 0.16 +1.7
90,688 - EX28DRAFT_3880 0.16 -0.3
90,887 - EX28DRAFT_3880 0.34 -0.1
90,921 + EX28DRAFT_3880 0.37 -0.5
90,922 - EX28DRAFT_3880 0.37 -0.3
90,930 + EX28DRAFT_3880 0.38 -0.1
90,931 - EX28DRAFT_3880 0.38 -1.1
90,943 - EX28DRAFT_3880 0.39 -0.3
90,943 - EX28DRAFT_3880 0.39 -0.6
90,943 - EX28DRAFT_3880 0.39 -0.3
90,946 + EX28DRAFT_3880 0.40 +1.3
91,042 - EX28DRAFT_3880 0.48 -0.5
91,108 + EX28DRAFT_3880 0.54 -0.8
91,108 + EX28DRAFT_3880 0.54 +0.4
91,109 - EX28DRAFT_3880 0.54 -0.6
91,113 + EX28DRAFT_3880 0.55 -0.6
91,113 + EX28DRAFT_3880 0.55 -0.4
91,114 - EX28DRAFT_3880 0.55 -0.1
91,114 - EX28DRAFT_3880 0.55 -0.2
91,114 - EX28DRAFT_3880 0.55 -0.5
91,114 - EX28DRAFT_3880 0.55 -0.7
91,160 + EX28DRAFT_3880 0.59 -0.7
91,161 - EX28DRAFT_3880 0.59 -2.3
91,161 - EX28DRAFT_3880 0.59 -1.5
91,161 - EX28DRAFT_3880 0.59 -0.1
91,334 + EX28DRAFT_3880 0.75 -0.8
91,335 - EX28DRAFT_3880 0.75 -0.4
91,340 + EX28DRAFT_3880 0.75 -0.8
91,340 + EX28DRAFT_3880 0.75 -0.4
91,340 + EX28DRAFT_3880 0.75 -0.5
91,340 + EX28DRAFT_3880 0.75 -0.4
91,341 - EX28DRAFT_3880 0.75 -0.3
91,341 - EX28DRAFT_3880 0.75 -0.0
91,341 - EX28DRAFT_3880 0.75 -0.2
91,366 - EX28DRAFT_3880 0.78 -0.6
91,386 + EX28DRAFT_3880 0.79 -0.4
91,386 + EX28DRAFT_3880 0.79 -0.6
91,411 - EX28DRAFT_3880 0.82 -0.6
91,411 - EX28DRAFT_3880 0.82 -0.6
91,475 + EX28DRAFT_3880 0.88 -0.2
91,475 + EX28DRAFT_3880 0.88 -0.5
91,475 + EX28DRAFT_3880 0.88 -1.3
91,476 - EX28DRAFT_3880 0.88 -0.2
91,476 - EX28DRAFT_3880 0.88 -0.1
91,509 + +0.3
91,510 - -0.2
91,513 + -0.4
91,513 + -0.6
91,513 + -0.9
91,513 + -0.6
91,514 - -1.2
91,514 - +0.1
91,514 - -0.9
91,514 - -0.5
91,516 - -0.3
91,582 + -1.4
91,582 + -0.3
91,582 + +0.1
91,582 + +0.0
91,582 + +1.4
91,583 - +0.4
91,583 - -1.2
91,583 - -0.8
91,584 + -0.5
91,584 + -0.1
91,585 - -0.5
91,585 - -3.0
91,585 - +0.0
91,610 - -0.3
91,623 - +0.2
91,645 + +0.8
91,665 + -1.3
91,698 - -1.0
91,817 + EX28DRAFT_3881 0.20 -0.5
91,819 + EX28DRAFT_3881 0.20 -0.1
91,820 - EX28DRAFT_3881 0.20 -0.2
91,884 + EX28DRAFT_3881 0.26 -1.4
91,929 + EX28DRAFT_3881 0.31 +0.4
91,930 - EX28DRAFT_3881 0.31 +0.2
91,993 - EX28DRAFT_3881 0.37 +0.8
92,105 + EX28DRAFT_3881 0.49 -1.8
92,106 - EX28DRAFT_3881 0.49 +0.5
92,106 - EX28DRAFT_3881 0.49 -0.2
92,106 - EX28DRAFT_3881 0.49 -1.3
92,106 - EX28DRAFT_3881 0.49 -1.2
92,271 + EX28DRAFT_3881 0.65 -0.3
92,298 - EX28DRAFT_3881 0.68 +0.3
92,340 + EX28DRAFT_3881 0.72 -0.3
92,340 + EX28DRAFT_3881 0.72 -1.0
92,341 - EX28DRAFT_3881 0.73 -0.0
92,395 + EX28DRAFT_3881 0.78 -0.1
92,584 - +0.5
92,610 + +0.6
92,611 - -0.2
92,632 + +0.3

Or see this region's nucleotide sequence