Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3831

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3830 and EX28DRAFT_3831 are separated by 308 nucleotidesEX28DRAFT_3831 and EX28DRAFT_3832 are separated by 72 nucleotides EX28DRAFT_3830: EX28DRAFT_3830 - xylose isomerase, at 34,349 to 35,734 _3830 EX28DRAFT_3831: EX28DRAFT_3831 - D-xylose ABC transporter, substrate-binding protein, at 36,043 to 37,035 _3831 EX28DRAFT_3832: EX28DRAFT_3832 - D-xylose ABC transporter, ATP-binding protein, at 37,108 to 38,649 _3832 Position (kb) 36 37 38Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.182 kb on + strand, within EX28DRAFT_3830at 35.183 kb on - strand, within EX28DRAFT_3830at 35.183 kb on - strand, within EX28DRAFT_3830at 35.297 kb on + strand, within EX28DRAFT_3830at 35.329 kb on - strand, within EX28DRAFT_3830at 35.329 kb on - strand, within EX28DRAFT_3830at 35.329 kb on - strand, within EX28DRAFT_3830at 35.379 kb on + strand, within EX28DRAFT_3830at 35.379 kb on + strand, within EX28DRAFT_3830at 35.379 kb on + strand, within EX28DRAFT_3830at 35.380 kb on - strand, within EX28DRAFT_3830at 35.394 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.607 kb on - strandat 35.607 kb on - strandat 35.662 kb on - strandat 35.719 kb on - strandat 35.729 kb on - strandat 35.750 kb on + strandat 35.806 kb on + strandat 35.858 kb on - strandat 35.931 kb on - strandat 36.002 kb on + strandat 36.017 kb on + strandat 36.017 kb on + strandat 36.066 kb on - strandat 36.310 kb on + strand, within EX28DRAFT_3831at 36.311 kb on - strand, within EX28DRAFT_3831at 36.324 kb on - strand, within EX28DRAFT_3831at 36.326 kb on + strand, within EX28DRAFT_3831at 36.327 kb on - strand, within EX28DRAFT_3831at 36.327 kb on - strand, within EX28DRAFT_3831at 36.409 kb on + strand, within EX28DRAFT_3831at 36.446 kb on + strand, within EX28DRAFT_3831at 36.487 kb on + strand, within EX28DRAFT_3831at 36.487 kb on + strand, within EX28DRAFT_3831at 36.512 kb on + strand, within EX28DRAFT_3831at 36.516 kb on + strand, within EX28DRAFT_3831at 36.516 kb on + strand, within EX28DRAFT_3831at 36.586 kb on - strand, within EX28DRAFT_3831at 36.763 kb on - strand, within EX28DRAFT_3831at 36.879 kb on - strand, within EX28DRAFT_3831at 36.879 kb on - strand, within EX28DRAFT_3831at 36.903 kb on + strand, within EX28DRAFT_3831at 36.903 kb on + strand, within EX28DRAFT_3831at 36.903 kb on + strand, within EX28DRAFT_3831at 36.904 kb on - strand, within EX28DRAFT_3831at 37.075 kb on + strandat 37.075 kb on + strandat 37.076 kb on - strandat 37.076 kb on - strandat 37.076 kb on - strandat 37.094 kb on + strandat 37.094 kb on + strandat 37.095 kb on - strandat 37.095 kb on - strandat 37.107 kb on + strandat 37.118 kb on + strandat 37.118 kb on + strandat 37.119 kb on - strandat 37.267 kb on + strand, within EX28DRAFT_3832at 37.267 kb on + strand, within EX28DRAFT_3832at 37.282 kb on + strand, within EX28DRAFT_3832at 37.454 kb on - strand, within EX28DRAFT_3832at 37.566 kb on - strand, within EX28DRAFT_3832at 37.581 kb on + strand, within EX28DRAFT_3832at 37.657 kb on - strand, within EX28DRAFT_3832at 37.692 kb on + strand, within EX28DRAFT_3832at 37.693 kb on - strand, within EX28DRAFT_3832at 37.697 kb on - strand, within EX28DRAFT_3832at 37.697 kb on - strand, within EX28DRAFT_3832at 37.836 kb on - strand, within EX28DRAFT_3832at 38.018 kb on + strand, within EX28DRAFT_3832at 38.018 kb on + strand, within EX28DRAFT_3832at 38.019 kb on - strand, within EX28DRAFT_3832

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
35,118 + EX28DRAFT_3830 0.55 +0.0
35,118 + EX28DRAFT_3830 0.55 +0.8
35,118 + EX28DRAFT_3830 0.55 +0.1
35,118 + EX28DRAFT_3830 0.55 +0.9
35,118 + EX28DRAFT_3830 0.55 +0.7
35,119 - EX28DRAFT_3830 0.56 -1.9
35,119 - EX28DRAFT_3830 0.56 -0.3
35,119 - EX28DRAFT_3830 0.56 +0.8
35,182 + EX28DRAFT_3830 0.60 -0.5
35,183 - EX28DRAFT_3830 0.60 +0.3
35,183 - EX28DRAFT_3830 0.60 +1.1
35,297 + EX28DRAFT_3830 0.68 -0.6
35,329 - EX28DRAFT_3830 0.71 -0.3
35,329 - EX28DRAFT_3830 0.71 +0.5
35,329 - EX28DRAFT_3830 0.71 +0.9
35,379 + EX28DRAFT_3830 0.74 -1.5
35,379 + EX28DRAFT_3830 0.74 +0.1
35,379 + EX28DRAFT_3830 0.74 -0.1
35,380 - EX28DRAFT_3830 0.74 +1.7
35,394 - EX28DRAFT_3830 0.75 +0.2
35,522 - EX28DRAFT_3830 0.85 +0.4
35,522 - EX28DRAFT_3830 0.85 +0.2
35,522 - EX28DRAFT_3830 0.85 +0.6
35,522 - EX28DRAFT_3830 0.85 +0.4
35,607 - +0.1
35,607 - -0.3
35,662 - -0.2
35,719 - +0.3
35,729 - +2.8
35,750 + +0.2
35,806 + -1.2
35,858 - -0.8
35,931 - +0.2
36,002 + +0.1
36,017 + -4.0
36,017 + -0.5
36,066 - -1.2
36,310 + EX28DRAFT_3831 0.27 +0.2
36,311 - EX28DRAFT_3831 0.27 +0.5
36,324 - EX28DRAFT_3831 0.28 -0.6
36,326 + EX28DRAFT_3831 0.28 +0.0
36,327 - EX28DRAFT_3831 0.29 -0.3
36,327 - EX28DRAFT_3831 0.29 +0.8
36,409 + EX28DRAFT_3831 0.37 -0.1
36,446 + EX28DRAFT_3831 0.41 -0.3
36,487 + EX28DRAFT_3831 0.45 +0.2
36,487 + EX28DRAFT_3831 0.45 +0.5
36,512 + EX28DRAFT_3831 0.47 +0.0
36,516 + EX28DRAFT_3831 0.48 +0.4
36,516 + EX28DRAFT_3831 0.48 +0.4
36,586 - EX28DRAFT_3831 0.55 +1.0
36,763 - EX28DRAFT_3831 0.73 +0.6
36,879 - EX28DRAFT_3831 0.84 -0.3
36,879 - EX28DRAFT_3831 0.84 +0.2
36,903 + EX28DRAFT_3831 0.87 +1.0
36,903 + EX28DRAFT_3831 0.87 -0.1
36,903 + EX28DRAFT_3831 0.87 -1.0
36,904 - EX28DRAFT_3831 0.87 -0.0
37,075 + -0.9
37,075 + -0.1
37,076 - +0.9
37,076 - +0.4
37,076 - -1.8
37,094 + -1.1
37,094 + +0.1
37,095 - -0.5
37,095 - +1.2
37,107 + -1.3
37,118 + +0.5
37,118 + -0.9
37,119 - +0.2
37,267 + EX28DRAFT_3832 0.10 -0.3
37,267 + EX28DRAFT_3832 0.10 -0.3
37,282 + EX28DRAFT_3832 0.11 -0.3
37,454 - EX28DRAFT_3832 0.22 -0.1
37,566 - EX28DRAFT_3832 0.30 -0.2
37,581 + EX28DRAFT_3832 0.31 -0.3
37,657 - EX28DRAFT_3832 0.36 +0.5
37,692 + EX28DRAFT_3832 0.38 -1.0
37,693 - EX28DRAFT_3832 0.38 -0.4
37,697 - EX28DRAFT_3832 0.38 +1.9
37,697 - EX28DRAFT_3832 0.38 -0.7
37,836 - EX28DRAFT_3832 0.47 -0.3
38,018 + EX28DRAFT_3832 0.59 -1.8
38,018 + EX28DRAFT_3832 0.59 -0.2
38,019 - EX28DRAFT_3832 0.59 -0.1

Or see this region's nucleotide sequence